Wall clock time and date at job start Sun Mar 29 2020 23:05:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46905 * 2 1 4 4 H 1.09005 * 109.47186 * 55.01124 * 3 2 1 5 5 C 1.50700 * 109.47083 * 175.00701 * 3 2 1 6 6 H 1.08001 * 119.99935 * 119.99980 * 5 3 2 7 7 C 1.37884 * 120.00370 * 300.27934 * 5 3 2 8 8 N 1.31523 * 119.99472 * 359.72082 * 7 5 3 9 9 Si 1.86791 * 120.00439 * 179.72452 * 7 5 3 10 10 H 1.48502 * 109.46921 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47568 * 119.99815 * 9 7 5 12 12 H 1.48499 * 109.47148 * 239.99874 * 9 7 5 13 13 N 1.46895 * 109.47503 * 295.00477 * 3 2 1 14 14 C 1.46900 * 110.99867 * 155.80708 * 13 3 2 15 15 H 1.08999 * 109.54233 * 34.44414 * 14 13 3 16 16 C 1.53181 * 109.54609 * 274.26157 * 14 13 3 17 17 C 1.53108 * 109.15530 * 183.24406 * 16 14 13 18 18 O 1.42898 * 109.48973 * 57.47368 * 17 16 14 19 19 C 1.42906 * 114.10071 * 298.89003 * 18 17 16 20 20 C 1.53001 * 109.47607 * 301.17483 * 19 18 17 21 21 C 1.53001 * 109.48309 * 181.13827 * 19 18 17 22 22 C 1.53096 * 109.41529 * 61.15171 * 19 18 17 23 23 H 1.08998 * 109.46823 * 175.59950 * 1 2 3 24 24 H 1.08994 * 109.47433 * 295.59601 * 1 2 3 25 25 H 1.08994 * 109.47101 * 55.60265 * 1 2 3 26 26 H 1.08998 * 109.47501 * 239.99974 * 2 1 3 27 27 H 1.09000 * 109.47239 * 119.99829 * 2 1 3 28 28 H 0.96997 * 119.99768 * 179.97438 * 8 7 5 29 29 H 1.00897 * 111.00325 * 279.76664 * 13 3 2 30 30 H 1.08999 * 109.52028 * 303.05488 * 16 14 13 31 31 H 1.08999 * 109.52225 * 63.24917 * 16 14 13 32 32 H 1.09005 * 109.40435 * 297.49130 * 17 16 14 33 33 H 1.09000 * 109.48950 * 177.51122 * 17 16 14 34 34 H 1.09001 * 109.46713 * 179.97438 * 20 19 18 35 35 H 1.08991 * 109.47245 * 299.93799 * 20 19 18 36 36 H 1.09002 * 109.47168 * 59.94183 * 20 19 18 37 37 H 1.08998 * 109.47186 * 300.05570 * 21 19 18 38 38 H 1.08999 * 109.47061 * 60.05855 * 21 19 18 39 39 H 1.08994 * 109.46778 * 180.02562 * 21 19 18 40 40 H 1.08994 * 109.52395 * 182.48266 * 22 19 18 41 41 H 1.09007 * 109.56643 * 62.33138 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 0.8420 5 6 3.5418 1.4443 0.1237 6 1 4.1470 1.8890 -0.6525 7 6 4.1437 0.8733 1.2250 8 7 3.4067 0.3318 2.1702 9 14 6.0056 0.8687 1.3745 10 1 6.5992 1.5346 0.1873 11 1 6.4053 1.5995 2.6039 12 1 6.4926 -0.5320 1.4510 13 7 1.6512 2.0993 -1.2551 14 6 1.5910 3.5577 -1.0893 15 1 2.3621 3.8771 -0.3883 16 6 0.2130 3.9560 -0.5519 17 6 0.1317 5.4821 -0.4592 18 8 0.3813 6.0518 -1.7457 19 6 1.6741 5.7521 -2.2758 20 6 2.7501 6.2625 -1.3153 21 6 1.8386 6.4338 -3.6357 22 6 1.8167 4.2371 -2.4436 23 1 -0.3633 -1.0246 -0.0789 24 1 -0.3634 0.4439 0.9267 25 1 -0.3633 0.5805 -0.8479 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.8300 -0.0702 2.9448 29 1 2.2773 1.8461 -2.0048 30 1 -0.5607 3.5917 -1.2277 31 1 0.0682 3.5214 0.4372 32 1 0.8782 5.8422 0.2488 33 1 -0.8621 5.7733 -0.1192 34 1 3.7362 6.0335 -1.7196 35 1 2.6486 7.3411 -1.1960 36 1 2.6323 5.7770 -0.3465 37 1 1.0716 6.0703 -4.3195 38 1 1.7372 7.5124 -3.5160 39 1 2.8245 6.2047 -4.0399 40 1 2.8176 4.0033 -2.8062 41 1 1.0769 3.8778 -3.1591 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069891007.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:26 Heat of formation + Delta-G solvation = -85.264798 kcal Electronic energy + Delta-G solvation = -18818.149127 eV Core-core repulsion = 16117.344942 eV Total energy + Delta-G solvation = -2700.804185 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.98734 -37.96954 -35.08757 -34.46256 -33.40882 -31.28993 -29.06830 -28.20066 -27.60160 -24.82398 -24.39699 -22.12722 -21.29190 -20.04282 -18.65805 -17.15678 -16.96702 -16.75116 -16.13932 -15.65937 -15.47143 -15.10612 -14.71197 -14.30721 -14.03390 -13.61132 -13.35947 -13.24394 -13.10132 -13.02270 -12.92653 -12.71650 -12.62366 -12.56106 -12.28514 -12.03996 -11.99182 -11.57184 -11.52403 -11.38528 -11.14813 -10.76458 -10.46565 -10.37109 -9.04964 -8.06502 -6.28830 1.34616 1.37744 1.47138 2.38077 2.84747 3.12789 3.53175 3.81196 3.92340 4.01061 4.18179 4.33964 4.39095 4.54057 4.57930 4.60722 4.69359 4.76764 4.80167 4.84427 4.90009 4.94149 4.95604 5.09185 5.12466 5.16066 5.18985 5.25310 5.38405 5.41977 5.46675 5.54579 5.64691 5.78093 6.10883 6.20778 6.35729 6.40674 6.83598 7.02265 7.42823 8.89832 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.022816 B = 0.007676 C = 0.006428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.919155 B = 3646.844514 C = 4354.682475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.104 4.104 3 C 0.225 3.775 4 H -0.001 1.001 5 C -0.556 4.556 6 H 0.049 0.951 7 C 0.020 3.980 8 N -0.911 5.911 9 Si 0.948 3.052 10 H -0.269 1.269 11 H -0.282 1.282 12 H -0.280 1.280 13 N -0.677 5.677 14 C 0.091 3.909 15 H 0.023 0.977 16 C -0.134 4.134 17 C 0.064 3.936 18 O -0.384 6.384 19 C 0.110 3.890 20 C -0.178 4.178 21 C -0.131 4.131 22 C -0.133 4.133 23 H 0.044 0.956 24 H 0.029 0.971 25 H 0.058 0.942 26 H 0.027 0.973 27 H 0.060 0.940 28 H 0.261 0.739 29 H 0.328 0.672 30 H 0.069 0.931 31 H 0.051 0.949 32 H 0.048 0.952 33 H 0.110 0.890 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.046 0.954 37 H 0.064 0.936 38 H 0.069 0.931 39 H 0.082 0.918 40 H 0.069 0.931 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.457 9.929 -7.932 13.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.142 4.142 3 C 0.116 3.884 4 H 0.017 0.983 5 C -0.595 4.595 6 H 0.067 0.933 7 C -0.180 4.180 8 N -0.550 5.550 9 Si 0.774 3.226 10 H -0.194 1.194 11 H -0.208 1.208 12 H -0.206 1.206 13 N -0.306 5.306 14 C -0.019 4.019 15 H 0.041 0.959 16 C -0.172 4.172 17 C -0.013 4.013 18 O -0.303 6.303 19 C 0.071 3.929 20 C -0.235 4.235 21 C -0.188 4.188 22 C -0.171 4.171 23 H 0.063 0.937 24 H 0.048 0.952 25 H 0.077 0.923 26 H 0.046 0.954 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.145 0.855 30 H 0.088 0.912 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.128 0.872 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.065 0.935 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.101 0.899 40 H 0.088 0.912 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.255 9.854 -7.756 13.243 hybrid contribution 2.219 -0.431 0.898 2.433 sum -2.035 9.423 -6.858 11.831 Atomic orbital electron populations 1.21562 0.96479 0.99866 1.00343 1.21367 0.94379 0.98553 0.99942 1.18895 0.91393 0.91342 0.86738 0.98270 1.22201 0.94111 1.37662 1.05564 0.93301 1.25659 1.01979 0.94852 0.95549 1.70016 1.36270 1.38808 1.09943 0.85664 0.81240 0.77782 0.77896 1.19383 1.20844 1.20563 1.60867 1.55435 1.06314 1.07957 1.21399 0.95707 0.88727 0.96058 0.95943 1.22109 0.97699 0.96417 1.00989 1.22606 1.02087 0.91561 0.85068 1.87888 1.34095 1.74082 1.34280 1.21589 0.83092 0.93103 0.95129 1.22437 0.99397 1.01937 0.99746 1.21736 1.02948 1.00923 0.93191 1.22302 1.02343 0.95502 0.96943 0.93663 0.95211 0.92318 0.95417 0.92162 0.92929 0.85486 0.91218 0.93023 0.93339 0.87177 0.91054 0.90884 0.93458 0.91702 0.91159 0.89889 0.91187 0.90701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.12 9.85 71.98 0.71 -4.41 16 2 C -0.10 -5.02 5.45 30.59 0.17 -4.85 16 3 C 0.23 11.19 1.80 44.17 0.08 11.27 16 4 H 0.00 -0.04 7.21 -2.38 -0.02 -0.05 16 5 C -0.56 -29.99 8.23 25.60 0.21 -29.78 16 6 H 0.05 2.61 7.75 -2.91 -0.02 2.59 16 7 C 0.02 1.07 5.29 84.65 0.45 1.52 16 8 N -0.91 -52.12 11.29 21.45 0.24 -51.88 16 9 Si 0.95 43.26 29.54 68.60 2.03 45.29 16 10 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 11 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 12 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 13 N -0.68 -28.07 5.44 -472.70 -2.57 -30.64 16 14 C 0.09 3.37 2.07 45.04 0.09 3.47 16 15 H 0.02 0.97 6.09 -2.39 -0.01 0.95 16 16 C -0.13 -4.53 5.63 30.69 0.17 -4.36 16 17 C 0.06 1.82 6.51 72.02 0.47 2.29 16 18 O -0.38 -11.12 10.24 -148.98 -1.53 -12.64 16 19 C 0.11 2.93 1.11 -10.76 -0.01 2.92 16 20 C -0.18 -4.65 7.93 71.98 0.57 -4.08 16 21 C -0.13 -2.69 8.85 71.98 0.64 -2.05 16 22 C -0.13 -3.99 4.19 30.69 0.13 -3.86 16 23 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 24 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.06 2.29 7.63 -2.39 -0.02 2.27 16 26 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.06 3.29 5.94 -2.39 -0.01 3.28 16 28 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 29 H 0.33 13.44 8.07 -89.70 -0.72 12.72 16 30 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 31 H 0.05 1.93 7.52 -2.39 -0.02 1.91 16 32 H 0.05 1.40 6.34 -2.38 -0.02 1.38 16 33 H 0.11 2.64 8.14 -2.39 -0.02 2.62 16 34 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.05 1.43 4.98 -2.39 -0.01 1.42 16 37 H 0.06 1.30 8.14 -2.39 -0.02 1.29 16 38 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.07 2.22 8.14 -2.38 -0.02 2.20 16 Total: -1.00 -58.44 312.26 2.11 -56.34 By element: Atomic # 1 Polarization: 25.22 SS G_CDS: 0.26 Total: 25.48 kcal Atomic # 6 Polarization: -35.62 SS G_CDS: 3.67 Total: -31.95 kcal Atomic # 7 Polarization: -80.19 SS G_CDS: -2.33 Total: -82.52 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: -1.53 Total: -12.64 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Total: -58.44 2.11 -56.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069891007.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.929 kcal (2) G-P(sol) polarization free energy of solvation -58.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds