Wall clock time and date at job start Sun Mar 29 2020 23:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46905 * 2 1 4 4 H 1.09005 * 109.47186 * 55.01124 * 3 2 1 5 5 C 1.50700 * 109.47083 * 175.00701 * 3 2 1 6 6 H 1.08001 * 119.99935 * 119.99980 * 5 3 2 7 7 C 1.37884 * 120.00370 * 300.27934 * 5 3 2 8 8 N 1.31523 * 119.99472 * 359.72082 * 7 5 3 9 9 Si 1.86791 * 120.00439 * 179.72452 * 7 5 3 10 10 H 1.48502 * 109.46921 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47568 * 119.99815 * 9 7 5 12 12 H 1.48499 * 109.47148 * 239.99874 * 9 7 5 13 13 N 1.46895 * 109.47503 * 295.00477 * 3 2 1 14 14 C 1.46900 * 110.99867 * 155.80708 * 13 3 2 15 15 H 1.08999 * 109.54233 * 34.44414 * 14 13 3 16 16 C 1.53181 * 109.54609 * 274.26157 * 14 13 3 17 17 C 1.53108 * 109.15530 * 183.24406 * 16 14 13 18 18 O 1.42898 * 109.48973 * 57.47368 * 17 16 14 19 19 C 1.42906 * 114.10071 * 298.89003 * 18 17 16 20 20 C 1.53001 * 109.47607 * 301.17483 * 19 18 17 21 21 C 1.53001 * 109.48309 * 181.13827 * 19 18 17 22 22 C 1.53096 * 109.41529 * 61.15171 * 19 18 17 23 23 H 1.08998 * 109.46823 * 175.59950 * 1 2 3 24 24 H 1.08994 * 109.47433 * 295.59601 * 1 2 3 25 25 H 1.08994 * 109.47101 * 55.60265 * 1 2 3 26 26 H 1.08998 * 109.47501 * 239.99974 * 2 1 3 27 27 H 1.09000 * 109.47239 * 119.99829 * 2 1 3 28 28 H 0.96997 * 119.99768 * 179.97438 * 8 7 5 29 29 H 1.00897 * 111.00325 * 279.76664 * 13 3 2 30 30 H 1.08999 * 109.52028 * 303.05488 * 16 14 13 31 31 H 1.08999 * 109.52225 * 63.24917 * 16 14 13 32 32 H 1.09005 * 109.40435 * 297.49130 * 17 16 14 33 33 H 1.09000 * 109.48950 * 177.51122 * 17 16 14 34 34 H 1.09001 * 109.46713 * 179.97438 * 20 19 18 35 35 H 1.08991 * 109.47245 * 299.93799 * 20 19 18 36 36 H 1.09002 * 109.47168 * 59.94183 * 20 19 18 37 37 H 1.08998 * 109.47186 * 300.05570 * 21 19 18 38 38 H 1.08999 * 109.47061 * 60.05855 * 21 19 18 39 39 H 1.08994 * 109.46778 * 180.02562 * 21 19 18 40 40 H 1.08994 * 109.52395 * 182.48266 * 22 19 18 41 41 H 1.09007 * 109.56643 * 62.33138 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 0.8420 5 6 3.5418 1.4443 0.1237 6 1 4.1470 1.8890 -0.6525 7 6 4.1437 0.8733 1.2250 8 7 3.4067 0.3318 2.1702 9 14 6.0056 0.8687 1.3745 10 1 6.5992 1.5346 0.1873 11 1 6.4053 1.5995 2.6039 12 1 6.4926 -0.5320 1.4510 13 7 1.6512 2.0993 -1.2551 14 6 1.5910 3.5577 -1.0893 15 1 2.3621 3.8771 -0.3883 16 6 0.2130 3.9560 -0.5519 17 6 0.1317 5.4821 -0.4592 18 8 0.3813 6.0518 -1.7457 19 6 1.6741 5.7521 -2.2758 20 6 2.7501 6.2625 -1.3153 21 6 1.8386 6.4338 -3.6357 22 6 1.8167 4.2371 -2.4436 23 1 -0.3633 -1.0246 -0.0789 24 1 -0.3634 0.4439 0.9267 25 1 -0.3633 0.5805 -0.8479 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.8300 -0.0702 2.9448 29 1 2.2773 1.8461 -2.0048 30 1 -0.5607 3.5917 -1.2277 31 1 0.0682 3.5214 0.4372 32 1 0.8782 5.8422 0.2488 33 1 -0.8621 5.7733 -0.1192 34 1 3.7362 6.0335 -1.7196 35 1 2.6486 7.3411 -1.1960 36 1 2.6323 5.7770 -0.3465 37 1 1.0716 6.0703 -4.3195 38 1 1.7372 7.5124 -3.5160 39 1 2.8245 6.2047 -4.0399 40 1 2.8176 4.0033 -2.8062 41 1 1.0769 3.8778 -3.1591 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069891007.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:27 Heat of formation + Delta-G solvation = -68.785160 kcal Electronic energy + Delta-G solvation = -18817.434516 eV Core-core repulsion = 16117.344942 eV Total energy + Delta-G solvation = -2700.089574 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.72479 -36.23929 -33.50176 -33.17031 -31.50177 -29.71226 -27.64820 -27.15242 -25.79849 -23.31019 -22.72466 -20.73334 -19.42172 -18.75303 -16.63205 -15.89995 -15.65708 -14.98565 -14.53421 -14.36432 -13.99693 -13.44854 -12.90368 -12.87327 -12.76164 -12.29834 -12.03388 -11.93791 -11.65000 -11.36961 -11.36556 -11.19627 -11.16472 -10.82175 -10.78073 -10.65919 -10.27226 -10.02954 -9.85614 -9.57570 -9.46901 -9.14551 -8.94970 -8.38810 -7.25326 -6.01475 -4.14645 3.23136 3.32039 3.34655 3.98554 4.36990 4.91013 5.02021 5.12281 5.22975 5.24409 5.45299 5.61130 5.68818 5.72659 5.75868 5.78766 5.90119 5.94808 6.14820 6.16944 6.27875 6.31881 6.37569 6.42087 6.52439 6.53357 6.63995 6.72986 6.91220 7.12987 7.18827 7.45598 7.54071 7.59767 7.76839 8.09080 8.15980 8.34098 8.67096 8.99227 9.53130 10.98266 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.022816 B = 0.007676 C = 0.006428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.919155 B = 3646.844514 C = 4354.682475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.107 4.107 3 C 0.215 3.785 4 H 0.032 0.968 5 C -0.544 4.544 6 H 0.053 0.947 7 C 0.067 3.933 8 N -0.884 5.884 9 Si 0.887 3.113 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.283 1.283 13 N -0.685 5.685 14 C 0.092 3.908 15 H 0.050 0.950 16 C -0.139 4.139 17 C 0.059 3.941 18 O -0.379 6.379 19 C 0.114 3.886 20 C -0.180 4.180 21 C -0.135 4.135 22 C -0.141 4.141 23 H 0.024 0.976 24 H 0.035 0.965 25 H 0.050 0.950 26 H 0.029 0.971 27 H 0.090 0.910 28 H 0.260 0.740 29 H 0.327 0.673 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.049 0.951 33 H 0.087 0.913 34 H 0.064 0.936 35 H 0.057 0.943 36 H 0.068 0.932 37 H 0.061 0.939 38 H 0.059 0.941 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.602 8.914 -6.634 11.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.145 4.145 3 C 0.107 3.893 4 H 0.050 0.950 5 C -0.583 4.583 6 H 0.071 0.929 7 C -0.135 4.135 8 N -0.523 5.523 9 Si 0.715 3.285 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.209 1.209 13 N -0.314 5.314 14 C -0.018 4.018 15 H 0.068 0.932 16 C -0.178 4.178 17 C -0.018 4.018 18 O -0.299 6.299 19 C 0.074 3.926 20 C -0.237 4.237 21 C -0.192 4.192 22 C -0.179 4.179 23 H 0.043 0.957 24 H 0.054 0.946 25 H 0.069 0.931 26 H 0.048 0.952 27 H 0.108 0.892 28 H 0.071 0.929 29 H 0.144 0.856 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.067 0.933 33 H 0.105 0.895 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.395 8.829 -6.444 11.780 hybrid contribution 2.276 -0.119 0.490 2.332 sum -2.118 8.710 -5.954 10.761 Atomic orbital electron populations 1.21710 0.99025 0.98441 1.00355 1.21493 0.92112 0.99313 1.01593 1.19161 0.92632 0.91177 0.86306 0.94991 1.21915 0.92837 1.37933 1.05616 0.92926 1.24936 0.97844 0.95031 0.95734 1.69890 1.34675 1.38192 1.09532 0.86628 0.86197 0.77779 0.77920 1.19952 1.21060 1.20933 1.60910 1.56007 1.04851 1.09627 1.21357 0.95661 0.90081 0.94742 0.93163 1.22181 0.98738 0.94584 1.02274 1.22603 1.00736 0.93464 0.84964 1.87881 1.33431 1.74264 1.34282 1.21425 0.83424 0.94085 0.93620 1.22458 0.99143 1.01203 1.00926 1.21735 1.01943 1.00560 0.94984 1.22361 1.02101 0.94424 0.98999 0.95721 0.94621 0.93097 0.95214 0.89220 0.92946 0.85601 0.91237 0.91112 0.93260 0.89454 0.91672 0.92392 0.91335 0.91992 0.92228 0.91363 0.91531 0.90967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 9.85 37.16 0.37 -2.49 16 2 C -0.11 -2.55 5.45 -26.73 -0.15 -2.69 16 3 C 0.22 5.23 1.80 -68.87 -0.12 5.10 16 4 H 0.03 0.86 7.21 -51.93 -0.37 0.49 16 5 C -0.54 -14.44 8.23 -34.44 -0.28 -14.72 16 6 H 0.05 1.40 7.75 -52.49 -0.41 0.99 16 7 C 0.07 1.81 5.29 -17.81 -0.09 1.72 16 8 N -0.88 -24.80 11.29 55.43 0.63 -24.18 16 9 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 10 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 N -0.68 -14.12 5.44 -100.76 -0.55 -14.67 16 14 C 0.09 1.69 2.07 -67.53 -0.14 1.55 16 15 H 0.05 1.05 6.09 -51.93 -0.32 0.73 16 16 C -0.14 -2.37 5.63 -26.58 -0.15 -2.52 16 17 C 0.06 0.88 6.51 37.21 0.24 1.12 16 18 O -0.38 -5.87 10.24 -35.23 -0.36 -6.23 16 19 C 0.11 1.63 1.11 -90.57 -0.10 1.53 16 20 C -0.18 -2.48 7.93 37.16 0.29 -2.19 16 21 C -0.13 -1.59 8.85 37.16 0.33 -1.26 16 22 C -0.14 -2.20 4.19 -26.59 -0.11 -2.31 16 23 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 24 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.05 1.02 7.63 -51.93 -0.40 0.62 16 26 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.09 2.39 5.94 -51.93 -0.31 2.09 16 28 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 29 H 0.33 6.73 8.07 -39.29 -0.32 6.41 16 30 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 31 H 0.07 1.29 7.52 -51.93 -0.39 0.90 16 32 H 0.05 0.72 6.34 -51.93 -0.33 0.39 16 33 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.07 1.05 4.98 -51.93 -0.26 0.79 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.07 1.14 8.14 -51.92 -0.42 0.71 16 LS Contribution 312.26 15.07 4.71 4.71 Total: -1.00 -27.41 312.26 -7.82 -35.23 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -7.31 Total: 6.35 kcal Atomic # 6 Polarization: -17.24 SS G_CDS: 0.08 Total: -17.15 kcal Atomic # 7 Polarization: -38.92 SS G_CDS: 0.08 Total: -38.85 kcal Atomic # 8 Polarization: -5.87 SS G_CDS: -0.36 Total: -6.23 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -27.41 -7.82 -35.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069891007.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.558 kcal (2) G-P(sol) polarization free energy of solvation -27.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds