Wall clock time and date at job start Sun Mar 29 2020 22:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.46864 * 2 1 4 4 C 1.53000 * 109.46784 * 119.99919 * 2 1 3 5 5 N 1.46905 * 109.46739 * 176.19989 * 4 2 1 6 6 C 1.46907 * 110.99777 * 315.84369 * 5 4 2 7 7 C 1.50700 * 109.47212 * 291.33885 * 6 5 4 8 8 H 1.08001 * 120.00010 * 4.92154 * 7 6 5 9 9 C 1.37870 * 120.00102 * 184.92036 * 7 6 5 10 10 N 1.31510 * 120.00047 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 120.00009 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47035 * 60.00206 * 11 9 7 13 13 H 1.48503 * 109.47315 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.47384 * 299.99949 * 11 9 7 15 15 C 1.46897 * 111.00588 * 79.79985 * 5 4 2 16 16 C 1.52999 * 109.47003 * 85.80265 * 15 5 4 17 17 H 1.09005 * 110.98683 * 59.00557 * 16 15 5 18 18 C 1.55449 * 111.14323 * 183.17668 * 16 15 5 19 19 C 1.54388 * 102.18504 * 151.99668 * 18 16 15 20 20 O 1.43244 * 107.66184 * 338.73920 * 19 18 16 21 21 C 1.43637 * 109.97160 * 358.24424 * 20 19 18 22 22 H 1.09001 * 109.47274 * 300.00183 * 1 2 3 23 23 H 1.08999 * 109.47481 * 60.00295 * 1 2 3 24 24 H 1.08997 * 109.47373 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47274 * 239.99817 * 2 1 3 26 26 H 1.09001 * 109.47153 * 74.21040 * 3 2 1 27 27 H 1.09007 * 109.47049 * 194.20750 * 3 2 1 28 28 H 1.08998 * 109.47062 * 314.20367 * 3 2 1 29 29 H 1.08996 * 109.47259 * 56.20040 * 4 2 1 30 30 H 1.08998 * 109.47197 * 296.19262 * 4 2 1 31 31 H 1.08991 * 109.46841 * 51.33811 * 6 5 4 32 32 H 1.09001 * 109.47010 * 171.34172 * 6 5 4 33 33 H 0.97004 * 120.00046 * 179.97438 * 10 9 7 34 34 H 1.09005 * 109.46880 * 325.80766 * 15 5 4 35 35 H 1.09000 * 109.47253 * 205.80799 * 15 5 4 36 36 H 1.09003 * 110.83873 * 33.84943 * 18 16 15 37 37 H 1.09004 * 110.92420 * 270.18134 * 18 16 15 38 38 H 1.08997 * 109.83088 * 219.18047 * 19 18 16 39 39 H 1.08995 * 109.83009 * 98.29684 * 19 18 16 40 40 H 1.08997 * 110.31251 * 143.34078 * 21 20 19 41 41 H 1.08997 * 110.31173 * 265.51054 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5061 -0.8012 1.2042 6 6 3.9711 -1.1930 -0.1331 7 6 3.5815 -2.6239 -0.4012 8 1 2.9743 -3.1611 0.3124 9 6 4.0001 -3.2473 -1.5575 10 7 4.7398 -2.5934 -2.4262 11 14 3.5178 -5.0212 -1.8894 12 1 2.0377 -5.1308 -1.9385 13 1 4.0891 -5.4544 -3.1899 14 1 4.0427 -5.8883 -0.8042 15 6 4.1158 0.4680 1.6227 16 6 4.2483 0.4921 3.1467 17 1 4.8597 -0.3388 3.4986 18 6 4.8169 1.8527 3.6387 19 6 4.2128 1.9654 5.0550 20 8 3.0644 1.1108 5.1069 21 6 2.8569 0.4896 3.8285 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8973 1.8783 0.9889 27 1 3.1003 1.4530 -0.2522 28 1 1.4855 2.0238 -0.7367 29 1 1.6220 -1.7273 1.2840 30 1 1.7333 -0.1695 2.1379 31 1 3.5133 -0.5457 -0.8809 32 1 5.0556 -1.0962 -0.1834 33 1 5.0347 -3.0321 -3.2396 34 1 3.4864 1.2973 1.2996 35 1 5.1030 0.5634 1.1705 36 1 4.4724 2.6692 3.0039 37 1 5.9057 1.8267 3.6823 38 1 3.9158 2.9960 5.2494 39 1 4.9454 1.6457 5.7959 40 1 2.5008 -0.5324 3.9577 41 1 2.1454 1.0672 3.2383 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043419739.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:46:00 Heat of formation + Delta-G solvation = -59.718847 kcal Electronic energy + Delta-G solvation = -18737.793507 eV Core-core repulsion = 16038.097078 eV Total energy + Delta-G solvation = -2699.696429 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.83586 -39.23771 -35.10364 -34.74001 -33.01967 -30.60311 -28.73209 -28.63250 -27.39921 -25.17390 -23.51965 -22.51335 -21.30957 -20.56383 -18.30511 -17.68381 -16.96362 -16.69166 -16.56824 -16.06998 -15.42049 -15.30678 -14.90121 -14.49445 -14.21899 -13.99724 -13.42893 -13.27814 -13.01440 -12.95330 -12.75653 -12.60578 -12.59707 -12.31341 -12.20554 -12.09515 -11.77935 -11.67737 -11.63243 -11.27456 -11.21118 -11.05159 -10.55008 -10.39164 -8.70814 -8.15648 -6.23861 1.40317 1.42505 1.50126 2.41602 2.96996 3.16093 3.36339 3.69729 3.94061 3.99222 4.09747 4.14438 4.25606 4.32204 4.42293 4.47032 4.61342 4.74774 4.78231 4.79653 4.83715 4.85836 4.93109 4.98208 5.00451 5.02783 5.13735 5.14562 5.21081 5.33122 5.39817 5.41624 5.50897 5.61347 5.74684 6.08602 6.15149 6.47825 6.76568 6.92332 7.44863 8.94005 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.025582 B = 0.006707 C = 0.006095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.274621 B = 4173.916278 C = 4593.126965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.138 4.138 3 C -0.141 4.141 4 C 0.066 3.934 5 N -0.544 5.544 6 C 0.204 3.796 7 C -0.513 4.513 8 H 0.055 0.945 9 C 0.004 3.996 10 N -0.934 5.934 11 Si 0.960 3.040 12 H -0.269 1.269 13 H -0.284 1.284 14 H -0.272 1.272 15 C 0.040 3.960 16 C -0.110 4.110 17 H 0.072 0.928 18 C -0.145 4.145 19 C 0.048 3.952 20 O -0.410 6.410 21 C 0.062 3.938 22 H 0.068 0.932 23 H 0.055 0.945 24 H 0.046 0.954 25 H 0.052 0.948 26 H 0.070 0.930 27 H 0.042 0.958 28 H 0.059 0.941 29 H 0.050 0.950 30 H 0.088 0.912 31 H -0.009 1.009 32 H -0.008 1.008 33 H 0.262 0.738 34 H 0.077 0.923 35 H 0.049 0.951 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.082 0.918 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.319 10.205 9.866 14.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.158 4.158 3 C -0.198 4.198 4 C -0.061 4.061 5 N -0.267 5.267 6 C 0.078 3.922 7 C -0.552 4.552 8 H 0.074 0.926 9 C -0.194 4.194 10 N -0.575 5.575 11 Si 0.785 3.215 12 H -0.194 1.194 13 H -0.210 1.210 14 H -0.197 1.197 15 C -0.088 4.088 16 C -0.129 4.129 17 H 0.090 0.910 18 C -0.183 4.183 19 C -0.028 4.028 20 O -0.330 6.330 21 C -0.014 4.014 22 H 0.087 0.913 23 H 0.074 0.926 24 H 0.066 0.934 25 H 0.070 0.930 26 H 0.089 0.911 27 H 0.061 0.939 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.106 0.894 31 H 0.009 0.991 32 H 0.010 0.990 33 H 0.071 0.929 34 H 0.095 0.905 35 H 0.068 0.932 36 H 0.104 0.896 37 H 0.111 0.889 38 H 0.100 0.900 39 H 0.093 0.907 40 H 0.097 0.903 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.193 9.784 10.217 14.754 hybrid contribution 0.132 -0.612 -1.450 1.580 sum -4.061 9.171 8.767 13.321 Atomic orbital electron populations 1.21691 0.93800 1.01481 1.02095 1.21744 0.97112 0.96660 1.00311 1.22040 1.00121 0.95690 1.01917 1.22310 0.87554 0.99454 0.96829 1.62142 1.06878 1.29302 1.28336 1.19530 0.93138 0.94741 0.84773 1.21412 1.31519 0.98325 1.03902 0.92637 1.25780 0.95307 1.02260 0.96063 1.70062 1.37625 1.38750 1.11096 0.85585 0.78710 0.80004 0.77210 1.19423 1.20989 1.19748 1.22576 0.99427 0.92668 0.94101 1.22790 0.96651 0.98144 0.95315 0.90987 1.23178 1.02262 0.96685 0.96181 1.23248 0.87516 0.94919 0.97114 1.88352 1.48528 1.62835 1.33293 1.23555 0.96763 0.97636 0.83426 0.91264 0.92553 0.93445 0.92990 0.91077 0.93933 0.92156 0.93182 0.89436 0.99104 0.98972 0.92931 0.90526 0.93196 0.89583 0.88924 0.89989 0.90694 0.90340 0.91500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.74 9.14 71.98 0.66 -3.08 16 2 C -0.14 -4.82 2.39 -10.80 -0.03 -4.84 16 3 C -0.14 -4.18 7.38 71.98 0.53 -3.65 16 4 C 0.07 2.40 4.39 86.30 0.38 2.78 16 5 N -0.54 -22.48 4.54 -900.78 -4.09 -26.57 16 6 C 0.20 10.55 4.01 85.56 0.34 10.89 16 7 C -0.51 -28.88 8.62 25.60 0.22 -28.66 16 8 H 0.06 3.11 7.19 -2.91 -0.02 3.09 16 9 C 0.00 0.20 5.46 84.65 0.46 0.66 16 10 N -0.93 -56.13 13.29 21.44 0.28 -55.84 16 11 Si 0.96 44.75 29.54 68.60 2.03 46.78 16 12 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 13 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 14 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 15 C 0.04 1.35 3.91 86.30 0.34 1.68 16 16 C -0.11 -3.11 3.35 -9.29 -0.03 -3.15 16 17 H 0.07 2.29 8.14 -2.38 -0.02 2.27 16 18 C -0.15 -3.09 6.52 31.91 0.21 -2.88 16 19 C 0.05 1.01 7.79 72.45 0.56 1.57 16 20 O -0.41 -11.37 11.36 -148.98 -1.69 -13.06 16 21 C 0.06 1.71 5.44 72.65 0.39 2.10 16 22 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 23 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 24 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.05 2.32 5.77 -2.39 -0.01 2.31 16 26 H 0.07 1.78 7.15 -2.39 -0.02 1.76 16 27 H 0.04 1.42 5.59 -2.38 -0.01 1.40 16 28 H 0.06 1.61 8.06 -2.39 -0.02 1.59 16 29 H 0.05 2.01 7.45 -2.39 -0.02 1.99 16 30 H 0.09 2.66 4.09 -2.39 -0.01 2.65 16 31 H -0.01 -0.46 4.84 -2.39 -0.01 -0.47 16 32 H -0.01 -0.45 7.71 -2.39 -0.02 -0.47 16 33 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 34 H 0.08 2.31 3.45 -2.38 -0.01 2.30 16 35 H 0.05 1.81 7.52 -2.39 -0.02 1.80 16 36 H 0.09 1.65 8.04 -2.39 -0.02 1.63 16 37 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.08 2.32 7.73 -2.39 -0.02 2.30 16 41 H 0.07 1.72 6.68 -2.39 -0.02 1.71 16 Total: -1.00 -63.26 305.01 1.57 -61.69 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: 0.99 Total: 13.57 kcal Atomic # 6 Polarization: -30.61 SS G_CDS: 4.04 Total: -26.56 kcal Atomic # 7 Polarization: -78.61 SS G_CDS: -3.80 Total: -82.41 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: -1.69 Total: -13.06 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -63.26 1.57 -61.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043419739.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.974 kcal (2) G-P(sol) polarization free energy of solvation -63.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds