Wall clock time and date at job start Sun Mar 29 2020 22:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52997 * 109.47100 * 2 1 4 4 C 1.53005 * 109.46701 * 119.99493 * 2 1 3 5 5 N 1.46900 * 109.46681 * 179.64026 * 4 2 1 6 6 C 1.46902 * 110.99782 * 158.43307 * 5 4 2 7 7 C 1.50703 * 109.46711 * 288.07855 * 6 5 4 8 8 H 1.08001 * 119.99960 * 4.90190 * 7 6 5 9 9 C 1.37877 * 120.00021 * 184.89994 * 7 6 5 10 10 N 1.31521 * 119.99726 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00102 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47206 * 359.97438 * 11 9 7 13 13 H 1.48501 * 109.47182 * 119.99956 * 11 9 7 14 14 H 1.48504 * 109.47016 * 239.99762 * 11 9 7 15 15 C 1.46900 * 111.00000 * 282.38335 * 5 4 2 16 16 C 1.52995 * 109.47407 * 92.37499 * 15 5 4 17 17 H 1.08998 * 111.02212 * 301.11360 * 16 15 5 18 18 C 1.55304 * 111.12893 * 176.89437 * 16 15 5 19 19 C 1.54381 * 102.25514 * 207.94829 * 18 16 15 20 20 O 1.43240 * 107.58709 * 21.35422 * 19 18 16 21 21 C 1.43652 * 109.97384 * 1.71249 * 20 19 18 22 22 H 1.08997 * 109.47335 * 300.00734 * 1 2 3 23 23 H 1.09001 * 109.46833 * 60.00005 * 1 2 3 24 24 H 1.09001 * 109.47225 * 180.02562 * 1 2 3 25 25 H 1.08993 * 109.46933 * 239.99528 * 2 1 3 26 26 H 1.09006 * 109.47187 * 301.07577 * 3 2 1 27 27 H 1.09002 * 109.47352 * 61.07126 * 3 2 1 28 28 H 1.08996 * 109.47498 * 181.07332 * 3 2 1 29 29 H 1.09002 * 109.46585 * 59.64276 * 4 2 1 30 30 H 1.08994 * 109.47112 * 299.63949 * 4 2 1 31 31 H 1.08997 * 109.47281 * 48.07862 * 6 5 4 32 32 H 1.08996 * 109.47236 * 168.08265 * 6 5 4 33 33 H 0.96996 * 119.99627 * 180.02562 * 10 9 7 34 34 H 1.09009 * 109.46971 * 332.37353 * 15 5 4 35 35 H 1.09005 * 109.47247 * 212.37629 * 15 5 4 36 36 H 1.08998 * 110.84942 * 89.75427 * 18 16 15 37 37 H 1.09001 * 111.01900 * 326.21841 * 18 16 15 38 38 H 1.08992 * 109.82978 * 261.84278 * 19 18 16 39 39 H 1.09002 * 109.90668 * 140.90856 * 19 18 16 40 40 H 1.08998 * 110.30823 * 94.48357 * 21 20 19 41 41 H 1.08994 * 110.30792 * 216.65514 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 7 3.5090 -0.7287 1.2450 6 6 4.0384 -0.9296 2.6005 7 6 3.8155 0.3175 3.4167 8 1 3.2597 1.1441 2.9991 9 6 4.3211 0.4034 4.6966 10 7 4.9974 -0.6034 5.2053 11 14 4.0442 1.9489 5.7085 12 1 3.2588 2.9269 4.9136 13 1 3.2990 1.6037 6.9457 14 1 5.3553 2.5451 6.0704 15 6 4.0275 -1.7464 0.3212 16 6 4.2652 -1.1150 -1.0519 17 1 3.3438 -0.6930 -1.4531 18 6 4.8877 -2.1398 -2.0391 19 6 5.6824 -1.2288 -2.9992 20 8 5.9254 0.0086 -2.3199 21 6 5.3871 -0.0481 -0.9893 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.8934 -0.5139 -0.8899 26 1 1.6611 1.9619 -0.8802 27 1 1.6925 1.9508 0.8994 28 1 3.1299 1.4426 -0.0192 29 1 1.6713 -1.7470 1.2526 30 1 1.6819 -0.2036 2.1392 31 1 3.5247 -1.7681 3.0707 32 1 5.1060 -1.1420 2.5459 33 1 5.3527 -0.5431 6.1058 34 1 3.3031 -2.5558 0.2285 35 1 4.9671 -2.1422 0.7068 36 1 4.1099 -2.6837 -2.5751 37 1 5.5527 -2.8293 -1.5190 38 1 5.1003 -1.0466 -3.9025 39 1 6.6301 -1.7004 -3.2590 40 1 6.1587 -0.3516 -0.2817 41 1 4.9734 0.9199 -0.7070 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043419737.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:59 Heat of formation + Delta-G solvation = -59.923285 kcal Electronic energy + Delta-G solvation = -18612.566586 eV Core-core repulsion = 15912.861292 eV Total energy + Delta-G solvation = -2699.705294 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.31019 -37.34183 -34.10020 -32.89603 -31.72860 -29.26648 -27.12757 -26.68806 -25.60344 -23.83769 -22.06442 -20.95603 -19.98178 -19.36361 -16.57944 -16.34370 -15.45822 -15.25112 -14.64897 -14.41004 -14.15535 -13.60344 -13.36868 -13.18907 -12.82008 -12.45983 -12.28449 -11.80455 -11.65003 -11.55041 -11.27443 -11.18461 -10.94651 -10.88200 -10.77440 -10.63141 -10.39437 -10.24650 -10.15269 -9.69080 -9.67742 -9.19551 -9.16828 -8.43628 -7.25119 -6.02360 -4.02994 3.31054 3.38915 3.43473 4.17278 4.41790 4.64536 4.88808 5.04510 5.21744 5.30823 5.34759 5.37280 5.45609 5.59538 5.69892 5.78269 5.84232 5.90665 5.99462 6.03591 6.09702 6.13591 6.15132 6.21825 6.29384 6.41440 6.44944 6.51372 6.58590 6.64358 6.92902 7.01481 7.27417 7.28862 7.32448 7.82929 8.10538 8.22485 8.54704 9.05359 9.61267 11.08429 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.020331 B = 0.007374 C = 0.006297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.860610 B = 3796.014674 C = 4445.762914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.096 4.096 3 C -0.134 4.134 4 C 0.067 3.933 5 N -0.532 5.532 6 C 0.194 3.806 7 C -0.501 4.501 8 H 0.065 0.935 9 C 0.054 3.946 10 N -0.900 5.900 11 Si 0.895 3.105 12 H -0.272 1.272 13 H -0.286 1.286 14 H -0.284 1.284 15 C 0.064 3.936 16 C -0.116 4.116 17 H 0.091 0.909 18 C -0.156 4.156 19 C 0.054 3.946 20 O -0.394 6.394 21 C 0.068 3.932 22 H 0.054 0.946 23 H 0.048 0.952 24 H 0.047 0.953 25 H 0.065 0.935 26 H 0.034 0.966 27 H 0.050 0.950 28 H 0.071 0.929 29 H 0.018 0.982 30 H 0.081 0.919 31 H -0.014 1.014 32 H 0.032 0.968 33 H 0.260 0.740 34 H 0.032 0.968 35 H 0.064 0.936 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.992 -2.078 -12.988 13.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.114 4.114 3 C -0.191 4.191 4 C -0.061 4.061 5 N -0.255 5.255 6 C 0.069 3.931 7 C -0.540 4.540 8 H 0.083 0.917 9 C -0.147 4.147 10 N -0.540 5.540 11 Si 0.723 3.277 12 H -0.197 1.197 13 H -0.212 1.212 14 H -0.211 1.211 15 C -0.065 4.065 16 C -0.135 4.135 17 H 0.109 0.891 18 C -0.194 4.194 19 C -0.023 4.023 20 O -0.314 6.314 21 C -0.008 4.008 22 H 0.073 0.927 23 H 0.067 0.933 24 H 0.066 0.934 25 H 0.083 0.917 26 H 0.053 0.947 27 H 0.069 0.931 28 H 0.090 0.910 29 H 0.036 0.964 30 H 0.100 0.900 31 H 0.004 0.996 32 H 0.050 0.950 33 H 0.070 0.930 34 H 0.051 0.949 35 H 0.082 0.918 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.623 -1.497 -13.048 13.624 hybrid contribution -0.460 -0.332 1.092 1.231 sum -4.082 -1.829 -11.955 12.765 Atomic orbital electron populations 1.21828 0.96310 1.00911 1.01308 1.21282 0.94061 0.97484 0.98607 1.21696 1.02661 0.94850 0.99905 1.22151 0.88661 0.97304 0.98012 1.61976 1.06438 1.45963 1.11124 1.19791 0.95003 0.96141 0.82175 1.21203 1.33847 1.01238 0.97699 0.91724 1.24983 0.95365 0.96442 0.97871 1.69967 1.36907 1.30921 1.16196 0.86486 0.77899 0.83309 0.80001 1.19655 1.21217 1.21066 1.22054 0.99693 0.92795 0.91967 1.23081 0.99372 0.95368 0.95699 0.89083 1.23180 0.99899 0.98628 0.97667 1.23006 0.98743 0.85126 0.95409 1.88366 1.80510 1.35018 1.27531 1.23365 0.94325 1.00396 0.82702 0.92733 0.93285 0.93423 0.91726 0.94688 0.93089 0.91036 0.96410 0.90036 0.99597 0.95028 0.93050 0.94938 0.91754 0.90632 0.90699 0.92009 0.92153 0.92137 0.88952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.19 37.16 0.34 -1.57 16 2 C -0.10 -1.45 2.57 -90.61 -0.23 -1.69 16 3 C -0.13 -2.12 9.02 37.16 0.34 -1.79 16 4 C 0.07 1.23 4.22 -3.82 -0.02 1.22 16 5 N -0.53 -10.63 3.34 -236.07 -0.79 -11.42 16 6 C 0.19 4.85 4.65 -4.97 -0.02 4.83 16 7 C -0.50 -13.66 8.40 -34.44 -0.29 -13.94 16 8 H 0.06 1.75 7.56 -52.49 -0.40 1.35 16 9 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16 10 N -0.90 -26.47 13.29 55.43 0.74 -25.73 16 11 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 12 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 13 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 14 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 15 C 0.06 1.09 4.52 -3.83 -0.02 1.07 16 16 C -0.12 -1.71 3.03 -88.37 -0.27 -1.98 16 17 H 0.09 1.33 5.10 -51.93 -0.26 1.07 16 18 C -0.16 -1.89 6.50 -24.79 -0.16 -2.05 16 19 C 0.05 0.68 7.79 37.88 0.30 0.97 16 20 O -0.39 -6.37 11.36 -35.23 -0.40 -6.77 16 21 C 0.07 1.11 7.07 38.19 0.27 1.38 16 22 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 25 H 0.06 0.95 5.18 -51.93 -0.27 0.68 16 26 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.07 1.24 6.27 -51.93 -0.33 0.92 16 29 H 0.02 0.32 7.56 -51.93 -0.39 -0.07 16 30 H 0.08 1.69 6.95 -51.93 -0.36 1.33 16 31 H -0.01 -0.37 8.05 -51.93 -0.42 -0.79 16 32 H 0.03 0.85 7.61 -51.93 -0.40 0.46 16 33 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 34 H 0.03 0.53 7.40 -51.92 -0.38 0.14 16 35 H 0.06 1.15 7.36 -51.93 -0.38 0.77 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.07 0.89 8.04 -51.93 -0.42 0.48 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.06 1.06 8.01 -51.93 -0.42 0.64 16 41 H 0.09 1.59 6.77 -51.93 -0.35 1.24 16 LS Contribution 316.60 15.07 4.77 4.77 Total: -1.00 -28.68 316.60 -7.86 -36.53 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -7.29 Total: -1.76 kcal Atomic # 6 Polarization: -12.27 SS G_CDS: 0.14 Total: -12.13 kcal Atomic # 7 Polarization: -37.10 SS G_CDS: -0.05 Total: -37.15 kcal Atomic # 8 Polarization: -6.37 SS G_CDS: -0.40 Total: -6.77 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -28.68 -7.86 -36.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043419737.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.389 kcal (2) G-P(sol) polarization free energy of solvation -28.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds