Wall clock time and date at job start Sun Mar 29 2020 23:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47411 * 2 1 4 4 H 1.08999 * 109.46766 * 55.08473 * 3 2 1 5 5 C 1.50701 * 109.46828 * 175.08094 * 3 2 1 6 6 H 1.07999 * 120.00081 * 120.00653 * 5 3 2 7 7 C 1.37881 * 120.00427 * 300.00208 * 5 3 2 8 8 N 1.31510 * 120.00170 * 180.02562 * 7 5 3 9 9 Si 1.86802 * 119.99508 * 0.02562 * 7 5 3 10 10 H 1.48497 * 109.47131 * 90.00372 * 9 7 5 11 11 H 1.48505 * 109.46773 * 210.00024 * 9 7 5 12 12 H 1.48503 * 109.47290 * 329.99979 * 9 7 5 13 13 N 1.46897 * 109.47401 * 295.08560 * 3 2 1 14 14 C 1.46857 * 110.99411 * 294.29207 * 13 3 2 15 15 C 1.53044 * 109.51776 * 174.16163 * 14 13 3 16 16 C 1.53115 * 109.27781 * 59.18030 * 15 14 13 17 17 C 1.53116 * 109.15641 * 302.33872 * 16 15 14 18 18 H 1.09010 * 109.51197 * 297.72929 * 17 16 15 19 19 C 1.52994 * 109.49773 * 177.60698 * 17 16 15 20 20 C 1.53000 * 109.47323 * 65.20445 * 19 17 16 21 21 O 1.42895 * 109.47362 * 180.02562 * 20 19 17 22 22 C 1.46846 * 111.00015 * 170.08498 * 13 3 2 23 23 H 1.09002 * 109.46816 * 59.99591 * 1 2 3 24 24 H 1.08991 * 109.47403 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46597 * 299.99884 * 1 2 3 26 26 H 1.09001 * 109.46597 * 240.00116 * 2 1 3 27 27 H 1.08998 * 109.47073 * 120.00846 * 2 1 3 28 28 H 0.97000 * 119.99754 * 180.02562 * 8 7 5 29 29 H 1.08993 * 109.46107 * 294.17269 * 14 13 3 30 30 H 1.08995 * 109.45890 * 54.16188 * 14 13 3 31 31 H 1.09001 * 109.50063 * 179.12350 * 15 14 13 32 32 H 1.09000 * 109.50026 * 299.20186 * 15 14 13 33 33 H 1.09000 * 109.52692 * 62.25136 * 16 15 14 34 34 H 1.09005 * 109.52253 * 182.37534 * 16 15 14 35 35 H 1.09003 * 109.46937 * 185.19952 * 19 17 16 36 36 H 1.08998 * 109.47240 * 305.19808 * 19 17 16 37 37 H 1.09003 * 109.46987 * 300.00120 * 20 19 17 38 38 H 1.08998 * 109.47482 * 59.99512 * 20 19 17 39 39 H 0.96703 * 113.99870 * 179.97438 * 21 20 19 40 40 H 1.08998 * 109.46309 * 305.85465 * 22 13 3 41 41 H 1.09007 * 109.46196 * 65.83104 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6066 1.9810 0.8427 5 6 3.5422 1.4440 0.1218 6 1 4.1465 1.8890 -0.6548 7 6 4.1451 0.8775 1.2249 8 7 5.4558 0.8794 1.3314 9 14 3.0998 0.1073 2.5680 10 1 2.8786 -1.3286 2.2608 11 1 3.7989 0.2325 3.8722 12 1 1.7912 0.8058 2.6387 13 7 1.6498 2.0999 -1.2543 14 6 2.3246 1.4833 -2.4037 15 6 1.7867 2.0934 -3.7001 16 6 2.0350 3.6042 -3.6889 17 6 1.3626 4.2148 -2.4562 18 1 0.2856 4.0556 -2.5126 19 6 1.6560 5.7154 -2.4052 20 6 0.9983 6.4048 -3.6023 21 8 1.2728 7.8063 -3.5549 22 6 1.9128 3.5434 -1.1958 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3632 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5140 0.8899 28 1 5.8799 0.4805 2.1072 29 1 3.3972 1.6641 -2.3349 30 1 2.1363 0.4097 -2.4023 31 1 2.2988 1.6467 -4.5524 32 1 0.7166 1.9004 -3.7765 33 1 3.1072 3.7969 -3.6521 34 1 1.6158 4.0490 -4.5915 35 1 1.2560 6.1326 -1.4809 36 1 2.7335 5.8764 -2.4401 37 1 1.3981 5.9876 -4.5265 38 1 -0.0792 6.2438 -3.5674 39 1 0.8859 8.3078 -4.2856 40 1 1.4258 3.9660 -0.3170 41 1 2.9875 3.7145 -1.1329 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051916374.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:01:18 Heat of formation + Delta-G solvation = -64.637026 kcal Electronic energy + Delta-G solvation = -18603.305597 eV Core-core repulsion = 15903.395900 eV Total energy + Delta-G solvation = -2699.909697 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.93665 -37.03933 -35.23357 -32.46077 -31.82722 -30.94960 -27.98615 -26.95170 -24.06151 -22.96915 -22.04381 -21.28715 -19.43859 -19.00027 -17.33659 -16.58374 -15.59136 -15.32824 -14.70341 -14.29703 -13.83679 -13.67896 -13.26412 -13.12323 -13.05329 -12.61668 -12.21627 -11.86891 -11.65100 -11.51672 -11.32865 -11.19672 -10.99534 -10.71082 -10.50994 -10.40392 -10.16273 -10.00592 -9.92037 -9.61635 -9.52103 -9.42610 -9.16285 -8.55342 -7.11653 -6.10703 -4.11129 3.26318 3.37506 3.39706 4.16818 4.38368 4.91975 4.98432 5.14904 5.20532 5.29605 5.34923 5.46924 5.53418 5.80869 5.93766 5.98389 6.01930 6.04026 6.07300 6.16499 6.23821 6.29708 6.30691 6.39041 6.50132 6.52819 6.66028 6.71478 6.78291 6.85839 6.92966 6.99070 7.13207 7.26958 7.56098 7.59106 8.13997 8.20925 8.47192 8.91965 9.53067 11.02097 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.027899 B = 0.006599 C = 0.006158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.374486 B = 4242.079888 C = 4546.109565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.120 4.120 3 C 0.181 3.819 4 H 0.037 0.963 5 C -0.543 4.543 6 H 0.076 0.924 7 C 0.073 3.927 8 N -0.899 5.899 9 Si 0.887 3.113 10 H -0.279 1.279 11 H -0.299 1.299 12 H -0.264 1.264 13 N -0.526 5.526 14 C 0.058 3.942 15 C -0.116 4.116 16 C -0.114 4.114 17 C -0.080 4.080 18 H 0.072 0.928 19 C -0.114 4.114 20 C 0.076 3.924 21 O -0.577 6.577 22 C 0.070 3.930 23 H 0.062 0.938 24 H 0.032 0.968 25 H 0.041 0.959 26 H 0.058 0.942 27 H 0.046 0.954 28 H 0.263 0.737 29 H 0.044 0.956 30 H 0.068 0.932 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.053 0.947 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.046 0.954 38 H 0.043 0.957 39 H 0.375 0.625 40 H 0.062 0.938 41 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.985 5.804 -9.512 14.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.158 4.158 3 C 0.073 3.927 4 H 0.055 0.945 5 C -0.582 4.582 6 H 0.094 0.906 7 C -0.129 4.129 8 N -0.536 5.536 9 Si 0.718 3.282 10 H -0.206 1.206 11 H -0.227 1.227 12 H -0.189 1.189 13 N -0.249 5.249 14 C -0.070 4.070 15 C -0.154 4.154 16 C -0.152 4.152 17 C -0.099 4.099 18 H 0.091 0.909 19 C -0.152 4.152 20 C -0.002 4.002 21 O -0.382 6.382 22 C -0.059 4.059 23 H 0.081 0.919 24 H 0.051 0.949 25 H 0.060 0.940 26 H 0.077 0.923 27 H 0.064 0.936 28 H 0.073 0.927 29 H 0.062 0.938 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.071 0.929 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.064 0.936 38 H 0.061 0.939 39 H 0.221 0.779 40 H 0.081 0.919 41 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -10.015 5.497 -8.908 14.487 hybrid contribution 0.258 -0.313 0.435 0.594 sum -9.757 5.185 -8.473 13.924 Atomic orbital electron populations 1.21730 0.97429 0.99275 1.01611 1.21916 0.93997 0.99358 1.00545 1.19696 0.94502 0.90534 0.87954 0.94533 1.21641 0.90661 1.38824 1.07078 0.90562 1.24988 0.94711 0.95373 0.97843 1.69917 1.08804 1.45125 1.29792 0.86856 0.80704 0.79820 0.80865 1.20565 1.22655 1.18892 1.62273 1.56955 1.01853 1.03845 1.21949 0.97279 0.98441 0.89312 1.21622 1.01072 0.95030 0.97711 1.21659 1.00486 0.96052 0.96966 1.21132 1.00542 0.92260 0.95964 0.90922 1.21530 1.01519 0.94652 0.97536 1.22293 0.98436 0.80606 0.98825 1.86501 1.79103 1.20043 1.52586 1.21854 0.99285 0.89212 0.95557 0.91931 0.94878 0.94030 0.92287 0.93621 0.92703 0.93776 0.91414 0.92601 0.92055 0.92270 0.92872 0.91310 0.91288 0.93570 0.93898 0.77935 0.91919 0.94022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 9.80 37.16 0.36 -2.24 16 2 C -0.12 -2.60 4.82 -26.73 -0.13 -2.73 16 3 C 0.18 4.19 1.30 -68.87 -0.09 4.10 16 4 H 0.04 0.90 7.05 -51.93 -0.37 0.53 16 5 C -0.54 -14.80 7.81 -34.44 -0.27 -15.07 16 6 H 0.08 2.27 6.09 -52.49 -0.32 1.95 16 7 C 0.07 2.09 5.45 -17.82 -0.10 1.99 16 8 N -0.90 -27.29 13.96 55.43 0.77 -26.52 16 9 Si 0.89 21.96 24.41 -169.99 -4.15 17.81 16 10 H -0.28 -6.75 6.83 56.52 0.39 -6.36 16 11 H -0.30 -7.46 7.11 56.52 0.40 -7.06 16 12 H -0.26 -6.28 6.53 56.52 0.37 -5.91 16 13 N -0.53 -10.50 4.06 -228.08 -0.92 -11.42 16 14 C 0.06 1.11 4.79 -3.82 -0.02 1.09 16 15 C -0.12 -1.75 6.09 -26.65 -0.16 -1.91 16 16 C -0.11 -1.61 4.98 -26.61 -0.13 -1.74 16 17 C -0.08 -1.18 2.35 -90.54 -0.21 -1.39 16 18 H 0.07 1.05 8.14 -51.92 -0.42 0.62 16 19 C -0.11 -1.56 5.05 -26.73 -0.14 -1.70 16 20 C 0.08 0.86 6.81 37.16 0.25 1.12 16 21 O -0.58 -6.76 13.66 -35.23 -0.48 -7.25 16 22 C 0.07 1.30 4.47 -3.83 -0.02 1.28 16 23 H 0.06 1.09 7.75 -51.93 -0.40 0.69 16 24 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.06 1.26 6.22 -51.93 -0.32 0.93 16 27 H 0.05 1.06 3.21 -51.93 -0.17 0.89 16 28 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 29 H 0.04 0.96 6.38 -51.93 -0.33 0.63 16 30 H 0.07 1.30 6.12 -51.93 -0.32 0.98 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.05 0.63 6.70 -51.93 -0.35 0.28 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.05 0.48 6.63 -51.93 -0.34 0.14 16 38 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.37 2.48 9.12 45.56 0.42 2.90 16 40 H 0.06 1.18 8.02 -51.93 -0.42 0.76 16 41 H 0.04 0.89 7.29 -51.92 -0.38 0.51 16 LS Contribution 302.42 15.07 4.56 4.56 Total: -1.00 -30.30 302.42 -7.16 -37.46 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -6.29 Total: 2.56 kcal Atomic # 6 Polarization: -16.56 SS G_CDS: -0.65 Total: -17.20 kcal Atomic # 7 Polarization: -37.79 SS G_CDS: -0.15 Total: -37.94 kcal Atomic # 8 Polarization: -6.76 SS G_CDS: -0.48 Total: -7.25 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.15 Total: 17.81 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -30.30 -7.16 -37.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051916374.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.178 kcal (2) G-P(sol) polarization free energy of solvation -30.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds