Wall clock time and date at job start Sun Mar 29 2020 22:45:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52997 * 109.47100 * 2 1 4 4 C 1.53005 * 109.46701 * 119.99493 * 2 1 3 5 5 N 1.46900 * 109.46681 * 179.64026 * 4 2 1 6 6 C 1.46902 * 110.99782 * 158.43307 * 5 4 2 7 7 C 1.50703 * 109.46711 * 288.07855 * 6 5 4 8 8 H 1.08001 * 119.99960 * 4.90190 * 7 6 5 9 9 C 1.37877 * 120.00021 * 184.89994 * 7 6 5 10 10 N 1.31521 * 119.99726 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00102 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47206 * 359.97438 * 11 9 7 13 13 H 1.48501 * 109.47182 * 119.99956 * 11 9 7 14 14 H 1.48504 * 109.47016 * 239.99762 * 11 9 7 15 15 C 1.46900 * 111.00000 * 282.38335 * 5 4 2 16 16 C 1.52995 * 109.47407 * 92.37499 * 15 5 4 17 17 H 1.08998 * 111.02212 * 301.11360 * 16 15 5 18 18 C 1.55304 * 111.12893 * 176.89437 * 16 15 5 19 19 C 1.54381 * 102.25514 * 207.94829 * 18 16 15 20 20 O 1.43240 * 107.58709 * 21.35422 * 19 18 16 21 21 C 1.43652 * 109.97384 * 1.71249 * 20 19 18 22 22 H 1.08997 * 109.47335 * 300.00734 * 1 2 3 23 23 H 1.09001 * 109.46833 * 60.00005 * 1 2 3 24 24 H 1.09001 * 109.47225 * 180.02562 * 1 2 3 25 25 H 1.08993 * 109.46933 * 239.99528 * 2 1 3 26 26 H 1.09006 * 109.47187 * 301.07577 * 3 2 1 27 27 H 1.09002 * 109.47352 * 61.07126 * 3 2 1 28 28 H 1.08996 * 109.47498 * 181.07332 * 3 2 1 29 29 H 1.09002 * 109.46585 * 59.64276 * 4 2 1 30 30 H 1.08994 * 109.47112 * 299.63949 * 4 2 1 31 31 H 1.08997 * 109.47281 * 48.07862 * 6 5 4 32 32 H 1.08996 * 109.47236 * 168.08265 * 6 5 4 33 33 H 0.96996 * 119.99627 * 180.02562 * 10 9 7 34 34 H 1.09009 * 109.46971 * 332.37353 * 15 5 4 35 35 H 1.09005 * 109.47247 * 212.37629 * 15 5 4 36 36 H 1.08998 * 110.84942 * 89.75427 * 18 16 15 37 37 H 1.09001 * 111.01900 * 326.21841 * 18 16 15 38 38 H 1.08992 * 109.82978 * 261.84278 * 19 18 16 39 39 H 1.09002 * 109.90668 * 140.90856 * 19 18 16 40 40 H 1.08998 * 110.30823 * 94.48357 * 21 20 19 41 41 H 1.08994 * 110.30792 * 216.65514 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 7 3.5090 -0.7287 1.2450 6 6 4.0384 -0.9296 2.6005 7 6 3.8155 0.3175 3.4167 8 1 3.2597 1.1441 2.9991 9 6 4.3211 0.4034 4.6966 10 7 4.9974 -0.6034 5.2053 11 14 4.0442 1.9489 5.7085 12 1 3.2588 2.9269 4.9136 13 1 3.2990 1.6037 6.9457 14 1 5.3553 2.5451 6.0704 15 6 4.0275 -1.7464 0.3212 16 6 4.2652 -1.1150 -1.0519 17 1 3.3438 -0.6930 -1.4531 18 6 4.8877 -2.1398 -2.0391 19 6 5.6824 -1.2288 -2.9992 20 8 5.9254 0.0086 -2.3199 21 6 5.3871 -0.0481 -0.9893 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.8934 -0.5139 -0.8899 26 1 1.6611 1.9619 -0.8802 27 1 1.6925 1.9508 0.8994 28 1 3.1299 1.4426 -0.0192 29 1 1.6713 -1.7470 1.2526 30 1 1.6819 -0.2036 2.1392 31 1 3.5247 -1.7681 3.0707 32 1 5.1060 -1.1420 2.5459 33 1 5.3527 -0.5431 6.1058 34 1 3.3031 -2.5558 0.2285 35 1 4.9671 -2.1422 0.7068 36 1 4.1099 -2.6837 -2.5751 37 1 5.5527 -2.8293 -1.5190 38 1 5.1003 -1.0466 -3.9025 39 1 6.6301 -1.7004 -3.2590 40 1 6.1587 -0.3516 -0.2817 41 1 4.9734 0.9199 -0.7070 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043419737.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:58 Heat of formation + Delta-G solvation = -77.138218 kcal Electronic energy + Delta-G solvation = -18613.313082 eV Core-core repulsion = 15912.861292 eV Total energy + Delta-G solvation = -2700.451790 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.55673 -38.79488 -35.58740 -34.68532 -33.24824 -30.47251 -29.01801 -27.85264 -27.02022 -25.58766 -23.33108 -22.47298 -21.31524 -20.70448 -18.43328 -17.79376 -16.80963 -16.68097 -16.38226 -15.76513 -15.55012 -15.13800 -14.73755 -14.37371 -14.28538 -14.02892 -13.72572 -13.39863 -13.09175 -12.94586 -12.73538 -12.67057 -12.47007 -12.36366 -12.16731 -11.99951 -11.91859 -11.73014 -11.52245 -11.35719 -11.13998 -10.92562 -10.59940 -10.38935 -8.93745 -8.18391 -6.26811 1.39446 1.40927 1.53629 2.40526 2.99415 3.13414 3.27165 3.69806 3.87971 4.04391 4.06826 4.24443 4.29913 4.36266 4.48234 4.53824 4.63527 4.73157 4.78996 4.85188 4.89813 4.93546 4.96819 4.98381 5.02765 5.12903 5.14238 5.22771 5.24975 5.28862 5.38345 5.39360 5.64701 5.69656 5.73622 6.09869 6.13767 6.43536 6.69294 6.90178 7.42419 8.92428 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.020331 B = 0.007374 C = 0.006297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.860610 B = 3796.014674 C = 4445.762914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.087 4.087 3 C -0.131 4.131 4 C 0.068 3.932 5 N -0.532 5.532 6 C 0.210 3.790 7 C -0.511 4.511 8 H 0.063 0.937 9 C 0.001 3.999 10 N -0.936 5.936 11 Si 0.963 3.037 12 H -0.264 1.264 13 H -0.280 1.280 14 H -0.281 1.281 15 C 0.065 3.935 16 C -0.107 4.107 17 H 0.100 0.900 18 C -0.147 4.147 19 C 0.046 3.954 20 O -0.413 6.413 21 C 0.071 3.929 22 H 0.046 0.954 23 H 0.070 0.930 24 H 0.057 0.943 25 H 0.079 0.921 26 H 0.059 0.941 27 H 0.034 0.966 28 H 0.051 0.949 29 H 0.023 0.977 30 H 0.052 0.948 31 H -0.042 1.042 32 H 0.003 0.997 33 H 0.262 0.738 34 H 0.047 0.953 35 H 0.049 0.951 36 H 0.103 0.897 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.074 0.926 40 H 0.039 0.961 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.239 -1.818 -14.876 15.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.105 4.105 3 C -0.188 4.188 4 C -0.060 4.060 5 N -0.256 5.256 6 C 0.084 3.916 7 C -0.549 4.549 8 H 0.081 0.919 9 C -0.197 4.197 10 N -0.577 5.577 11 Si 0.788 3.212 12 H -0.188 1.188 13 H -0.205 1.205 14 H -0.207 1.207 15 C -0.063 4.063 16 C -0.125 4.125 17 H 0.118 0.882 18 C -0.185 4.185 19 C -0.030 4.030 20 O -0.333 6.333 21 C -0.005 4.005 22 H 0.065 0.935 23 H 0.089 0.911 24 H 0.076 0.924 25 H 0.097 0.903 26 H 0.078 0.922 27 H 0.053 0.947 28 H 0.070 0.930 29 H 0.041 0.959 30 H 0.070 0.930 31 H -0.025 1.025 32 H 0.021 0.979 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.122 0.878 37 H 0.094 0.906 38 H 0.101 0.899 39 H 0.092 0.908 40 H 0.057 0.943 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.881 -1.240 -14.963 15.788 hybrid contribution -0.051 -0.459 1.628 1.692 sum -4.932 -1.699 -13.335 14.319 Atomic orbital electron populations 1.21791 0.94222 1.01863 1.02036 1.21221 0.95690 0.96560 0.97057 1.21654 1.01381 0.95499 1.00285 1.22182 0.87357 0.97704 0.98754 1.61942 1.07675 1.47270 1.08689 1.19411 0.93104 0.94342 0.84726 1.21488 1.33456 1.01747 0.98230 0.91925 1.25850 0.95090 0.99588 0.99143 1.70088 1.37970 1.32990 1.16695 0.85430 0.77930 0.79489 0.78370 1.18795 1.20549 1.20655 1.22094 0.99121 0.92680 0.92442 1.22952 0.99259 0.95633 0.94703 0.88214 1.23171 1.00446 0.97960 0.96881 1.23274 1.00014 0.83938 0.95748 1.88345 1.80738 1.37081 1.27133 1.23192 0.94269 1.00229 0.82845 0.93485 0.91097 0.92409 0.90277 0.92159 0.94706 0.93036 0.95921 0.92961 1.02456 0.97865 0.92875 0.93487 0.93274 0.87801 0.90649 0.89863 0.90795 0.94287 0.90343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.33 9.19 71.99 0.66 -2.66 16 2 C -0.09 -2.48 2.57 -10.79 -0.03 -2.50 16 3 C -0.13 -3.99 9.02 71.98 0.65 -3.34 16 4 C 0.07 2.50 4.22 86.30 0.36 2.87 16 5 N -0.53 -21.76 3.34 -900.78 -3.01 -24.77 16 6 C 0.21 11.02 4.65 85.56 0.40 11.42 16 7 C -0.51 -28.69 8.40 25.60 0.22 -28.48 16 8 H 0.06 3.47 7.56 -2.91 -0.02 3.45 16 9 C 0.00 0.04 5.46 84.65 0.46 0.51 16 10 N -0.94 -56.57 13.29 21.45 0.28 -56.29 16 11 Si 0.96 44.73 29.54 68.60 2.03 46.76 16 12 H -0.26 -11.80 7.11 99.48 0.71 -11.10 16 13 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 14 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 15 C 0.07 2.20 4.52 86.30 0.39 2.59 16 16 C -0.11 -2.98 3.03 -9.34 -0.03 -3.01 16 17 H 0.10 2.65 5.10 -2.39 -0.01 2.63 16 18 C -0.15 -3.15 6.50 31.85 0.21 -2.95 16 19 C 0.05 1.04 7.79 72.45 0.56 1.60 16 20 O -0.41 -12.84 11.36 -148.98 -1.69 -14.53 16 21 C 0.07 2.32 7.07 72.65 0.51 2.83 16 22 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 23 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 24 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.08 2.06 5.18 -2.39 -0.01 2.05 16 26 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 27 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.05 1.77 6.27 -2.39 -0.01 1.76 16 29 H 0.02 0.80 7.56 -2.39 -0.02 0.78 16 30 H 0.05 2.21 6.95 -2.39 -0.02 2.20 16 31 H -0.04 -2.40 8.05 -2.39 -0.02 -2.42 16 32 H 0.00 0.19 7.61 -2.39 -0.02 0.17 16 33 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 34 H 0.05 1.46 7.40 -2.38 -0.02 1.44 16 35 H 0.05 1.81 7.36 -2.38 -0.02 1.79 16 36 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.07 1.63 8.04 -2.39 -0.02 1.61 16 38 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.04 1.42 8.01 -2.39 -0.02 1.40 16 41 H 0.08 2.76 6.77 -2.39 -0.02 2.74 16 Total: -1.00 -63.26 316.60 2.95 -60.31 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: 0.97 Total: 9.63 kcal Atomic # 6 Polarization: -25.48 SS G_CDS: 4.37 Total: -21.11 kcal Atomic # 7 Polarization: -78.33 SS G_CDS: -2.72 Total: -81.05 kcal Atomic # 8 Polarization: -12.84 SS G_CDS: -1.69 Total: -14.53 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -63.26 2.95 -60.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043419737.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.827 kcal (2) G-P(sol) polarization free energy of solvation -63.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds