Wall clock time and date at job start Sun Mar 29 2020 23:01:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47140 * 2 1 4 4 H 1.09004 * 109.47221 * 302.41362 * 3 2 1 5 5 C 1.50701 * 109.47139 * 182.40819 * 3 2 1 6 6 H 1.07993 * 119.99961 * 240.00093 * 5 3 2 7 7 C 1.37879 * 119.99453 * 60.00465 * 5 3 2 8 8 N 1.31507 * 120.00283 * 359.97438 * 7 5 3 9 9 Si 1.86805 * 119.99555 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47386 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47142 * 119.99713 * 9 7 5 12 12 H 1.48502 * 109.47179 * 239.99757 * 9 7 5 13 13 N 1.46906 * 109.47042 * 62.40955 * 3 2 1 14 14 C 1.46850 * 110.99886 * 189.68807 * 13 3 2 15 15 C 1.53039 * 109.52026 * 174.16068 * 14 13 3 16 16 C 1.53117 * 109.27680 * 59.18369 * 15 14 13 17 17 C 1.53120 * 109.16069 * 302.34096 * 16 15 14 18 18 H 1.08999 * 109.53911 * 297.69749 * 17 16 15 19 19 C 1.53003 * 109.50399 * 177.59753 * 17 16 15 20 20 C 1.52995 * 109.47272 * 65.19734 * 19 17 16 21 21 O 1.42893 * 109.47231 * 179.97438 * 20 19 17 22 22 C 1.46849 * 110.99799 * 65.48337 * 13 3 2 23 23 H 1.09001 * 109.47263 * 174.65819 * 1 2 3 24 24 H 1.08995 * 109.47274 * 294.66276 * 1 2 3 25 25 H 1.09004 * 109.46932 * 54.66255 * 1 2 3 26 26 H 1.08996 * 109.46979 * 239.99754 * 2 1 3 27 27 H 1.08995 * 109.46762 * 119.99656 * 2 1 3 28 28 H 0.97000 * 120.00167 * 180.02562 * 8 7 5 29 29 H 1.08998 * 109.46335 * 294.17679 * 14 13 3 30 30 H 1.08996 * 109.45871 * 54.14641 * 14 13 3 31 31 H 1.09000 * 109.50118 * 179.11767 * 15 14 13 32 32 H 1.08995 * 109.50693 * 299.24261 * 15 14 13 33 33 H 1.09005 * 109.52480 * 182.43835 * 16 15 14 34 34 H 1.08998 * 109.57881 * 62.27999 * 16 15 14 35 35 H 1.09002 * 109.46695 * 185.19813 * 19 17 16 36 36 H 1.09000 * 109.47348 * 305.19420 * 19 17 16 37 37 H 1.09005 * 109.47361 * 300.00210 * 20 19 17 38 38 H 1.09006 * 109.46895 * 59.99906 * 20 19 17 39 39 H 0.96707 * 114.00362 * 179.97438 * 21 20 19 40 40 H 1.09003 * 109.45962 * 305.85233 * 22 13 3 41 41 H 1.08999 * 109.46528 * 65.81997 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6418 1.9687 -0.8676 5 6 3.5459 1.4429 -0.0597 6 1 4.1176 1.8993 0.7347 7 6 4.1935 0.8607 -1.1287 8 7 3.4972 0.3045 -2.0958 9 14 6.0600 0.8618 -1.2030 10 1 6.6029 1.5458 -0.0019 11 1 6.5547 -0.5378 -1.2421 12 1 6.5063 1.5788 -2.4245 13 7 1.5985 2.1180 1.2275 14 6 1.8689 3.5598 1.1612 15 6 1.2674 4.2499 2.3876 16 6 1.8840 3.6539 3.6561 17 6 1.6300 2.1441 3.6768 18 1 0.5570 1.9553 3.7097 19 6 2.2945 1.5311 4.9112 20 6 1.6180 2.0680 6.1741 21 8 2.2382 1.4951 7.3269 22 6 2.2210 1.5150 2.4130 23 1 -0.3634 -1.0232 -0.0957 24 1 -0.3633 0.4288 0.9339 25 1 -0.3633 0.5944 -0.8384 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.9528 -0.1054 -2.8476 29 1 2.9459 3.7268 1.1422 30 1 1.4216 3.9719 0.2567 31 1 1.4819 5.3178 2.3459 32 1 0.1886 4.0949 2.3999 33 1 1.4270 4.1122 4.5333 34 1 2.9574 3.8429 3.6641 35 1 2.1928 0.4464 4.8776 36 1 3.3516 1.7967 4.9244 37 1 1.7197 3.1527 6.2076 38 1 0.5609 1.8023 6.1609 39 1 1.8593 1.7917 8.1658 40 1 2.0293 0.4420 2.4177 41 1 3.2963 1.6916 2.3881 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051916375.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:01:20 Heat of formation + Delta-G solvation = -92.320035 kcal Electronic energy + Delta-G solvation = -18629.968599 eV Core-core repulsion = 15928.858476 eV Total energy + Delta-G solvation = -2701.110123 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.31630 -38.01824 -36.52736 -34.23016 -33.46273 -31.86581 -29.31314 -28.33779 -25.68572 -24.29316 -24.01705 -21.97972 -20.91527 -20.58340 -18.34059 -18.21113 -17.05695 -16.37848 -16.14546 -15.69025 -15.19237 -15.04375 -14.70842 -14.64769 -14.30268 -14.05795 -13.50756 -13.23413 -13.07662 -12.89706 -12.69300 -12.61580 -12.42443 -12.28877 -12.09438 -11.84387 -11.56855 -11.54605 -11.42256 -11.18402 -10.95480 -10.88339 -10.61342 -10.44043 -8.89145 -8.03810 -6.26609 1.32656 1.35846 1.45209 2.37861 3.13462 3.21129 3.64218 3.86697 4.02839 4.13743 4.30043 4.38158 4.53601 4.55840 4.60509 4.72411 4.74514 4.78170 4.79885 4.91320 4.98015 5.04783 5.08042 5.11332 5.15220 5.23727 5.29620 5.38178 5.42019 5.46371 5.52006 5.60045 5.66814 5.80195 6.08007 6.22010 6.41039 6.73162 6.95896 6.97363 7.44177 8.90626 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.021913 B = 0.006996 C = 0.006486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.468967 B = 4001.495566 C = 4315.703021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.105 4.105 3 C 0.218 3.782 4 H 0.003 0.997 5 C -0.549 4.549 6 H 0.046 0.954 7 C 0.022 3.978 8 N -0.910 5.910 9 Si 0.943 3.057 10 H -0.275 1.275 11 H -0.279 1.279 12 H -0.279 1.279 13 N -0.528 5.528 14 C 0.060 3.940 15 C -0.106 4.106 16 C -0.110 4.110 17 C -0.071 4.071 18 H 0.082 0.918 19 C -0.112 4.112 20 C 0.081 3.919 21 O -0.599 6.599 22 C 0.074 3.926 23 H 0.044 0.956 24 H 0.057 0.943 25 H 0.033 0.967 26 H 0.060 0.940 27 H 0.029 0.971 28 H 0.261 0.739 29 H 0.008 0.992 30 H 0.052 0.948 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.046 0.954 35 H 0.057 0.943 36 H 0.052 0.948 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.397 0.603 40 H 0.054 0.946 41 H 0.008 0.992 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.841 5.466 13.953 16.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.144 4.144 3 C 0.111 3.889 4 H 0.021 0.979 5 C -0.589 4.589 6 H 0.064 0.936 7 C -0.178 4.178 8 N -0.550 5.550 9 Si 0.770 3.230 10 H -0.200 1.200 11 H -0.205 1.205 12 H -0.205 1.205 13 N -0.251 5.251 14 C -0.069 4.069 15 C -0.143 4.143 16 C -0.147 4.147 17 C -0.090 4.090 18 H 0.101 0.899 19 C -0.150 4.150 20 C 0.004 3.996 21 O -0.408 6.408 22 C -0.054 4.054 23 H 0.063 0.937 24 H 0.076 0.924 25 H 0.052 0.948 26 H 0.079 0.921 27 H 0.047 0.953 28 H 0.071 0.929 29 H 0.026 0.974 30 H 0.070 0.930 31 H 0.096 0.904 32 H 0.092 0.908 33 H 0.107 0.893 34 H 0.065 0.935 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.247 0.753 40 H 0.073 0.927 41 H 0.026 0.974 Dipole moment (debyes) X Y Z Total from point charges -5.977 5.026 13.356 15.472 hybrid contribution 1.923 0.081 -0.461 1.979 sum -4.054 5.107 12.895 14.450 Atomic orbital electron populations 1.21540 0.96048 0.99563 1.00871 1.21429 0.94645 0.98154 1.00136 1.19061 0.91362 0.91480 0.86999 0.97912 1.22002 0.94155 1.36751 1.05943 0.93595 1.25589 1.01798 0.95016 0.95411 1.70000 1.36250 1.38377 1.10351 0.85737 0.81724 0.77775 0.77781 1.19993 1.20514 1.20520 1.62354 1.57314 1.02482 1.02970 1.21934 0.97155 0.89252 0.98567 1.21553 1.00719 0.98982 0.93088 1.21656 1.00201 0.94532 0.98328 1.21057 1.00479 0.95397 0.92075 0.89923 1.21456 0.99801 1.00495 0.93255 1.22204 0.95896 0.97093 0.84399 1.86438 1.63994 1.72650 1.17690 1.21866 0.95244 0.98134 0.90154 0.93730 0.92362 0.94756 0.92126 0.95275 0.92929 0.97408 0.92975 0.90429 0.90803 0.89330 0.93535 0.92451 0.92936 0.91964 0.92288 0.75334 0.92728 0.97371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.95 9.71 71.98 0.70 -4.25 16 2 C -0.11 -5.11 5.09 30.59 0.16 -4.95 16 3 C 0.22 11.07 1.73 44.17 0.08 11.15 16 4 H 0.00 0.17 7.99 -2.38 -0.02 0.15 16 5 C -0.55 -30.37 7.23 25.60 0.18 -30.18 16 6 H 0.05 2.59 5.84 -2.91 -0.02 2.57 16 7 C 0.02 1.21 5.30 84.66 0.45 1.66 16 8 N -0.91 -52.66 11.30 21.45 0.24 -52.42 16 9 Si 0.94 44.52 29.54 68.60 2.03 46.55 16 10 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 11 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 12 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 13 N -0.53 -22.24 4.05 -875.47 -3.54 -25.78 16 14 C 0.06 2.29 5.18 86.33 0.45 2.74 16 15 C -0.11 -2.95 6.09 30.65 0.19 -2.76 16 16 C -0.11 -2.83 4.98 30.67 0.15 -2.68 16 17 C -0.07 -2.06 2.35 -10.74 -0.03 -2.09 16 18 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 19 C -0.11 -3.00 5.05 30.59 0.15 -2.85 16 20 C 0.08 1.64 6.81 71.98 0.49 2.13 16 21 O -0.60 -12.71 13.66 -148.98 -2.03 -14.75 16 22 C 0.07 2.92 4.07 86.33 0.35 3.27 16 23 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 24 H 0.06 2.19 7.83 -2.39 -0.02 2.17 16 25 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.06 3.32 6.01 -2.39 -0.01 3.31 16 27 H 0.03 1.40 6.31 -2.39 -0.02 1.38 16 28 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 29 H 0.01 0.33 7.27 -2.39 -0.02 0.31 16 30 H 0.05 2.06 8.02 -2.39 -0.02 2.04 16 31 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.07 1.94 8.14 -2.39 -0.02 1.93 16 33 H 0.09 1.72 6.70 -2.38 -0.02 1.70 16 34 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.06 1.06 6.63 -2.38 -0.02 1.04 16 38 H 0.06 1.02 8.14 -2.38 -0.02 1.01 16 39 H 0.40 4.19 9.12 -74.05 -0.68 3.51 16 40 H 0.05 2.26 6.15 -2.39 -0.01 2.25 16 41 H 0.01 0.36 6.39 -2.39 -0.02 0.35 16 Total: -1.00 -63.32 309.32 0.33 -62.99 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: 0.32 Total: 12.23 kcal Atomic # 6 Polarization: -32.13 SS G_CDS: 3.32 Total: -28.81 kcal Atomic # 7 Polarization: -74.90 SS G_CDS: -3.30 Total: -78.20 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: -2.03 Total: -14.75 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -63.32 0.33 -62.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051916375.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.334 kcal (2) G-P(sol) polarization free energy of solvation -63.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds