Wall clock time and date at job start Sun Mar 29 2020 23:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47411 * 2 1 4 4 H 1.08999 * 109.46766 * 55.08473 * 3 2 1 5 5 C 1.50701 * 109.46828 * 175.08094 * 3 2 1 6 6 H 1.07999 * 120.00081 * 120.00653 * 5 3 2 7 7 C 1.37881 * 120.00427 * 300.00208 * 5 3 2 8 8 N 1.31510 * 120.00170 * 180.02562 * 7 5 3 9 9 Si 1.86802 * 119.99508 * 0.02562 * 7 5 3 10 10 H 1.48497 * 109.47131 * 90.00372 * 9 7 5 11 11 H 1.48505 * 109.46773 * 210.00024 * 9 7 5 12 12 H 1.48503 * 109.47290 * 329.99979 * 9 7 5 13 13 N 1.46897 * 109.47401 * 295.08560 * 3 2 1 14 14 C 1.46857 * 110.99411 * 294.29207 * 13 3 2 15 15 C 1.53044 * 109.51776 * 174.16163 * 14 13 3 16 16 C 1.53115 * 109.27781 * 59.18030 * 15 14 13 17 17 C 1.53116 * 109.15641 * 302.33872 * 16 15 14 18 18 H 1.09010 * 109.51197 * 297.72929 * 17 16 15 19 19 C 1.52994 * 109.49773 * 177.60698 * 17 16 15 20 20 C 1.53000 * 109.47323 * 65.20445 * 19 17 16 21 21 O 1.42895 * 109.47362 * 180.02562 * 20 19 17 22 22 C 1.46846 * 111.00015 * 170.08498 * 13 3 2 23 23 H 1.09002 * 109.46816 * 59.99591 * 1 2 3 24 24 H 1.08991 * 109.47403 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46597 * 299.99884 * 1 2 3 26 26 H 1.09001 * 109.46597 * 240.00116 * 2 1 3 27 27 H 1.08998 * 109.47073 * 120.00846 * 2 1 3 28 28 H 0.97000 * 119.99754 * 180.02562 * 8 7 5 29 29 H 1.08993 * 109.46107 * 294.17269 * 14 13 3 30 30 H 1.08995 * 109.45890 * 54.16188 * 14 13 3 31 31 H 1.09001 * 109.50063 * 179.12350 * 15 14 13 32 32 H 1.09000 * 109.50026 * 299.20186 * 15 14 13 33 33 H 1.09000 * 109.52692 * 62.25136 * 16 15 14 34 34 H 1.09005 * 109.52253 * 182.37534 * 16 15 14 35 35 H 1.09003 * 109.46937 * 185.19952 * 19 17 16 36 36 H 1.08998 * 109.47240 * 305.19808 * 19 17 16 37 37 H 1.09003 * 109.46987 * 300.00120 * 20 19 17 38 38 H 1.08998 * 109.47482 * 59.99512 * 20 19 17 39 39 H 0.96703 * 113.99870 * 179.97438 * 21 20 19 40 40 H 1.08998 * 109.46309 * 305.85465 * 22 13 3 41 41 H 1.09007 * 109.46196 * 65.83104 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6066 1.9810 0.8427 5 6 3.5422 1.4440 0.1218 6 1 4.1465 1.8890 -0.6548 7 6 4.1451 0.8775 1.2249 8 7 5.4558 0.8794 1.3314 9 14 3.0998 0.1073 2.5680 10 1 2.8786 -1.3286 2.2608 11 1 3.7989 0.2325 3.8722 12 1 1.7912 0.8058 2.6387 13 7 1.6498 2.0999 -1.2543 14 6 2.3246 1.4833 -2.4037 15 6 1.7867 2.0934 -3.7001 16 6 2.0350 3.6042 -3.6889 17 6 1.3626 4.2148 -2.4562 18 1 0.2856 4.0556 -2.5126 19 6 1.6560 5.7154 -2.4052 20 6 0.9983 6.4048 -3.6023 21 8 1.2728 7.8063 -3.5549 22 6 1.9128 3.5434 -1.1958 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3632 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5140 0.8899 28 1 5.8799 0.4805 2.1072 29 1 3.3972 1.6641 -2.3349 30 1 2.1363 0.4097 -2.4023 31 1 2.2988 1.6467 -4.5524 32 1 0.7166 1.9004 -3.7765 33 1 3.1072 3.7969 -3.6521 34 1 1.6158 4.0490 -4.5915 35 1 1.2560 6.1326 -1.4809 36 1 2.7335 5.8764 -2.4401 37 1 1.3981 5.9876 -4.5265 38 1 -0.0792 6.2438 -3.5674 39 1 0.8859 8.3078 -4.2856 40 1 1.4258 3.9660 -0.3170 41 1 2.9875 3.7145 -1.1329 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051916374.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:01:18 Heat of formation + Delta-G solvation = -87.511142 kcal Electronic energy + Delta-G solvation = -18604.297493 eV Core-core repulsion = 15903.395900 eV Total energy + Delta-G solvation = -2700.901594 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.40542 -38.11053 -36.66450 -34.30339 -33.44401 -32.40405 -29.34324 -28.70154 -25.60072 -24.45393 -23.54879 -22.61574 -20.89456 -20.65049 -18.58869 -18.23709 -17.36652 -16.38613 -16.15398 -15.93954 -15.35698 -14.97434 -14.90408 -14.47472 -14.41842 -14.33898 -13.72769 -13.49552 -13.27142 -12.92119 -12.76512 -12.61295 -12.51176 -12.19982 -12.09519 -11.80822 -11.69444 -11.50705 -11.34284 -11.25648 -11.00768 -10.97776 -10.73067 -10.61854 -8.90046 -8.33194 -6.37197 1.27697 1.33265 1.43844 2.28903 3.01887 3.12652 3.56742 3.82860 3.99194 4.10636 4.26322 4.35302 4.36958 4.45700 4.53733 4.57799 4.63650 4.67773 4.74664 4.78873 4.91939 4.95819 5.03972 5.05586 5.08971 5.15151 5.19015 5.23524 5.30413 5.36876 5.41176 5.47251 5.50606 5.62705 5.65326 6.15747 6.40529 6.54517 6.72096 6.96970 7.31152 8.83404 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.027899 B = 0.006599 C = 0.006158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.374486 B = 4242.079888 C = 4546.109565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.120 4.120 3 C 0.182 3.818 4 H 0.027 0.973 5 C -0.537 4.537 6 H 0.033 0.967 7 C 0.014 3.986 8 N -0.949 5.949 9 Si 0.949 3.051 10 H -0.265 1.265 11 H -0.302 1.302 12 H -0.246 1.246 13 N -0.512 5.512 14 C 0.059 3.941 15 C -0.107 4.107 16 C -0.112 4.112 17 C -0.066 4.066 18 H 0.091 0.909 19 C -0.113 4.113 20 C 0.081 3.919 21 O -0.600 6.600 22 C 0.068 3.932 23 H 0.071 0.929 24 H 0.057 0.943 25 H 0.043 0.957 26 H 0.056 0.944 27 H 0.032 0.968 28 H 0.264 0.736 29 H 0.002 0.998 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.039 0.961 34 H 0.090 0.910 35 H 0.060 0.940 36 H 0.047 0.953 37 H 0.060 0.940 38 H 0.063 0.937 39 H 0.397 0.603 40 H 0.058 0.942 41 H 0.000 1.000 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.296 5.738 -10.789 18.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.158 4.158 3 C 0.074 3.926 4 H 0.045 0.955 5 C -0.576 4.576 6 H 0.051 0.949 7 C -0.184 4.184 8 N -0.590 5.590 9 Si 0.776 3.224 10 H -0.191 1.191 11 H -0.230 1.230 12 H -0.170 1.170 13 N -0.235 5.235 14 C -0.069 4.069 15 C -0.145 4.145 16 C -0.149 4.149 17 C -0.085 4.085 18 H 0.110 0.890 19 C -0.152 4.152 20 C 0.004 3.996 21 O -0.408 6.408 22 C -0.060 4.060 23 H 0.090 0.910 24 H 0.076 0.924 25 H 0.062 0.938 26 H 0.075 0.925 27 H 0.051 0.949 28 H 0.073 0.927 29 H 0.020 0.980 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.099 0.901 33 H 0.058 0.942 34 H 0.109 0.891 35 H 0.079 0.921 36 H 0.066 0.934 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.247 0.753 40 H 0.077 0.923 41 H 0.019 0.981 Dipole moment (debyes) X Y Z Total from point charges -13.356 5.449 -10.221 17.678 hybrid contribution 1.375 -0.211 0.767 1.588 sum -11.981 5.238 -9.453 16.135 Atomic orbital electron populations 1.21640 0.94115 1.01143 1.02183 1.21832 0.96885 0.97272 0.99821 1.19607 0.91362 0.92277 0.89376 0.95500 1.21911 0.92975 1.37175 1.05578 0.94869 1.25850 0.95756 0.96259 1.00498 1.70072 1.10871 1.47133 1.30892 0.85845 0.79546 0.79633 0.77370 1.19147 1.22987 1.16978 1.62352 1.56052 1.02286 1.02837 1.21989 0.94978 0.98755 0.91211 1.21582 1.02137 0.95306 0.95483 1.21670 0.99522 0.95659 0.98084 1.21010 1.01190 0.92495 0.93833 0.89038 1.21470 1.00529 0.94254 0.98906 1.22203 0.99239 0.80465 0.97677 1.86440 1.79768 1.20378 1.54251 1.21928 0.97000 0.88975 0.98136 0.91015 0.92386 0.93796 0.92489 0.94941 0.92711 0.98014 0.91678 0.90793 0.90056 0.94248 0.89148 0.92098 0.93372 0.92146 0.91911 0.75305 0.92334 0.98114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.41 9.80 71.98 0.71 -3.71 16 2 C -0.12 -5.03 4.82 30.59 0.15 -4.89 16 3 C 0.18 8.50 1.30 44.17 0.06 8.56 16 4 H 0.03 1.32 7.05 -2.39 -0.02 1.30 16 5 C -0.54 -30.68 7.81 25.60 0.20 -30.48 16 6 H 0.03 2.14 6.09 -2.91 -0.02 2.12 16 7 C 0.01 0.82 5.45 84.66 0.46 1.28 16 8 N -0.95 -60.34 13.96 21.45 0.30 -60.04 16 9 Si 0.95 45.76 24.41 68.60 1.67 47.44 16 10 H -0.27 -12.17 6.83 99.48 0.68 -11.49 16 11 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 12 H -0.25 -11.03 6.53 99.48 0.65 -10.38 16 13 N -0.51 -20.41 4.06 -875.50 -3.55 -23.96 16 14 C 0.06 2.25 4.79 86.33 0.41 2.66 16 15 C -0.11 -2.97 6.09 30.65 0.19 -2.78 16 16 C -0.11 -2.92 4.98 30.67 0.15 -2.76 16 17 C -0.07 -1.86 2.35 -10.74 -0.03 -1.88 16 18 H 0.09 2.29 8.14 -2.38 -0.02 2.28 16 19 C -0.11 -2.99 5.05 30.59 0.15 -2.83 16 20 C 0.08 1.60 6.81 71.98 0.49 2.09 16 21 O -0.60 -12.60 13.66 -148.98 -2.03 -14.64 16 22 C 0.07 2.61 4.47 86.33 0.39 2.99 16 23 H 0.07 2.24 7.75 -2.39 -0.02 2.22 16 24 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 25 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.06 2.37 6.22 -2.39 -0.01 2.36 16 27 H 0.03 1.44 3.21 -2.39 -0.01 1.43 16 28 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 29 H 0.00 0.07 6.38 -2.39 -0.02 0.06 16 30 H 0.06 2.48 6.12 -2.39 -0.01 2.47 16 31 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.09 1.76 6.70 -2.38 -0.02 1.74 16 35 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.06 1.02 6.63 -2.39 -0.02 1.01 16 38 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.40 4.10 9.12 -74.06 -0.68 3.43 16 40 H 0.06 2.24 8.02 -2.39 -0.02 2.22 16 41 H 0.00 0.02 7.29 -2.38 -0.02 0.01 16 Total: -1.00 -68.99 302.42 -0.04 -69.03 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: 0.24 Total: 13.91 kcal Atomic # 6 Polarization: -35.07 SS G_CDS: 3.33 Total: -31.74 kcal Atomic # 7 Polarization: -80.75 SS G_CDS: -3.25 Total: -84.00 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: -2.03 Total: -14.64 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 1.67 Total: 47.44 kcal Total: -68.99 -0.04 -69.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051916374.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.481 kcal (2) G-P(sol) polarization free energy of solvation -68.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds