Wall clock time and date at job start Sun Mar 29 2020 22:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47738 * 2 1 4 4 C 1.53002 * 109.47303 * 120.00394 * 2 1 3 5 5 N 1.46892 * 109.47400 * 177.54873 * 4 2 1 6 6 C 1.46894 * 111.00059 * 281.82195 * 5 4 2 7 7 C 1.50704 * 109.47369 * 79.25433 * 6 5 4 8 8 H 1.08005 * 119.99631 * 5.40319 * 7 6 5 9 9 C 1.37869 * 120.00325 * 185.12695 * 7 6 5 10 10 N 1.31512 * 120.00445 * 0.28004 * 9 7 6 11 11 Si 1.86805 * 120.00163 * 180.27361 * 9 7 6 12 12 H 1.48507 * 109.47003 * 0.02562 * 11 9 7 13 13 H 1.48501 * 109.46994 * 120.00026 * 11 9 7 14 14 H 1.48494 * 109.47614 * 240.00286 * 11 9 7 15 15 C 1.46904 * 110.99946 * 157.86751 * 5 4 2 16 16 C 1.52998 * 109.47270 * 288.46005 * 15 5 4 17 17 H 1.08999 * 110.27357 * 58.44926 * 16 15 5 18 18 C 1.54949 * 110.30764 * 180.64642 * 16 15 5 19 19 C 1.55303 * 100.93912 * 155.35965 * 18 16 15 20 20 C 1.54380 * 102.25335 * 325.86358 * 19 18 16 21 21 O 1.43232 * 107.58971 * 21.36045 * 20 19 18 22 22 H 1.09001 * 109.46730 * 300.00566 * 1 2 3 23 23 H 1.08999 * 109.47202 * 59.99924 * 1 2 3 24 24 H 1.09000 * 109.47641 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46730 * 239.99434 * 2 1 3 26 26 H 1.08997 * 109.47582 * 182.43508 * 3 2 1 27 27 H 1.09003 * 109.46724 * 302.43266 * 3 2 1 28 28 H 1.08995 * 109.47216 * 62.42814 * 3 2 1 29 29 H 1.08998 * 109.47126 * 57.54020 * 4 2 1 30 30 H 1.09002 * 109.46741 * 297.54694 * 4 2 1 31 31 H 1.09001 * 109.47060 * 319.25720 * 6 5 4 32 32 H 1.08997 * 109.47483 * 199.25634 * 6 5 4 33 33 H 0.96995 * 120.00734 * 180.02562 * 10 9 7 34 34 H 1.08995 * 109.47015 * 48.46316 * 15 5 4 35 35 H 1.09004 * 109.46893 * 168.46002 * 15 5 4 36 36 H 1.09003 * 111.12100 * 273.27715 * 18 16 15 37 37 H 1.08996 * 111.12486 * 37.44060 * 18 16 15 38 38 H 1.09000 * 110.84287 * 207.67448 * 19 18 16 39 39 H 1.08993 * 111.02434 * 84.13543 * 19 18 16 40 40 H 1.08997 * 109.83322 * 261.84248 * 20 19 18 41 41 H 1.09000 * 109.90429 * 140.91831 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5078 -0.7729 1.2200 6 6 3.9796 -1.8252 0.3102 7 6 3.9012 -1.3323 -1.1118 8 1 3.6209 -0.3090 -1.3139 9 6 4.1929 -2.1859 -2.1544 10 7 4.5343 -3.4319 -1.9085 11 14 4.1032 -1.5727 -3.9167 12 1 3.6992 -0.1437 -3.9236 13 1 5.4353 -1.7131 -4.5580 14 1 3.1046 -2.3735 -4.6693 15 6 4.0550 -0.9601 2.5704 16 6 3.8724 0.3267 3.3776 17 1 2.8167 0.5927 3.4305 18 6 4.4582 0.1557 4.8019 19 6 4.7628 1.6323 5.1745 20 6 5.1700 2.2363 3.8133 21 8 4.6274 1.3968 2.7875 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 3.1292 1.4427 -0.0437 27 1 1.6416 1.9687 -0.8674 28 1 1.7129 1.9435 0.9109 29 1 1.6412 -1.7355 1.2715 30 1 1.7130 -0.1827 2.1386 31 1 3.3536 -2.7104 0.4228 32 1 5.0123 -2.0775 0.5508 33 1 4.7399 -4.0324 -2.6419 34 1 3.5298 -1.7770 3.0651 35 1 5.1164 -1.1989 2.5024 36 1 3.7224 -0.2768 5.4799 37 1 5.3703 -0.4408 4.7825 38 1 5.5860 1.6907 5.8866 39 1 3.8754 2.1272 5.5686 40 1 6.2565 2.2649 3.7315 41 1 4.7657 3.2441 3.7188 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049800807.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:52 Heat of formation + Delta-G solvation = -74.397920 kcal Electronic energy + Delta-G solvation = -18629.499106 eV Core-core repulsion = 15929.166145 eV Total energy + Delta-G solvation = -2700.332962 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.44172 -38.73248 -35.28717 -34.62323 -32.94174 -31.32009 -28.93434 -27.78296 -27.02979 -25.38849 -23.01280 -22.26819 -21.65461 -20.56407 -18.42603 -17.70653 -16.88690 -16.54197 -16.45771 -15.71414 -15.62601 -14.97671 -14.66830 -14.29814 -14.10507 -13.92338 -13.76340 -13.18243 -12.98717 -12.93285 -12.72005 -12.62342 -12.51581 -12.32543 -12.17032 -12.06881 -11.77713 -11.64172 -11.57975 -11.38605 -11.13131 -10.91316 -10.50360 -10.26679 -8.86203 -8.12802 -6.18460 1.40191 1.41428 1.54877 2.43282 2.97801 3.17868 3.37417 3.66680 3.91628 4.03504 4.14328 4.22867 4.31193 4.42607 4.50437 4.57852 4.66123 4.72964 4.75888 4.82785 4.89551 4.94798 4.95447 5.03598 5.08462 5.13530 5.15971 5.17568 5.25809 5.31577 5.34118 5.46820 5.69034 5.83632 5.88044 6.17305 6.33790 6.50052 6.75271 6.96747 7.47913 8.97541 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.023803 B = 0.007073 C = 0.006378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.042189 B = 3957.806711 C = 4389.320456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.108 4.108 3 C -0.113 4.113 4 C 0.080 3.920 5 N -0.531 5.531 6 C 0.208 3.792 7 C -0.498 4.498 8 H 0.074 0.926 9 C -0.003 4.003 10 N -0.940 5.940 11 Si 0.958 3.042 12 H -0.262 1.262 13 H -0.282 1.282 14 H -0.279 1.279 15 C 0.053 3.947 16 C 0.093 3.907 17 H 0.069 0.931 18 C -0.148 4.148 19 C -0.142 4.142 20 C 0.036 3.964 21 O -0.392 6.392 22 H 0.064 0.936 23 H 0.058 0.942 24 H 0.044 0.956 25 H 0.069 0.931 26 H 0.041 0.959 27 H 0.044 0.956 28 H 0.051 0.949 29 H 0.007 0.993 30 H 0.074 0.926 31 H -0.034 1.034 32 H -0.008 1.008 33 H 0.261 0.739 34 H 0.042 0.958 35 H 0.055 0.945 36 H 0.101 0.899 37 H 0.075 0.925 38 H 0.098 0.902 39 H 0.088 0.912 40 H 0.064 0.936 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.154 9.745 13.335 17.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.127 4.127 3 C -0.171 4.171 4 C -0.048 4.048 5 N -0.255 5.255 6 C 0.082 3.918 7 C -0.537 4.537 8 H 0.092 0.908 9 C -0.199 4.199 10 N -0.582 5.582 11 Si 0.783 3.217 12 H -0.186 1.186 13 H -0.208 1.208 14 H -0.205 1.205 15 C -0.075 4.075 16 C 0.035 3.965 17 H 0.087 0.913 18 C -0.186 4.186 19 C -0.180 4.180 20 C -0.041 4.041 21 O -0.312 6.312 22 H 0.083 0.917 23 H 0.077 0.923 24 H 0.064 0.936 25 H 0.087 0.913 26 H 0.060 0.940 27 H 0.063 0.937 28 H 0.070 0.930 29 H 0.025 0.975 30 H 0.092 0.908 31 H -0.017 1.017 32 H 0.010 0.990 33 H 0.069 0.931 34 H 0.060 0.940 35 H 0.074 0.926 36 H 0.119 0.881 37 H 0.094 0.906 38 H 0.117 0.883 39 H 0.107 0.893 40 H 0.082 0.918 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.899 10.080 12.858 16.797 hybrid contribution 0.063 -1.180 -0.640 1.343 sum -3.837 8.900 12.218 15.595 Atomic orbital electron populations 1.21748 0.94404 1.01122 1.02044 1.21344 0.95232 0.97005 0.99129 1.21450 1.00763 0.94877 0.99994 1.22027 0.87275 0.97127 0.98405 1.61957 1.08322 1.47895 1.07280 1.19464 0.92626 0.87499 0.92189 1.21627 1.43421 0.97694 0.90909 0.90800 1.25852 0.95560 0.95020 1.03501 1.70095 1.48927 1.06179 1.32984 0.85495 0.77610 0.78863 0.79717 1.18636 1.20801 1.20533 1.22293 0.99483 0.95767 0.89962 1.23003 0.95410 0.86466 0.91635 0.91349 1.23303 1.02257 0.98018 0.95018 1.23069 1.03479 0.94440 0.96987 1.23313 0.98601 0.94650 0.87520 1.88602 1.69821 1.40623 1.32117 0.91705 0.92278 0.93644 0.91262 0.94021 0.93733 0.92993 0.97476 0.90787 1.01662 0.99028 0.93063 0.93952 0.92629 0.88086 0.90620 0.88305 0.89317 0.91772 0.91082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.13 9.19 71.98 0.66 -3.47 16 2 C -0.11 -4.19 2.46 -10.79 -0.03 -4.22 16 3 C -0.11 -4.15 8.68 71.98 0.63 -3.52 16 4 C 0.08 3.13 4.26 86.31 0.37 3.50 16 5 N -0.53 -23.73 3.70 -900.82 -3.33 -27.06 16 6 C 0.21 11.46 4.79 85.56 0.41 11.87 16 7 C -0.50 -28.68 7.18 25.60 0.18 -28.49 16 8 H 0.07 4.20 5.55 -2.91 -0.02 4.19 16 9 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 10 N -0.94 -58.03 13.29 21.44 0.28 -57.74 16 11 Si 0.96 45.71 29.54 68.60 2.03 47.73 16 12 H -0.26 -12.06 7.11 99.48 0.71 -11.35 16 13 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 14 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 15 C 0.05 1.99 4.66 86.30 0.40 2.40 16 16 C 0.09 2.77 3.42 31.26 0.11 2.88 16 17 H 0.07 1.97 6.53 -2.39 -0.02 1.96 16 18 C -0.15 -3.13 6.57 32.05 0.21 -2.92 16 19 C -0.14 -2.49 7.02 31.85 0.22 -2.26 16 20 C 0.04 0.86 7.79 72.45 0.56 1.42 16 21 O -0.39 -13.48 10.99 -148.98 -1.64 -15.12 16 22 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 23 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 24 H 0.04 1.38 8.14 -2.39 -0.02 1.37 16 25 H 0.07 3.28 5.04 -2.39 -0.01 3.27 16 26 H 0.04 1.78 7.25 -2.39 -0.02 1.77 16 27 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.01 0.30 7.64 -2.39 -0.02 0.28 16 30 H 0.07 2.48 6.20 -2.39 -0.01 2.47 16 31 H -0.03 -2.05 7.63 -2.39 -0.02 -2.07 16 32 H -0.01 -0.50 7.58 -2.39 -0.02 -0.52 16 33 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 34 H 0.04 1.47 8.06 -2.39 -0.02 1.45 16 35 H 0.06 2.23 7.66 -2.38 -0.02 2.22 16 36 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.08 1.66 8.06 -2.39 -0.02 1.64 16 38 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -67.30 317.25 2.51 -64.79 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: 0.97 Total: 9.91 kcal Atomic # 6 Polarization: -26.70 SS G_CDS: 4.19 Total: -22.51 kcal Atomic # 7 Polarization: -81.76 SS G_CDS: -3.04 Total: -84.81 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: -1.64 Total: -15.12 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.73 kcal Total: -67.30 2.51 -64.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049800807.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.603 kcal (2) G-P(sol) polarization free energy of solvation -67.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds