Wall clock time and date at job start Sun Mar 29 2020 22:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47738 * 2 1 4 4 C 1.53002 * 109.47303 * 120.00394 * 2 1 3 5 5 N 1.46892 * 109.47400 * 177.54873 * 4 2 1 6 6 C 1.46894 * 111.00059 * 281.82195 * 5 4 2 7 7 C 1.50704 * 109.47369 * 79.25433 * 6 5 4 8 8 H 1.08005 * 119.99631 * 5.40319 * 7 6 5 9 9 C 1.37869 * 120.00325 * 185.12695 * 7 6 5 10 10 N 1.31512 * 120.00445 * 0.28004 * 9 7 6 11 11 Si 1.86805 * 120.00163 * 180.27361 * 9 7 6 12 12 H 1.48507 * 109.47003 * 0.02562 * 11 9 7 13 13 H 1.48501 * 109.46994 * 120.00026 * 11 9 7 14 14 H 1.48494 * 109.47614 * 240.00286 * 11 9 7 15 15 C 1.46904 * 110.99946 * 157.86751 * 5 4 2 16 16 C 1.52998 * 109.47270 * 288.46005 * 15 5 4 17 17 H 1.08999 * 110.27357 * 58.44926 * 16 15 5 18 18 C 1.54949 * 110.30764 * 180.64642 * 16 15 5 19 19 C 1.55303 * 100.93912 * 155.35965 * 18 16 15 20 20 C 1.54380 * 102.25335 * 325.86358 * 19 18 16 21 21 O 1.43232 * 107.58971 * 21.36045 * 20 19 18 22 22 H 1.09001 * 109.46730 * 300.00566 * 1 2 3 23 23 H 1.08999 * 109.47202 * 59.99924 * 1 2 3 24 24 H 1.09000 * 109.47641 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46730 * 239.99434 * 2 1 3 26 26 H 1.08997 * 109.47582 * 182.43508 * 3 2 1 27 27 H 1.09003 * 109.46724 * 302.43266 * 3 2 1 28 28 H 1.08995 * 109.47216 * 62.42814 * 3 2 1 29 29 H 1.08998 * 109.47126 * 57.54020 * 4 2 1 30 30 H 1.09002 * 109.46741 * 297.54694 * 4 2 1 31 31 H 1.09001 * 109.47060 * 319.25720 * 6 5 4 32 32 H 1.08997 * 109.47483 * 199.25634 * 6 5 4 33 33 H 0.96995 * 120.00734 * 180.02562 * 10 9 7 34 34 H 1.08995 * 109.47015 * 48.46316 * 15 5 4 35 35 H 1.09004 * 109.46893 * 168.46002 * 15 5 4 36 36 H 1.09003 * 111.12100 * 273.27715 * 18 16 15 37 37 H 1.08996 * 111.12486 * 37.44060 * 18 16 15 38 38 H 1.09000 * 110.84287 * 207.67448 * 19 18 16 39 39 H 1.08993 * 111.02434 * 84.13543 * 19 18 16 40 40 H 1.08997 * 109.83322 * 261.84248 * 20 19 18 41 41 H 1.09000 * 109.90429 * 140.91831 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5078 -0.7729 1.2200 6 6 3.9796 -1.8252 0.3102 7 6 3.9012 -1.3323 -1.1118 8 1 3.6209 -0.3090 -1.3139 9 6 4.1929 -2.1859 -2.1544 10 7 4.5343 -3.4319 -1.9085 11 14 4.1032 -1.5727 -3.9167 12 1 3.6992 -0.1437 -3.9236 13 1 5.4353 -1.7131 -4.5580 14 1 3.1046 -2.3735 -4.6693 15 6 4.0550 -0.9601 2.5704 16 6 3.8724 0.3267 3.3776 17 1 2.8167 0.5927 3.4305 18 6 4.4582 0.1557 4.8019 19 6 4.7628 1.6323 5.1745 20 6 5.1700 2.2363 3.8133 21 8 4.6274 1.3968 2.7875 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 3.1292 1.4427 -0.0437 27 1 1.6416 1.9687 -0.8674 28 1 1.7129 1.9435 0.9109 29 1 1.6412 -1.7355 1.2715 30 1 1.7130 -0.1827 2.1386 31 1 3.3536 -2.7104 0.4228 32 1 5.0123 -2.0775 0.5508 33 1 4.7399 -4.0324 -2.6419 34 1 3.5298 -1.7770 3.0651 35 1 5.1164 -1.1989 2.5024 36 1 3.7224 -0.2768 5.4799 37 1 5.3703 -0.4408 4.7825 38 1 5.5860 1.6907 5.8866 39 1 3.8754 2.1272 5.5686 40 1 6.2565 2.2649 3.7315 41 1 4.7657 3.2441 3.7188 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049800807.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:53 Heat of formation + Delta-G solvation = -55.515707 kcal Electronic energy + Delta-G solvation = -18628.680312 eV Core-core repulsion = 15929.166145 eV Total energy + Delta-G solvation = -2699.514167 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.23232 -37.12205 -33.68477 -32.54943 -31.87458 -29.90253 -27.01526 -26.35674 -25.59325 -23.66216 -21.64644 -20.99120 -20.24951 -18.93347 -16.59573 -16.33638 -15.55890 -14.94952 -14.67389 -14.31222 -14.09157 -13.49525 -13.13718 -13.02046 -12.65905 -12.30827 -12.07982 -11.64474 -11.58984 -11.55984 -11.17318 -11.13190 -10.98717 -10.94077 -10.69280 -10.45757 -10.39884 -10.10089 -10.00995 -9.80975 -9.35540 -9.00282 -8.98921 -8.30667 -7.07262 -5.93355 -3.91445 3.36363 3.44079 3.49719 4.10349 4.49529 4.60322 4.80352 4.97811 5.14532 5.32938 5.40214 5.42788 5.67945 5.71044 5.74320 5.79374 5.84754 5.87610 5.92796 6.05864 6.10858 6.16576 6.21659 6.35690 6.38685 6.51487 6.53573 6.64199 6.80942 6.90616 7.28186 7.34953 7.42131 7.48681 7.51554 7.97494 8.24289 8.34173 8.67035 9.16765 9.70376 11.17079 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.023803 B = 0.007073 C = 0.006378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.042189 B = 3957.806711 C = 4389.320456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.106 4.106 3 C -0.125 4.125 4 C 0.077 3.923 5 N -0.524 5.524 6 C 0.192 3.808 7 C -0.494 4.494 8 H 0.075 0.925 9 C 0.051 3.949 10 N -0.902 5.902 11 Si 0.891 3.109 12 H -0.270 1.270 13 H -0.286 1.286 14 H -0.286 1.286 15 C 0.057 3.943 16 C 0.090 3.910 17 H 0.064 0.936 18 C -0.154 4.154 19 C -0.155 4.155 20 C 0.046 3.954 21 O -0.352 6.352 22 H 0.040 0.960 23 H 0.047 0.953 24 H 0.046 0.954 25 H 0.111 0.889 26 H 0.074 0.926 27 H 0.031 0.969 28 H 0.032 0.968 29 H 0.021 0.979 30 H 0.045 0.955 31 H -0.004 1.004 32 H 0.021 0.979 33 H 0.258 0.742 34 H 0.032 0.968 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.063 0.937 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.991 7.924 12.182 14.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.124 4.124 3 C -0.182 4.182 4 C -0.051 4.051 5 N -0.248 5.248 6 C 0.067 3.933 7 C -0.532 4.532 8 H 0.093 0.907 9 C -0.149 4.149 10 N -0.543 5.543 11 Si 0.719 3.281 12 H -0.195 1.195 13 H -0.212 1.212 14 H -0.213 1.213 15 C -0.072 4.072 16 C 0.032 3.968 17 H 0.082 0.918 18 C -0.192 4.192 19 C -0.192 4.192 20 C -0.031 4.031 21 O -0.271 6.271 22 H 0.059 0.941 23 H 0.066 0.934 24 H 0.065 0.935 25 H 0.128 0.872 26 H 0.093 0.907 27 H 0.050 0.950 28 H 0.051 0.949 29 H 0.039 0.961 30 H 0.064 0.936 31 H 0.014 0.986 32 H 0.039 0.961 33 H 0.068 0.932 34 H 0.050 0.950 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.090 0.910 40 H 0.081 0.919 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.733 8.239 11.683 14.555 hybrid contribution -0.322 -0.630 -0.339 0.785 sum -3.055 7.608 11.344 13.997 Atomic orbital electron populations 1.21836 0.97345 1.00619 1.00309 1.21413 0.92711 0.97105 1.01212 1.21590 1.03023 0.95135 0.98468 1.21980 0.88762 0.97453 0.96917 1.62002 1.06804 1.50079 1.05923 1.19823 0.94865 0.87342 0.91299 1.21374 1.44135 0.97759 0.89969 0.90725 1.25003 0.95859 0.94905 0.99129 1.69969 1.47733 1.04924 1.31645 0.86544 0.77506 0.79075 0.84993 1.19487 1.21192 1.21270 1.22179 1.00689 0.93159 0.91160 1.23048 0.95015 0.88437 0.90271 0.91797 1.23317 1.01994 0.96627 0.97253 1.23089 1.01936 0.96079 0.98146 1.23077 0.98497 0.94621 0.86882 1.88648 1.69337 1.39646 1.29444 0.94096 0.93381 0.93470 0.87165 0.90721 0.94960 0.94912 0.96058 0.93643 0.98634 0.96075 0.93206 0.95038 0.90802 0.90406 0.90296 0.90556 0.90973 0.91901 0.92150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 9.19 37.16 0.34 -2.00 16 2 C -0.11 -2.08 2.46 -90.62 -0.22 -2.30 16 3 C -0.12 -2.36 8.68 37.16 0.32 -2.03 16 4 C 0.08 1.53 4.26 -3.83 -0.02 1.51 16 5 N -0.52 -11.42 3.70 -236.08 -0.87 -12.29 16 6 C 0.19 5.01 4.79 -4.98 -0.02 4.99 16 7 C -0.49 -13.74 7.18 -34.44 -0.25 -13.98 16 8 H 0.07 2.06 5.55 -52.48 -0.29 1.77 16 9 C 0.05 1.46 5.46 -17.82 -0.10 1.36 16 10 N -0.90 -27.00 13.29 55.43 0.74 -26.26 16 11 Si 0.89 21.91 29.54 -169.99 -5.02 16.88 16 12 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 13 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 14 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 15 C 0.06 1.05 4.66 -3.82 -0.02 1.03 16 16 C 0.09 1.41 3.42 -25.70 -0.09 1.32 16 17 H 0.06 1.00 6.53 -51.93 -0.34 0.66 16 18 C -0.15 -1.82 6.57 -24.48 -0.16 -1.99 16 19 C -0.15 -1.61 7.02 -24.79 -0.17 -1.79 16 20 C 0.05 0.60 7.79 37.88 0.30 0.90 16 21 O -0.35 -6.17 10.99 -35.23 -0.39 -6.56 16 22 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 23 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 24 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.11 2.57 5.04 -51.93 -0.26 2.30 16 26 H 0.07 1.61 7.25 -51.93 -0.38 1.23 16 27 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.02 0.44 7.64 -51.93 -0.40 0.04 16 30 H 0.05 0.81 6.20 -51.93 -0.32 0.48 16 31 H 0.00 -0.12 7.63 -51.93 -0.40 -0.51 16 32 H 0.02 0.59 7.58 -51.93 -0.39 0.20 16 33 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 34 H 0.03 0.55 8.06 -51.93 -0.42 0.13 16 35 H 0.07 1.42 7.66 -51.93 -0.40 1.02 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.08 0.93 8.06 -51.93 -0.42 0.51 16 38 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 317.25 15.07 4.78 4.78 Total: -1.00 -30.09 317.25 -8.23 -38.31 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -7.37 Total: -1.88 kcal Atomic # 6 Polarization: -12.89 SS G_CDS: -0.09 Total: -12.98 kcal Atomic # 7 Polarization: -38.41 SS G_CDS: -0.14 Total: -38.55 kcal Atomic # 8 Polarization: -6.17 SS G_CDS: -0.39 Total: -6.56 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.09 -8.23 -38.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049800807.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.204 kcal (2) G-P(sol) polarization free energy of solvation -30.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds