Wall clock time and date at job start Sun Mar 29 2020 22:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47416 * 2 1 4 4 C 1.52996 * 109.47196 * 119.99986 * 2 1 3 5 5 N 1.46906 * 109.47107 * 61.43744 * 4 2 1 6 6 C 1.46902 * 111.00010 * 76.59619 * 5 4 2 7 7 C 1.50695 * 109.47395 * 282.75421 * 6 5 4 8 8 H 1.08009 * 119.99939 * 354.60052 * 7 6 5 9 9 C 1.37871 * 120.00349 * 174.61346 * 7 6 5 10 10 N 1.31518 * 120.00161 * 179.97438 * 9 7 6 11 11 Si 1.86805 * 119.99873 * 359.97438 * 9 7 6 12 12 H 1.48507 * 109.46476 * 90.00450 * 11 9 7 13 13 H 1.48501 * 109.47275 * 210.00240 * 11 9 7 14 14 H 1.48499 * 109.47176 * 330.01087 * 11 9 7 15 15 C 1.46902 * 111.00033 * 200.55170 * 5 4 2 16 16 C 1.53003 * 109.46815 * 76.13951 * 15 5 4 17 17 H 1.09001 * 110.33137 * 305.15284 * 16 15 5 18 18 C 1.54474 * 110.37050 * 182.90174 * 16 15 5 19 19 C 1.54511 * 104.06220 * 217.19064 * 18 16 15 20 20 C 1.54474 * 104.06235 * 359.97438 * 19 18 16 21 21 O 1.44421 * 104.80571 * 23.98013 * 20 19 18 22 22 H 1.09002 * 109.46900 * 304.81057 * 1 2 3 23 23 H 1.09004 * 109.47438 * 64.80812 * 1 2 3 24 24 H 1.08993 * 109.47187 * 184.80734 * 1 2 3 25 25 H 1.09006 * 109.46967 * 240.00361 * 2 1 3 26 26 H 1.08997 * 109.47953 * 180.02562 * 3 2 1 27 27 H 1.09003 * 109.47251 * 300.00389 * 3 2 1 28 28 H 1.09004 * 109.47283 * 59.99685 * 3 2 1 29 29 H 1.09005 * 109.47268 * 181.43666 * 4 2 1 30 30 H 1.09001 * 109.47452 * 301.43543 * 4 2 1 31 31 H 1.09003 * 109.46899 * 42.75025 * 6 5 4 32 32 H 1.09001 * 109.46879 * 162.75019 * 6 5 4 33 33 H 0.96999 * 119.99809 * 179.97438 * 10 9 7 34 34 H 1.08995 * 109.46857 * 196.13577 * 15 5 4 35 35 H 1.08996 * 109.46985 * 316.14410 * 15 5 4 36 36 H 1.09007 * 110.51306 * 335.83519 * 18 16 15 37 37 H 1.09000 * 110.51675 * 98.40585 * 18 16 15 38 38 H 1.09004 * 110.50853 * 118.64619 * 19 18 16 39 39 H 1.09003 * 110.51133 * 241.35206 * 19 18 16 40 40 H 1.08999 * 110.37258 * 142.80807 * 20 19 18 41 41 H 1.08998 * 110.37114 * 265.14396 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.5789 -2.1159 1.2320 6 6 2.3706 -2.9206 0.2920 7 6 1.9196 -2.6353 -1.1173 8 1 1.0679 -1.9946 -1.2925 9 6 2.5939 -3.1922 -2.1831 10 7 2.1999 -2.9436 -3.4130 11 14 4.0672 -4.3001 -1.8802 12 1 3.6104 -5.7075 -1.7539 13 1 5.0139 -4.1872 -3.0188 14 1 4.7483 -3.8865 -0.6271 15 6 1.6115 -2.6979 2.5804 16 6 0.4276 -2.1692 3.3928 17 1 0.4273 -1.0792 3.3963 18 6 0.4822 -2.7117 4.8381 19 6 -0.9983 -2.9655 5.2000 20 6 -1.7722 -2.5458 3.9307 21 8 -0.8153 -2.6718 2.8564 22 1 -0.3633 0.5867 0.8438 23 1 -0.3634 0.4374 -0.9299 24 1 -0.3633 -1.0240 0.0861 25 1 1.8933 -0.5138 -0.8901 26 1 3.1300 1.4426 -0.0005 27 1 1.6767 1.9564 -0.8900 28 1 1.6767 1.9564 0.8900 29 1 3.1297 -0.6990 1.2622 30 1 1.6558 -0.2225 2.1390 31 1 3.4255 -2.6657 0.3944 32 1 2.2296 -3.9789 0.5114 33 1 2.6746 -3.3352 -4.1628 34 1 1.5473 -3.7836 2.5091 35 1 2.5432 -2.4205 3.0734 36 1 1.0495 -3.6417 4.8759 37 1 0.9197 -1.9712 5.5077 38 1 -1.1629 -4.0210 5.4167 39 1 -1.2950 -2.3496 6.0490 40 1 -2.6188 -3.2120 3.7649 41 1 -2.1118 -1.5137 4.0173 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049800806.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:51 Heat of formation + Delta-G solvation = -69.712166 kcal Electronic energy + Delta-G solvation = -18641.329569 eV Core-core repulsion = 15941.199797 eV Total energy + Delta-G solvation = -2700.129772 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.42355 -38.80733 -35.26183 -34.59995 -32.90761 -31.48993 -29.33468 -27.81113 -26.98694 -25.20065 -22.96662 -22.03922 -21.70454 -20.70589 -18.75857 -17.32236 -16.78465 -16.68368 -16.33339 -16.11298 -15.50510 -15.16409 -14.56142 -14.50692 -14.41870 -14.04980 -13.49749 -13.31327 -13.09344 -12.92958 -12.63876 -12.61884 -12.48847 -12.26249 -12.13065 -11.92610 -11.73991 -11.61626 -11.49795 -11.37840 -11.22870 -10.93423 -10.60322 -10.50076 -8.85400 -8.17923 -6.16023 1.34833 1.35353 1.44856 2.38839 3.05179 3.12967 3.28655 3.78345 3.91673 4.06194 4.17597 4.21760 4.28545 4.43267 4.51422 4.55187 4.65100 4.71629 4.74214 4.79055 4.90274 4.91927 4.93084 4.99269 4.99677 5.03084 5.09511 5.18749 5.18864 5.26515 5.29878 5.45931 5.64151 5.76019 5.90695 6.12152 6.16119 6.55008 6.76919 6.91803 7.43669 8.97250 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.021479 B = 0.007655 C = 0.006501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.290041 B = 3656.838805 C = 4305.900228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.111 4.111 3 C -0.134 4.134 4 C 0.081 3.919 5 N -0.534 5.534 6 C 0.169 3.831 7 C -0.497 4.497 8 H 0.064 0.936 9 C 0.007 3.993 10 N -0.948 5.948 11 Si 0.934 3.066 12 H -0.272 1.272 13 H -0.285 1.285 14 H -0.254 1.254 15 C 0.056 3.944 16 C 0.085 3.915 17 H 0.065 0.935 18 C -0.147 4.147 19 C -0.146 4.146 20 C 0.031 3.969 21 O -0.389 6.389 22 H 0.054 0.946 23 H 0.030 0.970 24 H 0.042 0.958 25 H 0.070 0.930 26 H 0.049 0.951 27 H 0.049 0.951 28 H 0.066 0.934 29 H 0.019 0.981 30 H 0.076 0.924 31 H -0.011 1.011 32 H 0.016 0.984 33 H 0.262 0.738 34 H 0.064 0.936 35 H 0.056 0.944 36 H 0.075 0.925 37 H 0.095 0.905 38 H 0.077 0.923 39 H 0.096 0.904 40 H 0.092 0.908 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.273 3.780 18.683 19.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.130 4.130 3 C -0.192 4.192 4 C -0.047 4.047 5 N -0.257 5.257 6 C 0.042 3.958 7 C -0.536 4.536 8 H 0.082 0.918 9 C -0.190 4.190 10 N -0.590 5.590 11 Si 0.759 3.241 12 H -0.197 1.197 13 H -0.211 1.211 14 H -0.178 1.178 15 C -0.073 4.073 16 C 0.027 3.973 17 H 0.083 0.917 18 C -0.185 4.185 19 C -0.183 4.183 20 C -0.046 4.046 21 O -0.308 6.308 22 H 0.073 0.927 23 H 0.049 0.951 24 H 0.061 0.939 25 H 0.088 0.912 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.085 0.915 29 H 0.037 0.963 30 H 0.095 0.905 31 H 0.007 0.993 32 H 0.034 0.966 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.094 0.906 37 H 0.114 0.886 38 H 0.096 0.904 39 H 0.115 0.885 40 H 0.110 0.890 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.749 3.646 18.140 18.706 hybrid contribution 1.396 -0.630 -0.292 1.559 sum -1.354 3.016 17.847 18.151 Atomic orbital electron populations 1.21442 0.95423 1.00908 0.99313 1.21387 0.96311 0.95701 0.99568 1.21736 1.00427 0.95331 1.01709 1.22016 0.95972 0.88620 0.98096 1.61732 1.55460 1.02248 1.06308 1.20063 0.90780 0.92854 0.92065 1.21492 1.14194 1.28279 0.89606 0.91780 1.25728 1.00297 0.98108 0.94848 1.70044 1.42860 1.47049 0.99067 0.85914 0.80117 0.79773 0.78305 1.19745 1.21103 1.17761 1.22257 0.96247 0.99361 0.89388 1.23035 0.84615 0.97558 0.92134 0.91682 1.22984 0.97909 1.02594 0.95012 1.22905 0.94063 1.03050 0.98316 1.23592 0.93178 1.01244 0.86602 1.89308 1.20293 1.84640 1.36570 0.92709 0.95053 0.93883 0.91196 0.93210 0.93161 0.91515 0.96299 0.90547 0.99311 0.96620 0.92869 0.91778 0.92593 0.90626 0.88633 0.90377 0.88539 0.89007 0.91997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.48 8.53 71.98 0.61 -3.86 16 2 C -0.11 -4.44 2.42 -10.80 -0.03 -4.47 16 3 C -0.13 -4.27 9.19 71.98 0.66 -3.60 16 4 C 0.08 3.01 4.24 86.30 0.37 3.37 16 5 N -0.53 -22.31 3.56 -900.77 -3.21 -25.52 16 6 C 0.17 8.29 3.87 85.56 0.33 8.62 16 7 C -0.50 -28.69 7.64 25.60 0.20 -28.49 16 8 H 0.06 4.05 5.51 -2.91 -0.02 4.04 16 9 C 0.01 0.39 5.47 84.65 0.46 0.85 16 10 N -0.95 -59.93 13.96 21.45 0.30 -59.63 16 11 Si 0.93 45.07 27.58 68.60 1.89 46.97 16 12 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 13 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 14 H -0.25 -11.48 6.39 99.48 0.64 -10.84 16 15 C 0.06 1.86 4.58 86.30 0.40 2.25 16 16 C 0.08 2.40 3.33 31.10 0.10 2.50 16 17 H 0.07 1.80 6.75 -2.39 -0.02 1.79 16 18 C -0.15 -2.91 6.63 31.61 0.21 -2.70 16 19 C -0.15 -2.54 7.09 31.61 0.22 -2.32 16 20 C 0.03 0.71 7.63 72.48 0.55 1.26 16 21 O -0.39 -13.14 11.34 -148.98 -1.69 -14.83 16 22 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 23 H 0.03 1.21 8.14 -2.38 -0.02 1.19 16 24 H 0.04 1.97 7.10 -2.39 -0.02 1.95 16 25 H 0.07 3.55 4.93 -2.38 -0.01 3.54 16 26 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 29 H 0.02 0.71 7.70 -2.38 -0.02 0.69 16 30 H 0.08 2.40 6.50 -2.39 -0.02 2.39 16 31 H -0.01 -0.52 6.37 -2.39 -0.02 -0.54 16 32 H 0.02 0.78 7.26 -2.39 -0.02 0.76 16 33 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 34 H 0.06 2.26 7.57 -2.39 -0.02 2.24 16 35 H 0.06 1.63 7.99 -2.39 -0.02 1.61 16 36 H 0.07 1.49 7.87 -2.38 -0.02 1.47 16 37 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -68.01 312.95 2.28 -65.72 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: 0.90 Total: 13.88 kcal Atomic # 6 Polarization: -30.68 SS G_CDS: 4.09 Total: -26.59 kcal Atomic # 7 Polarization: -82.24 SS G_CDS: -2.91 Total: -85.15 kcal Atomic # 8 Polarization: -13.14 SS G_CDS: -1.69 Total: -14.83 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 1.89 Total: 46.97 kcal Total: -68.01 2.28 -65.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049800806.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.988 kcal (2) G-P(sol) polarization free energy of solvation -68.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds