Wall clock time and date at job start Sun Mar 29 2020 23:05:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46722 * 2 1 4 4 H 1.08999 * 109.47375 * 55.48664 * 3 2 1 5 5 C 1.50709 * 109.46617 * 175.48544 * 3 2 1 6 6 H 1.08000 * 119.99327 * 119.99652 * 5 3 2 7 7 C 1.37876 * 120.00206 * 299.99878 * 5 3 2 8 8 N 1.31515 * 119.99919 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 119.99752 * 179.97438 * 7 5 3 10 10 H 1.48507 * 109.47012 * 60.00511 * 9 7 5 11 11 H 1.48502 * 109.46864 * 179.97438 * 9 7 5 12 12 H 1.48493 * 109.47434 * 299.99827 * 9 7 5 13 13 N 1.46897 * 109.47120 * 295.48520 * 3 2 1 14 14 C 1.46893 * 111.00161 * 151.98300 * 13 3 2 15 15 H 1.09000 * 109.54227 * 327.74963 * 14 13 3 16 16 C 1.53181 * 109.54496 * 88.01378 * 14 13 3 17 17 C 1.53096 * 109.16357 * 176.84889 * 16 14 13 18 18 O 1.42893 * 109.41503 * 302.39350 * 17 16 14 19 19 C 1.42907 * 114.10091 * 61.15927 * 18 17 16 20 20 C 1.53000 * 109.48400 * 178.85795 * 19 18 17 21 21 C 1.53001 * 109.47744 * 58.82373 * 19 18 17 22 22 C 1.53087 * 109.41254 * 298.84123 * 19 18 17 23 23 H 1.09007 * 109.47021 * 177.82067 * 1 2 3 24 24 H 1.08992 * 109.47394 * 297.82350 * 1 2 3 25 25 H 1.08999 * 109.47105 * 57.83084 * 1 2 3 26 26 H 1.08992 * 109.47240 * 239.99467 * 2 1 3 27 27 H 1.09000 * 109.46700 * 120.00001 * 2 1 3 28 28 H 0.96996 * 120.00039 * 180.02562 * 8 7 5 29 29 H 1.00898 * 110.99806 * 28.02605 * 13 3 2 30 30 H 1.09005 * 109.52240 * 296.75515 * 16 14 13 31 31 H 1.08996 * 109.51996 * 56.94693 * 16 14 13 32 32 H 1.09006 * 109.47789 * 182.41021 * 17 16 14 33 33 H 1.08999 * 109.48930 * 62.38191 * 17 16 14 34 34 H 1.08993 * 109.47216 * 179.97438 * 20 19 18 35 35 H 1.08995 * 109.47032 * 299.94429 * 20 19 18 36 36 H 1.08998 * 109.46931 * 59.94056 * 20 19 18 37 37 H 1.08995 * 109.46908 * 300.05699 * 21 19 18 38 38 H 1.08992 * 109.47227 * 60.05970 * 21 19 18 39 39 H 1.09001 * 109.46765 * 180.02562 * 21 19 18 40 40 H 1.09002 * 109.52298 * 297.70294 * 22 19 18 41 41 H 1.09002 * 109.57673 * 177.54260 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6121 1.9792 0.8468 5 6 3.5429 1.4440 0.1118 6 1 4.1418 1.8907 -0.6679 7 6 4.1530 0.8750 1.2095 8 7 3.4236 0.3305 2.1587 9 14 6.0159 0.8762 1.3477 10 1 6.5113 2.2762 1.3474 11 1 6.4189 0.2094 2.6119 12 1 6.5983 0.1446 0.1942 13 7 1.6413 2.1028 -1.2502 14 6 1.4942 3.5515 -1.0568 15 1 1.1493 3.7507 -0.0422 16 6 2.8441 4.2386 -1.2853 17 6 2.6645 5.7537 -1.1592 18 8 1.6834 6.1957 -2.0994 19 6 0.3889 5.6224 -1.9050 20 6 -0.5806 6.1868 -2.9453 21 6 -0.1141 5.9628 -0.5007 22 6 0.4771 4.1020 -2.0611 23 1 -0.3633 -1.0270 -0.0391 24 1 -0.3634 0.4796 0.9088 25 1 -0.3633 0.5471 -0.8699 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.8528 -0.0695 2.9311 29 1 0.7927 1.6990 -1.6177 30 1 3.5596 3.8932 -0.5390 31 1 3.2115 3.9972 -2.2827 32 1 3.6132 6.2504 -1.3631 33 1 2.3360 5.9981 -0.1490 34 1 -1.5678 5.7491 -2.7972 35 1 -0.6432 7.2692 -2.8341 36 1 -0.2216 5.9445 -3.9456 37 1 0.5770 5.5610 0.2401 38 1 -0.1768 7.0453 -0.3897 39 1 -1.1013 5.5251 -0.3524 40 1 0.7967 3.8578 -3.0742 41 1 -0.5000 3.6580 -1.8704 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069891009.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:30 Heat of formation + Delta-G solvation = -80.821539 kcal Electronic energy + Delta-G solvation = -18836.040651 eV Core-core repulsion = 16135.429140 eV Total energy + Delta-G solvation = -2700.611511 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.00316 -38.09471 -35.06132 -34.43174 -33.57862 -30.98841 -29.25992 -28.26133 -27.62746 -24.94313 -24.28750 -22.17697 -21.38717 -20.08140 -18.31163 -17.18262 -16.99404 -16.75318 -16.12059 -15.86884 -15.56593 -15.09853 -14.63249 -14.37169 -13.98529 -13.90568 -13.35793 -13.31330 -13.09203 -12.94313 -12.80747 -12.70050 -12.64720 -12.48348 -12.25910 -12.03633 -11.98280 -11.67420 -11.58013 -11.39388 -10.97896 -10.82890 -10.42333 -10.32302 -9.00975 -8.05171 -6.15357 1.40945 1.41998 1.49464 2.43873 2.85556 3.19662 3.50195 3.81023 3.92918 4.00677 4.18659 4.35623 4.37634 4.48454 4.51041 4.55891 4.60113 4.68304 4.70362 4.78953 4.85865 4.90699 4.93681 5.06071 5.11225 5.13145 5.17550 5.23525 5.33370 5.39347 5.42091 5.49332 5.62882 5.77868 5.92060 6.36945 6.39064 6.55915 6.97605 7.02626 7.52796 8.98020 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.025390 B = 0.007510 C = 0.006264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.545486 B = 3727.372898 C = 4468.810872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.124 4.124 3 C 0.228 3.772 4 H -0.032 1.032 5 C -0.502 4.502 6 H 0.053 0.947 7 C 0.009 3.991 8 N -0.922 5.922 9 Si 0.949 3.051 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.275 1.275 13 N -0.684 5.684 14 C 0.098 3.902 15 H 0.022 0.978 16 C -0.137 4.137 17 C 0.065 3.935 18 O -0.387 6.387 19 C 0.108 3.892 20 C -0.131 4.131 21 C -0.178 4.178 22 C -0.136 4.136 23 H 0.058 0.942 24 H 0.036 0.964 25 H 0.057 0.943 26 H 0.035 0.965 27 H 0.067 0.933 28 H 0.259 0.741 29 H 0.328 0.672 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.103 0.897 33 H 0.051 0.949 34 H 0.087 0.913 35 H 0.068 0.932 36 H 0.061 0.939 37 H 0.045 0.955 38 H 0.071 0.929 39 H 0.078 0.922 40 H 0.071 0.929 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.051 9.334 -6.765 14.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.163 4.163 3 C 0.119 3.881 4 H -0.015 1.015 5 C -0.541 4.541 6 H 0.071 0.929 7 C -0.189 4.189 8 N -0.562 5.562 9 Si 0.776 3.224 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.200 1.200 13 N -0.317 5.317 14 C -0.012 4.012 15 H 0.039 0.961 16 C -0.175 4.175 17 C -0.012 4.012 18 O -0.306 6.306 19 C 0.069 3.931 20 C -0.188 4.188 21 C -0.235 4.235 22 C -0.174 4.174 23 H 0.077 0.923 24 H 0.055 0.945 25 H 0.076 0.924 26 H 0.054 0.946 27 H 0.085 0.915 28 H 0.068 0.932 29 H 0.148 0.852 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.122 0.878 33 H 0.069 0.931 34 H 0.106 0.894 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.064 0.936 38 H 0.090 0.910 39 H 0.097 0.903 40 H 0.090 0.910 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.356 9.407 -6.978 13.831 hybrid contribution 0.455 -0.592 1.286 1.487 sum -6.901 8.815 -5.692 12.558 Atomic orbital electron populations 1.21750 0.96259 1.01245 1.00362 1.21631 0.94263 0.99218 1.01150 1.18972 0.94091 0.90423 0.84570 1.01473 1.21475 0.92662 1.35622 1.04331 0.92862 1.25652 1.01963 0.95572 0.95729 1.69991 1.36222 1.39895 1.10126 0.85742 0.81299 0.78247 0.77124 1.19910 1.21089 1.20008 1.60631 1.37562 1.02438 1.31023 1.21444 0.94892 0.88621 0.96245 0.96060 1.22158 0.98209 0.95173 1.01966 1.22600 0.92399 0.93451 0.92776 1.87885 1.19466 1.68051 1.55238 1.21633 0.83877 0.91382 0.96244 1.21743 0.97741 1.01788 0.97517 1.22440 1.02043 1.02639 0.96375 1.22372 0.99041 0.96123 0.99835 0.92299 0.94520 0.92444 0.94628 0.91455 0.93208 0.85229 0.92271 0.92297 0.87847 0.93112 0.89399 0.91250 0.91959 0.93568 0.90970 0.90345 0.90986 0.90206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.15 9.78 71.98 0.70 -4.45 16 2 C -0.12 -5.86 5.34 30.59 0.16 -5.69 16 3 C 0.23 11.40 2.04 44.17 0.09 11.49 16 4 H -0.03 -1.81 7.34 -2.39 -0.02 -1.83 16 5 C -0.50 -27.79 7.48 25.60 0.19 -27.60 16 6 H 0.05 2.99 6.95 -2.91 -0.02 2.97 16 7 C 0.01 0.48 5.29 84.65 0.45 0.93 16 8 N -0.92 -53.28 11.29 21.45 0.24 -53.04 16 9 Si 0.95 44.44 29.54 68.60 2.03 46.46 16 10 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 11 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 12 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 13 N -0.68 -28.76 6.17 -472.71 -2.91 -31.68 16 14 C 0.10 3.65 2.28 45.04 0.10 3.76 16 15 H 0.02 0.88 5.83 -2.39 -0.01 0.87 16 16 C -0.14 -5.15 5.24 30.69 0.16 -4.99 16 17 C 0.06 2.01 6.51 72.01 0.47 2.48 16 18 O -0.39 -11.65 10.24 -148.98 -1.52 -13.17 16 19 C 0.11 2.80 1.11 -10.76 -0.01 2.79 16 20 C -0.13 -2.56 8.85 71.98 0.64 -1.93 16 21 C -0.18 -4.31 7.94 71.98 0.57 -3.74 16 22 C -0.14 -3.92 4.16 30.68 0.13 -3.79 16 23 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 24 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.06 1.86 6.36 -2.39 -0.02 1.85 16 26 H 0.03 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.07 3.63 5.96 -2.39 -0.01 3.62 16 28 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 29 H 0.33 12.32 6.00 -89.70 -0.54 11.78 16 30 H 0.06 2.60 6.35 -2.38 -0.02 2.58 16 31 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.10 2.85 8.14 -2.38 -0.02 2.83 16 33 H 0.05 1.55 6.34 -2.39 -0.02 1.53 16 34 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.05 1.31 4.98 -2.39 -0.01 1.30 16 38 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 41 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -60.87 306.69 1.94 -58.93 By element: Atomic # 1 Polarization: 22.80 SS G_CDS: 0.46 Total: 23.25 kcal Atomic # 6 Polarization: -34.41 SS G_CDS: 3.65 Total: -30.76 kcal Atomic # 7 Polarization: -82.04 SS G_CDS: -2.67 Total: -84.72 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: -1.52 Total: -13.17 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.46 kcal Total: -60.87 1.94 -58.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069891009.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.894 kcal (2) G-P(sol) polarization free energy of solvation -60.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds