Wall clock time and date at job start Sun Mar 29 2020 23:01:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47140 * 2 1 4 4 H 1.09004 * 109.47221 * 302.41362 * 3 2 1 5 5 C 1.50701 * 109.47139 * 182.40819 * 3 2 1 6 6 H 1.07993 * 119.99961 * 240.00093 * 5 3 2 7 7 C 1.37879 * 119.99453 * 60.00465 * 5 3 2 8 8 N 1.31507 * 120.00283 * 359.97438 * 7 5 3 9 9 Si 1.86805 * 119.99555 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47386 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47142 * 119.99713 * 9 7 5 12 12 H 1.48502 * 109.47179 * 239.99757 * 9 7 5 13 13 N 1.46906 * 109.47042 * 62.40955 * 3 2 1 14 14 C 1.46850 * 110.99886 * 189.68807 * 13 3 2 15 15 C 1.53039 * 109.52026 * 174.16068 * 14 13 3 16 16 C 1.53117 * 109.27680 * 59.18369 * 15 14 13 17 17 C 1.53120 * 109.16069 * 302.34096 * 16 15 14 18 18 H 1.08999 * 109.53911 * 297.69749 * 17 16 15 19 19 C 1.53003 * 109.50399 * 177.59753 * 17 16 15 20 20 C 1.52995 * 109.47272 * 65.19734 * 19 17 16 21 21 O 1.42893 * 109.47231 * 179.97438 * 20 19 17 22 22 C 1.46849 * 110.99799 * 65.48337 * 13 3 2 23 23 H 1.09001 * 109.47263 * 174.65819 * 1 2 3 24 24 H 1.08995 * 109.47274 * 294.66276 * 1 2 3 25 25 H 1.09004 * 109.46932 * 54.66255 * 1 2 3 26 26 H 1.08996 * 109.46979 * 239.99754 * 2 1 3 27 27 H 1.08995 * 109.46762 * 119.99656 * 2 1 3 28 28 H 0.97000 * 120.00167 * 180.02562 * 8 7 5 29 29 H 1.08998 * 109.46335 * 294.17679 * 14 13 3 30 30 H 1.08996 * 109.45871 * 54.14641 * 14 13 3 31 31 H 1.09000 * 109.50118 * 179.11767 * 15 14 13 32 32 H 1.08995 * 109.50693 * 299.24261 * 15 14 13 33 33 H 1.09005 * 109.52480 * 182.43835 * 16 15 14 34 34 H 1.08998 * 109.57881 * 62.27999 * 16 15 14 35 35 H 1.09002 * 109.46695 * 185.19813 * 19 17 16 36 36 H 1.09000 * 109.47348 * 305.19420 * 19 17 16 37 37 H 1.09005 * 109.47361 * 300.00210 * 20 19 17 38 38 H 1.09006 * 109.46895 * 59.99906 * 20 19 17 39 39 H 0.96707 * 114.00362 * 179.97438 * 21 20 19 40 40 H 1.09003 * 109.45962 * 305.85233 * 22 13 3 41 41 H 1.08999 * 109.46528 * 65.81997 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6418 1.9687 -0.8676 5 6 3.5459 1.4429 -0.0597 6 1 4.1176 1.8993 0.7347 7 6 4.1935 0.8607 -1.1287 8 7 3.4972 0.3045 -2.0958 9 14 6.0600 0.8618 -1.2030 10 1 6.6029 1.5458 -0.0019 11 1 6.5547 -0.5378 -1.2421 12 1 6.5063 1.5788 -2.4245 13 7 1.5985 2.1180 1.2275 14 6 1.8689 3.5598 1.1612 15 6 1.2674 4.2499 2.3876 16 6 1.8840 3.6539 3.6561 17 6 1.6300 2.1441 3.6768 18 1 0.5570 1.9553 3.7097 19 6 2.2945 1.5311 4.9112 20 6 1.6180 2.0680 6.1741 21 8 2.2382 1.4951 7.3269 22 6 2.2210 1.5150 2.4130 23 1 -0.3634 -1.0232 -0.0957 24 1 -0.3633 0.4288 0.9339 25 1 -0.3633 0.5944 -0.8384 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.9528 -0.1054 -2.8476 29 1 2.9459 3.7268 1.1422 30 1 1.4216 3.9719 0.2567 31 1 1.4819 5.3178 2.3459 32 1 0.1886 4.0949 2.3999 33 1 1.4270 4.1122 4.5333 34 1 2.9574 3.8429 3.6641 35 1 2.1928 0.4464 4.8776 36 1 3.3516 1.7967 4.9244 37 1 1.7197 3.1527 6.2076 38 1 0.5609 1.8023 6.1609 39 1 1.8593 1.7917 8.1658 40 1 2.0293 0.4420 2.4177 41 1 3.2963 1.6916 2.3881 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051916375.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:01:20 Heat of formation + Delta-G solvation = -72.845183 kcal Electronic energy + Delta-G solvation = -18629.124106 eV Core-core repulsion = 15928.858476 eV Total energy + Delta-G solvation = -2700.265630 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.83340 -36.94974 -34.97606 -32.61659 -31.69635 -30.28922 -28.01094 -26.46196 -24.01879 -22.92038 -22.44637 -20.63101 -19.38079 -18.88199 -17.35016 -16.28196 -15.39307 -15.19056 -14.50894 -14.17842 -13.85762 -13.48636 -13.25785 -13.14254 -12.71081 -12.62284 -11.90778 -11.67941 -11.30995 -11.28541 -11.21663 -11.08149 -10.85245 -10.64396 -10.46766 -10.34321 -10.08862 -9.92572 -9.88221 -9.67564 -9.57376 -9.18970 -9.00798 -8.34670 -7.05644 -5.96655 -4.09809 3.26543 3.35337 3.38752 4.20808 4.41186 5.00648 5.05476 5.19854 5.27210 5.33845 5.41409 5.49607 5.56501 5.84789 6.01010 6.04720 6.09711 6.23880 6.30388 6.32022 6.36970 6.43745 6.49916 6.55175 6.64049 6.70035 6.79606 6.85120 6.98738 7.14994 7.22435 7.40382 7.58123 7.64761 7.79665 8.02951 8.20064 8.37808 8.52334 9.01115 9.57785 11.02382 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.021913 B = 0.006996 C = 0.006486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.468967 B = 4001.495566 C = 4315.703021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.111 4.111 3 C 0.214 3.786 4 H 0.037 0.963 5 C -0.541 4.541 6 H 0.057 0.943 7 C 0.068 3.932 8 N -0.886 5.886 9 Si 0.885 3.115 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.284 1.284 13 N -0.534 5.534 14 C 0.063 3.937 15 C -0.115 4.115 16 C -0.113 4.113 17 C -0.083 4.083 18 H 0.072 0.928 19 C -0.114 4.114 20 C 0.076 3.924 21 O -0.578 6.578 22 C 0.070 3.930 23 H 0.024 0.976 24 H 0.046 0.954 25 H 0.038 0.962 26 H 0.091 0.909 27 H 0.033 0.967 28 H 0.260 0.740 29 H 0.033 0.967 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.062 0.938 33 H 0.052 0.948 34 H 0.056 0.944 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.045 0.955 38 H 0.043 0.957 39 H 0.374 0.626 40 H 0.069 0.931 41 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.994 4.558 11.920 13.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.149 4.149 3 C 0.107 3.893 4 H 0.055 0.945 5 C -0.580 4.580 6 H 0.075 0.925 7 C -0.134 4.134 8 N -0.524 5.524 9 Si 0.713 3.287 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.211 1.211 13 N -0.258 5.258 14 C -0.066 4.066 15 C -0.153 4.153 16 C -0.151 4.151 17 C -0.102 4.102 18 H 0.090 0.910 19 C -0.152 4.152 20 C -0.002 4.002 21 O -0.383 6.383 22 C -0.058 4.058 23 H 0.043 0.957 24 H 0.065 0.935 25 H 0.058 0.942 26 H 0.109 0.891 27 H 0.051 0.949 28 H 0.070 0.930 29 H 0.051 0.949 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.064 0.936 38 H 0.061 0.939 39 H 0.220 0.780 40 H 0.087 0.913 41 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -5.121 4.106 11.295 13.063 hybrid contribution 1.650 0.365 0.168 1.698 sum -3.471 4.471 11.463 12.784 Atomic orbital electron populations 1.21687 0.98870 0.98253 1.00519 1.21593 0.92170 0.99208 1.01919 1.19278 0.92622 0.90994 0.86367 0.94498 1.21792 0.92786 1.37139 1.06295 0.92526 1.24906 0.97861 0.95102 0.95557 1.69883 1.34835 1.37783 1.09940 0.86651 0.86407 0.77732 0.77887 1.19980 1.20994 1.21057 1.62370 1.57804 1.01643 1.03939 1.21837 0.98398 0.89993 0.96375 1.21604 1.00475 0.98159 0.95102 1.21652 1.00514 0.95531 0.97376 1.21186 1.00305 0.94698 0.94006 0.90994 1.21530 1.00404 1.01143 0.92096 1.22305 0.95691 0.96456 0.85722 1.86501 1.63236 1.72111 1.16408 1.21875 0.96740 0.98531 0.88667 0.95708 0.93536 0.94249 0.89096 0.94875 0.92995 0.94855 0.92053 0.92762 0.91928 0.92976 0.92497 0.91287 0.91491 0.93634 0.93870 0.77980 0.91292 0.94445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 9.71 37.16 0.36 -2.41 16 2 C -0.11 -2.62 5.09 -26.73 -0.14 -2.76 16 3 C 0.21 5.24 1.73 -68.86 -0.12 5.12 16 4 H 0.04 1.01 7.99 -51.93 -0.42 0.59 16 5 C -0.54 -14.43 7.23 -34.44 -0.25 -14.68 16 6 H 0.06 1.53 5.84 -52.49 -0.31 1.23 16 7 C 0.07 1.85 5.30 -17.82 -0.09 1.76 16 8 N -0.89 -24.93 11.30 55.43 0.63 -24.30 16 9 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 N -0.53 -11.12 4.05 -228.07 -0.92 -12.04 16 14 C 0.06 1.20 5.18 -3.83 -0.02 1.18 16 15 C -0.12 -1.76 6.09 -26.65 -0.16 -1.92 16 16 C -0.11 -1.62 4.98 -26.61 -0.13 -1.76 16 17 C -0.08 -1.28 2.35 -90.54 -0.21 -1.49 16 18 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 19 C -0.11 -1.61 5.05 -26.73 -0.14 -1.75 16 20 C 0.08 0.89 6.81 37.15 0.25 1.15 16 21 O -0.58 -6.94 13.66 -35.23 -0.48 -7.42 16 22 C 0.07 1.36 4.07 -3.83 -0.02 1.35 16 23 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.05 0.91 7.83 -51.93 -0.41 0.50 16 25 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.09 2.41 6.01 -51.93 -0.31 2.10 16 27 H 0.03 0.78 6.31 -51.93 -0.33 0.45 16 28 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 29 H 0.03 0.70 7.27 -51.93 -0.38 0.32 16 30 H 0.06 1.19 8.02 -51.93 -0.42 0.78 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.05 0.63 6.70 -51.93 -0.35 0.29 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.05 0.49 6.63 -51.93 -0.34 0.15 16 38 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.37 2.58 9.12 45.56 0.42 3.00 16 40 H 0.07 1.40 6.15 -51.93 -0.32 1.08 16 41 H 0.04 0.81 6.39 -51.93 -0.33 0.48 16 LS Contribution 309.32 15.07 4.66 4.66 Total: -1.00 -28.66 309.32 -8.23 -36.89 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -6.43 Total: 2.19 kcal Atomic # 6 Polarization: -15.55 SS G_CDS: -0.66 Total: -16.21 kcal Atomic # 7 Polarization: -36.04 SS G_CDS: -0.30 Total: -36.34 kcal Atomic # 8 Polarization: -6.94 SS G_CDS: -0.48 Total: -7.42 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -28.66 -8.23 -36.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051916375.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.954 kcal (2) G-P(sol) polarization free energy of solvation -28.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds