Wall clock time and date at job start Sun Mar 29 2020 22:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.46864 * 2 1 4 4 C 1.53000 * 109.46784 * 119.99919 * 2 1 3 5 5 N 1.46905 * 109.46739 * 176.19989 * 4 2 1 6 6 C 1.46907 * 110.99777 * 315.84369 * 5 4 2 7 7 C 1.50700 * 109.47212 * 291.33885 * 6 5 4 8 8 H 1.08001 * 120.00010 * 4.92154 * 7 6 5 9 9 C 1.37870 * 120.00102 * 184.92036 * 7 6 5 10 10 N 1.31510 * 120.00047 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 120.00009 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47035 * 60.00206 * 11 9 7 13 13 H 1.48503 * 109.47315 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.47384 * 299.99949 * 11 9 7 15 15 C 1.46897 * 111.00588 * 79.79985 * 5 4 2 16 16 C 1.52999 * 109.47003 * 85.80265 * 15 5 4 17 17 H 1.09005 * 110.98683 * 59.00557 * 16 15 5 18 18 C 1.55449 * 111.14323 * 183.17668 * 16 15 5 19 19 C 1.54388 * 102.18504 * 151.99668 * 18 16 15 20 20 O 1.43244 * 107.66184 * 338.73920 * 19 18 16 21 21 C 1.43637 * 109.97160 * 358.24424 * 20 19 18 22 22 H 1.09001 * 109.47274 * 300.00183 * 1 2 3 23 23 H 1.08999 * 109.47481 * 60.00295 * 1 2 3 24 24 H 1.08997 * 109.47373 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47274 * 239.99817 * 2 1 3 26 26 H 1.09001 * 109.47153 * 74.21040 * 3 2 1 27 27 H 1.09007 * 109.47049 * 194.20750 * 3 2 1 28 28 H 1.08998 * 109.47062 * 314.20367 * 3 2 1 29 29 H 1.08996 * 109.47259 * 56.20040 * 4 2 1 30 30 H 1.08998 * 109.47197 * 296.19262 * 4 2 1 31 31 H 1.08991 * 109.46841 * 51.33811 * 6 5 4 32 32 H 1.09001 * 109.47010 * 171.34172 * 6 5 4 33 33 H 0.97004 * 120.00046 * 179.97438 * 10 9 7 34 34 H 1.09005 * 109.46880 * 325.80766 * 15 5 4 35 35 H 1.09000 * 109.47253 * 205.80799 * 15 5 4 36 36 H 1.09003 * 110.83873 * 33.84943 * 18 16 15 37 37 H 1.09004 * 110.92420 * 270.18134 * 18 16 15 38 38 H 1.08997 * 109.83088 * 219.18047 * 19 18 16 39 39 H 1.08995 * 109.83009 * 98.29684 * 19 18 16 40 40 H 1.08997 * 110.31251 * 143.34078 * 21 20 19 41 41 H 1.08997 * 110.31173 * 265.51054 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5061 -0.8012 1.2042 6 6 3.9711 -1.1930 -0.1331 7 6 3.5815 -2.6239 -0.4012 8 1 2.9743 -3.1611 0.3124 9 6 4.0001 -3.2473 -1.5575 10 7 4.7398 -2.5934 -2.4262 11 14 3.5178 -5.0212 -1.8894 12 1 2.0377 -5.1308 -1.9385 13 1 4.0891 -5.4544 -3.1899 14 1 4.0427 -5.8883 -0.8042 15 6 4.1158 0.4680 1.6227 16 6 4.2483 0.4921 3.1467 17 1 4.8597 -0.3388 3.4986 18 6 4.8169 1.8527 3.6387 19 6 4.2128 1.9654 5.0550 20 8 3.0644 1.1108 5.1069 21 6 2.8569 0.4896 3.8285 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8973 1.8783 0.9889 27 1 3.1003 1.4530 -0.2522 28 1 1.4855 2.0238 -0.7367 29 1 1.6220 -1.7273 1.2840 30 1 1.7333 -0.1695 2.1379 31 1 3.5133 -0.5457 -0.8809 32 1 5.0556 -1.0962 -0.1834 33 1 5.0347 -3.0321 -3.2396 34 1 3.4864 1.2973 1.2996 35 1 5.1030 0.5634 1.1705 36 1 4.4724 2.6692 3.0039 37 1 5.9057 1.8267 3.6823 38 1 3.9158 2.9960 5.2494 39 1 4.9454 1.6457 5.7959 40 1 2.5008 -0.5324 3.9577 41 1 2.1454 1.0672 3.2383 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043419739.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:46:00 Heat of formation + Delta-G solvation = -41.211957 kcal Electronic energy + Delta-G solvation = -18736.990988 eV Core-core repulsion = 16038.097078 eV Total energy + Delta-G solvation = -2698.893910 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.58173 -37.85415 -33.59582 -32.92981 -31.55074 -29.38610 -27.35390 -26.84655 -26.07857 -23.37906 -22.32669 -21.17105 -20.02118 -19.01942 -16.56707 -16.22030 -15.70291 -15.15119 -14.93795 -14.62658 -14.11511 -13.71955 -13.49385 -13.37632 -12.85320 -12.33162 -12.07048 -11.86443 -11.54130 -11.49711 -11.29017 -11.23085 -10.94617 -10.90006 -10.70142 -10.49523 -10.42896 -10.37037 -9.98552 -9.81074 -9.62219 -9.30549 -9.14468 -8.40645 -7.05409 -6.00983 -4.01430 3.34059 3.38218 3.41356 4.05276 4.42980 4.65568 4.87543 5.06210 5.16447 5.31692 5.36361 5.43988 5.49788 5.50407 5.63288 5.74203 5.79530 5.86144 5.91333 5.98231 6.03230 6.12345 6.14772 6.20469 6.22991 6.32356 6.35716 6.49829 6.60489 6.65795 6.82968 6.98334 7.15467 7.33274 7.44180 7.83824 8.13270 8.25355 8.58695 9.05905 9.62520 11.09544 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.025582 B = 0.006707 C = 0.006095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.274621 B = 4173.916278 C = 4593.126965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.140 4.140 3 C -0.147 4.147 4 C 0.063 3.937 5 N -0.533 5.533 6 C 0.186 3.814 7 C -0.501 4.501 8 H 0.060 0.940 9 C 0.055 3.945 10 N -0.900 5.900 11 Si 0.895 3.105 12 H -0.278 1.278 13 H -0.289 1.289 14 H -0.277 1.277 15 C 0.036 3.964 16 C -0.110 4.110 17 H 0.089 0.911 18 C -0.154 4.154 19 C 0.053 3.947 20 O -0.393 6.393 21 C 0.058 3.942 22 H 0.044 0.956 23 H 0.045 0.955 24 H 0.053 0.947 25 H 0.100 0.900 26 H 0.047 0.953 27 H 0.061 0.939 28 H 0.044 0.956 29 H 0.071 0.929 30 H 0.059 0.941 31 H 0.004 0.996 32 H 0.027 0.973 33 H 0.261 0.739 34 H 0.060 0.940 35 H 0.065 0.935 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.061 0.939 39 H 0.064 0.936 40 H 0.089 0.911 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.263 9.203 8.658 13.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.160 4.160 3 C -0.204 4.204 4 C -0.065 4.065 5 N -0.256 5.256 6 C 0.061 3.939 7 C -0.540 4.540 8 H 0.078 0.922 9 C -0.146 4.146 10 N -0.540 5.540 11 Si 0.723 3.277 12 H -0.203 1.203 13 H -0.215 1.215 14 H -0.203 1.203 15 C -0.092 4.092 16 C -0.130 4.130 17 H 0.107 0.893 18 C -0.192 4.192 19 C -0.024 4.024 20 O -0.313 6.313 21 C -0.018 4.018 22 H 0.063 0.937 23 H 0.065 0.935 24 H 0.072 0.928 25 H 0.118 0.882 26 H 0.066 0.934 27 H 0.079 0.921 28 H 0.063 0.937 29 H 0.089 0.911 30 H 0.077 0.923 31 H 0.022 0.978 32 H 0.045 0.955 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.098 0.902 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.108 0.892 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.131 8.771 8.988 12.943 hybrid contribution -0.213 -0.348 -1.122 1.193 sum -3.344 8.423 7.866 12.001 Atomic orbital electron populations 1.21742 0.96170 1.01309 1.00407 1.21865 0.95090 0.95989 1.03049 1.22117 1.01234 0.96892 1.00131 1.22302 0.89053 0.99970 0.95177 1.62272 1.05282 1.26805 1.31208 1.19927 0.95548 0.95810 0.82589 1.21105 1.31870 0.97067 1.03969 0.92151 1.24954 0.95334 0.98032 0.96238 1.69939 1.36461 1.37000 1.10625 0.86612 0.78689 0.85108 0.77296 1.20349 1.21459 1.20257 1.22551 1.00235 0.93818 0.92600 1.22901 0.96111 0.96679 0.97268 0.89302 1.23194 1.01450 0.98464 0.96091 1.23041 0.88099 0.94228 0.97027 1.88371 1.47286 1.62228 1.33405 1.23662 0.97010 0.97935 0.83181 0.93703 0.93549 0.92774 0.88234 0.93389 0.92067 0.93661 0.91069 0.92289 0.97829 0.95484 0.92974 0.92222 0.91684 0.90808 0.90211 0.92104 0.91756 0.89239 0.92364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 9.14 37.16 0.34 -1.73 16 2 C -0.14 -2.47 2.39 -90.62 -0.22 -2.68 16 3 C -0.15 -2.30 7.38 37.16 0.27 -2.02 16 4 C 0.06 1.15 4.39 -3.82 -0.02 1.14 16 5 N -0.53 -10.81 4.54 -236.07 -1.07 -11.88 16 6 C 0.19 4.60 4.01 -4.97 -0.02 4.58 16 7 C -0.50 -13.69 8.62 -34.44 -0.30 -13.98 16 8 H 0.06 1.65 7.19 -52.49 -0.38 1.27 16 9 C 0.06 1.54 5.46 -17.82 -0.10 1.45 16 10 N -0.90 -26.32 13.29 55.43 0.74 -25.58 16 11 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 13 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 14 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 15 C 0.04 0.62 3.91 -3.83 -0.01 0.60 16 16 C -0.11 -1.63 3.35 -88.29 -0.30 -1.93 16 17 H 0.09 1.43 8.14 -51.93 -0.42 1.00 16 18 C -0.15 -1.84 6.52 -24.70 -0.16 -2.00 16 19 C 0.05 0.63 7.79 37.88 0.30 0.93 16 20 O -0.39 -5.93 11.36 -35.23 -0.40 -6.33 16 21 C 0.06 0.85 5.44 38.19 0.21 1.06 16 22 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 23 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 25 H 0.10 2.15 5.77 -51.93 -0.30 1.85 16 26 H 0.05 0.68 7.15 -51.93 -0.37 0.31 16 27 H 0.06 1.04 5.59 -51.93 -0.29 0.74 16 28 H 0.04 0.65 8.06 -51.93 -0.42 0.23 16 29 H 0.07 1.41 7.45 -51.93 -0.39 1.02 16 30 H 0.06 0.95 4.09 -51.93 -0.21 0.73 16 31 H 0.00 0.11 4.84 -51.93 -0.25 -0.15 16 32 H 0.03 0.74 7.71 -51.93 -0.40 0.34 16 33 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 34 H 0.06 0.94 3.45 -51.93 -0.18 0.76 16 35 H 0.06 1.16 7.52 -51.93 -0.39 0.77 16 36 H 0.07 0.83 8.04 -51.93 -0.42 0.42 16 37 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.09 1.38 7.73 -51.93 -0.40 0.97 16 41 H 0.06 0.84 6.68 -51.93 -0.35 0.49 16 LS Contribution 305.01 15.07 4.60 4.60 Total: -1.00 -28.74 305.01 -8.00 -36.74 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -6.84 Total: 0.52 kcal Atomic # 6 Polarization: -14.59 SS G_CDS: 0.00 Total: -14.59 kcal Atomic # 7 Polarization: -37.12 SS G_CDS: -0.33 Total: -37.46 kcal Atomic # 8 Polarization: -5.93 SS G_CDS: -0.40 Total: -6.33 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -28.74 -8.00 -36.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043419739.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.468 kcal (2) G-P(sol) polarization free energy of solvation -28.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds