Wall clock time and date at job start Sun Mar 29 2020 22:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47416 * 2 1 4 4 C 1.52996 * 109.47196 * 119.99986 * 2 1 3 5 5 N 1.46906 * 109.47107 * 61.43744 * 4 2 1 6 6 C 1.46902 * 111.00010 * 76.59619 * 5 4 2 7 7 C 1.50695 * 109.47395 * 282.75421 * 6 5 4 8 8 H 1.08009 * 119.99939 * 354.60052 * 7 6 5 9 9 C 1.37871 * 120.00349 * 174.61346 * 7 6 5 10 10 N 1.31518 * 120.00161 * 179.97438 * 9 7 6 11 11 Si 1.86805 * 119.99873 * 359.97438 * 9 7 6 12 12 H 1.48507 * 109.46476 * 90.00450 * 11 9 7 13 13 H 1.48501 * 109.47275 * 210.00240 * 11 9 7 14 14 H 1.48499 * 109.47176 * 330.01087 * 11 9 7 15 15 C 1.46902 * 111.00033 * 200.55170 * 5 4 2 16 16 C 1.53003 * 109.46815 * 76.13951 * 15 5 4 17 17 H 1.09001 * 110.33137 * 305.15284 * 16 15 5 18 18 C 1.54474 * 110.37050 * 182.90174 * 16 15 5 19 19 C 1.54511 * 104.06220 * 217.19064 * 18 16 15 20 20 C 1.54474 * 104.06235 * 359.97438 * 19 18 16 21 21 O 1.44421 * 104.80571 * 23.98013 * 20 19 18 22 22 H 1.09002 * 109.46900 * 304.81057 * 1 2 3 23 23 H 1.09004 * 109.47438 * 64.80812 * 1 2 3 24 24 H 1.08993 * 109.47187 * 184.80734 * 1 2 3 25 25 H 1.09006 * 109.46967 * 240.00361 * 2 1 3 26 26 H 1.08997 * 109.47953 * 180.02562 * 3 2 1 27 27 H 1.09003 * 109.47251 * 300.00389 * 3 2 1 28 28 H 1.09004 * 109.47283 * 59.99685 * 3 2 1 29 29 H 1.09005 * 109.47268 * 181.43666 * 4 2 1 30 30 H 1.09001 * 109.47452 * 301.43543 * 4 2 1 31 31 H 1.09003 * 109.46899 * 42.75025 * 6 5 4 32 32 H 1.09001 * 109.46879 * 162.75019 * 6 5 4 33 33 H 0.96999 * 119.99809 * 179.97438 * 10 9 7 34 34 H 1.08995 * 109.46857 * 196.13577 * 15 5 4 35 35 H 1.08996 * 109.46985 * 316.14410 * 15 5 4 36 36 H 1.09007 * 110.51306 * 335.83519 * 18 16 15 37 37 H 1.09000 * 110.51675 * 98.40585 * 18 16 15 38 38 H 1.09004 * 110.50853 * 118.64619 * 19 18 16 39 39 H 1.09003 * 110.51133 * 241.35206 * 19 18 16 40 40 H 1.08999 * 110.37258 * 142.80807 * 20 19 18 41 41 H 1.08998 * 110.37114 * 265.14396 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.5789 -2.1159 1.2320 6 6 2.3706 -2.9206 0.2920 7 6 1.9196 -2.6353 -1.1173 8 1 1.0679 -1.9946 -1.2925 9 6 2.5939 -3.1922 -2.1831 10 7 2.1999 -2.9436 -3.4130 11 14 4.0672 -4.3001 -1.8802 12 1 3.6104 -5.7075 -1.7539 13 1 5.0139 -4.1872 -3.0188 14 1 4.7483 -3.8865 -0.6271 15 6 1.6115 -2.6979 2.5804 16 6 0.4276 -2.1692 3.3928 17 1 0.4273 -1.0792 3.3963 18 6 0.4822 -2.7117 4.8381 19 6 -0.9983 -2.9655 5.2000 20 6 -1.7722 -2.5458 3.9307 21 8 -0.8153 -2.6718 2.8564 22 1 -0.3633 0.5867 0.8438 23 1 -0.3634 0.4374 -0.9299 24 1 -0.3633 -1.0240 0.0861 25 1 1.8933 -0.5138 -0.8901 26 1 3.1300 1.4426 -0.0005 27 1 1.6767 1.9564 -0.8900 28 1 1.6767 1.9564 0.8900 29 1 3.1297 -0.6990 1.2622 30 1 1.6558 -0.2225 2.1390 31 1 3.4255 -2.6657 0.3944 32 1 2.2296 -3.9789 0.5114 33 1 2.6746 -3.3352 -4.1628 34 1 1.5473 -3.7836 2.5091 35 1 2.5432 -2.4205 3.0734 36 1 1.0495 -3.6417 4.8759 37 1 0.9197 -1.9712 5.5077 38 1 -1.1629 -4.0210 5.4167 39 1 -1.2950 -2.3496 6.0490 40 1 -2.6188 -3.2120 3.7649 41 1 -2.1118 -1.5137 4.0173 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049800806.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:51 Heat of formation + Delta-G solvation = -50.041879 kcal Electronic energy + Delta-G solvation = -18640.476602 eV Core-core repulsion = 15941.199797 eV Total energy + Delta-G solvation = -2699.276804 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.26502 -37.26043 -33.70434 -32.50509 -31.87149 -30.07483 -27.55454 -26.32022 -25.61807 -23.64471 -21.65589 -20.65194 -20.42343 -19.05004 -16.71501 -16.22851 -15.48097 -15.32938 -14.92946 -14.31762 -13.97672 -13.59919 -13.48366 -12.93312 -12.55297 -12.45046 -12.14465 -11.83924 -11.65432 -11.53455 -11.29392 -11.18822 -11.07556 -10.96029 -10.60491 -10.43318 -10.29390 -10.05550 -9.91110 -9.81287 -9.58076 -9.31665 -8.93543 -8.43196 -7.21807 -5.96634 -3.90857 3.32389 3.39770 3.41276 4.14409 4.48369 4.63785 4.71587 4.94758 5.04610 5.27490 5.33831 5.41217 5.61502 5.66160 5.73758 5.75943 5.84144 5.85977 5.93222 6.00975 6.04531 6.09907 6.13792 6.29997 6.38128 6.38766 6.56992 6.65100 6.79398 6.83654 6.95725 7.07426 7.20457 7.42063 7.57402 7.75136 8.01457 8.18174 8.76822 9.16614 9.65553 11.15430 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.021479 B = 0.007655 C = 0.006501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.290041 B = 3656.838805 C = 4305.900228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.110 4.110 3 C -0.142 4.142 4 C 0.077 3.923 5 N -0.517 5.517 6 C 0.159 3.841 7 C -0.502 4.502 8 H 0.097 0.903 9 C 0.067 3.933 10 N -0.901 5.901 11 Si 0.868 3.132 12 H -0.278 1.278 13 H -0.288 1.288 14 H -0.269 1.269 15 C 0.058 3.942 16 C 0.085 3.915 17 H 0.064 0.936 18 C -0.153 4.153 19 C -0.154 4.154 20 C 0.040 3.960 21 O -0.344 6.344 22 H 0.027 0.973 23 H 0.036 0.964 24 H 0.076 0.924 25 H 0.121 0.879 26 H 0.044 0.956 27 H 0.049 0.951 28 H 0.038 0.962 29 H 0.021 0.979 30 H 0.047 0.953 31 H -0.009 1.009 32 H 0.019 0.981 33 H 0.262 0.738 34 H 0.075 0.925 35 H 0.035 0.965 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.086 0.914 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.912 3.328 15.614 16.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.128 4.128 3 C -0.200 4.200 4 C -0.051 4.051 5 N -0.240 5.240 6 C 0.033 3.967 7 C -0.540 4.540 8 H 0.115 0.885 9 C -0.134 4.134 10 N -0.540 5.540 11 Si 0.696 3.304 12 H -0.204 1.204 13 H -0.214 1.214 14 H -0.194 1.194 15 C -0.071 4.071 16 C 0.027 3.973 17 H 0.082 0.918 18 C -0.191 4.191 19 C -0.192 4.192 20 C -0.038 4.038 21 O -0.263 6.263 22 H 0.046 0.954 23 H 0.055 0.945 24 H 0.095 0.905 25 H 0.139 0.861 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.057 0.943 29 H 0.039 0.961 30 H 0.065 0.935 31 H 0.008 0.992 32 H 0.037 0.963 33 H 0.072 0.928 34 H 0.093 0.907 35 H 0.053 0.947 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.104 0.896 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.381 3.190 15.033 15.736 hybrid contribution 1.716 -0.546 0.653 1.915 sum -1.665 2.644 15.687 15.995 Atomic orbital electron populations 1.21594 0.95504 1.02696 0.98485 1.21514 0.96254 0.93811 1.01231 1.21828 1.00176 0.97664 1.00332 1.22009 0.96109 0.89475 0.97504 1.61841 1.55894 1.01618 1.04690 1.20316 0.90669 0.92555 0.93130 1.21261 1.15509 1.29762 0.87437 0.88517 1.24908 0.97060 0.96283 0.95188 1.69891 1.40958 1.45138 0.98022 0.86973 0.83730 0.81812 0.77878 1.20362 1.21389 1.19416 1.22139 0.93952 1.00020 0.90954 1.23016 0.86134 0.97594 0.90588 0.91780 1.23002 0.96858 1.02028 0.97261 1.22922 0.95389 1.02124 0.98741 1.23360 0.93462 1.00361 0.86613 1.89350 1.18738 1.84226 1.33944 0.95405 0.94531 0.90501 0.86125 0.93649 0.93196 0.94264 0.96085 0.93454 0.99165 0.96270 0.92838 0.90654 0.94662 0.90742 0.91005 0.90966 0.91106 0.89562 0.92872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.45 8.53 37.16 0.32 -2.14 16 2 C -0.11 -2.19 2.42 -90.62 -0.22 -2.41 16 3 C -0.14 -2.37 9.19 37.16 0.34 -2.03 16 4 C 0.08 1.49 4.24 -3.82 -0.02 1.47 16 5 N -0.52 -10.87 3.56 -236.07 -0.84 -11.71 16 6 C 0.16 3.88 3.87 -4.98 -0.02 3.86 16 7 C -0.50 -13.97 7.64 -34.44 -0.26 -14.23 16 8 H 0.10 2.88 5.51 -52.48 -0.29 2.59 16 9 C 0.07 1.91 5.47 -17.82 -0.10 1.82 16 10 N -0.90 -27.41 13.96 55.43 0.77 -26.63 16 11 Si 0.87 21.59 27.58 -169.99 -4.69 16.90 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 13 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 14 H -0.27 -6.48 6.39 56.52 0.36 -6.11 16 15 C 0.06 1.02 4.58 -3.82 -0.02 1.00 16 16 C 0.09 1.29 3.33 -25.96 -0.09 1.21 16 17 H 0.06 0.98 6.75 -51.93 -0.35 0.63 16 18 C -0.15 -1.78 6.63 -25.16 -0.17 -1.95 16 19 C -0.15 -1.60 7.09 -25.16 -0.18 -1.78 16 20 C 0.04 0.50 7.63 37.93 0.29 0.78 16 21 O -0.34 -5.96 11.34 -35.23 -0.40 -6.36 16 22 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 23 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.08 1.71 7.10 -51.93 -0.37 1.34 16 25 H 0.12 2.93 4.93 -51.93 -0.26 2.68 16 26 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.02 0.41 7.70 -51.93 -0.40 0.01 16 30 H 0.05 0.81 6.50 -51.93 -0.34 0.47 16 31 H -0.01 -0.23 6.37 -51.93 -0.33 -0.56 16 32 H 0.02 0.47 7.26 -51.93 -0.38 0.10 16 33 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 34 H 0.07 1.36 7.57 -51.93 -0.39 0.96 16 35 H 0.04 0.56 7.99 -51.93 -0.42 0.15 16 36 H 0.07 0.85 7.87 -51.93 -0.41 0.44 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 312.95 15.07 4.72 4.72 Total: -1.00 -30.25 312.95 -7.89 -38.14 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -7.33 Total: -0.64 kcal Atomic # 6 Polarization: -14.29 SS G_CDS: -0.12 Total: -14.41 kcal Atomic # 7 Polarization: -38.28 SS G_CDS: -0.07 Total: -38.35 kcal Atomic # 8 Polarization: -5.96 SS G_CDS: -0.40 Total: -6.36 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.69 Total: 16.90 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.25 -7.89 -38.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049800806.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.905 kcal (2) G-P(sol) polarization free energy of solvation -30.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds