Wall clock time and date at job start Sun Mar 29 2020 23:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47055 * 2 1 4 4 H 1.08997 * 109.47341 * 306.29683 * 3 2 1 5 5 C 1.50700 * 109.47107 * 186.29288 * 3 2 1 6 6 H 1.08002 * 120.00157 * 245.72420 * 5 3 2 7 7 C 1.37874 * 120.00001 * 65.72371 * 5 3 2 8 8 N 1.31511 * 120.00196 * 190.92553 * 7 5 3 9 9 Si 1.86799 * 119.99976 * 10.92786 * 7 5 3 10 10 H 1.48503 * 109.47071 * 88.57685 * 9 7 5 11 11 H 1.48497 * 109.47216 * 208.58035 * 9 7 5 12 12 H 1.48500 * 109.47206 * 328.58491 * 9 7 5 13 13 N 1.46905 * 109.46917 * 66.29424 * 3 2 1 14 14 C 1.46897 * 110.99890 * 207.90165 * 13 3 2 15 15 H 1.09007 * 109.61764 * 322.41900 * 14 13 3 16 16 C 1.53184 * 109.60013 * 82.61511 * 14 13 3 17 17 C 1.53086 * 109.21799 * 176.78237 * 16 14 13 18 18 O 1.42903 * 109.41489 * 302.42664 * 17 16 14 19 19 C 1.42906 * 114.10085 * 61.15465 * 18 17 16 20 20 C 1.52998 * 109.48231 * 178.86049 * 19 18 17 21 21 C 1.53005 * 109.47948 * 58.82553 * 19 18 17 22 22 C 1.53092 * 109.41493 * 298.84805 * 19 18 17 23 23 H 1.09004 * 109.46756 * 304.41225 * 1 2 3 24 24 H 1.09000 * 109.47204 * 64.41273 * 1 2 3 25 25 H 1.08998 * 109.47196 * 184.41643 * 1 2 3 26 26 H 1.09000 * 109.46939 * 240.00745 * 2 1 3 27 27 H 1.09000 * 109.47673 * 119.99799 * 2 1 3 28 28 H 0.96995 * 120.00060 * 180.02562 * 8 7 5 29 29 H 1.00898 * 110.99889 * 331.85667 * 13 3 2 30 30 H 1.09001 * 109.46753 * 56.87567 * 16 14 13 31 31 H 1.08998 * 109.57205 * 296.75160 * 16 14 13 32 32 H 1.09000 * 109.48514 * 182.44323 * 17 16 14 33 33 H 1.09002 * 109.49132 * 62.40798 * 17 16 14 34 34 H 1.08999 * 109.46848 * 179.97438 * 20 19 18 35 35 H 1.08995 * 109.47262 * 299.94529 * 20 19 18 36 36 H 1.08993 * 109.46948 * 59.94609 * 20 19 18 37 37 H 1.09002 * 109.46886 * 300.05990 * 21 19 18 38 38 H 1.08996 * 109.46817 * 60.05731 * 21 19 18 39 39 H 1.08992 * 109.47274 * 180.02562 * 21 19 18 40 40 H 1.08998 * 109.52315 * 177.51226 * 22 19 18 41 41 H 1.09010 * 109.51824 * 297.63639 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5876 1.9879 -0.8282 5 6 3.5389 1.4454 -0.1557 6 1 4.1649 1.7996 0.6500 7 6 4.1112 0.9959 -1.3268 8 7 5.4093 0.7946 -1.3894 9 14 3.0427 0.6729 -2.8246 10 1 2.9165 1.9200 -3.6209 11 1 3.6662 -0.3859 -3.6584 12 1 1.6958 0.2280 -2.3852 13 7 1.6782 2.0898 1.2682 14 6 1.5286 3.5408 1.0947 15 1 2.2810 3.9053 0.3953 16 6 0.1310 3.8518 0.5500 17 6 -0.0441 5.3692 0.4485 18 8 0.1626 5.9582 1.7340 19 6 1.4687 5.7418 2.2719 20 6 1.5831 6.4376 3.6297 21 6 2.5160 6.3148 1.3148 22 6 1.7046 4.2393 2.4465 23 1 -0.3633 0.5808 0.8479 24 1 -0.3633 0.4438 -0.9269 25 1 -0.3633 -1.0246 0.0791 26 1 1.8933 -0.5137 -0.8901 27 1 1.8934 -0.5138 0.8900 28 1 5.8119 0.4787 -2.2134 29 1 0.8396 1.6835 1.6552 30 1 -0.6211 3.4426 1.2246 31 1 0.0163 3.4050 -0.4375 32 1 -1.0524 5.5965 0.1024 33 1 0.6821 5.7727 -0.2571 34 1 2.5793 6.2720 4.0399 35 1 1.4152 7.5073 3.5051 36 1 0.8367 6.0295 4.3110 37 1 2.4339 5.8193 0.3474 38 1 2.3479 7.3845 1.1905 39 1 3.5122 6.1493 1.7249 40 1 2.7163 4.0699 2.8151 41 1 0.9849 3.8382 3.1603 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069891011.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:32 Heat of formation + Delta-G solvation = -57.854108 kcal Electronic energy + Delta-G solvation = -18890.447724 eV Core-core repulsion = 16190.832156 eV Total energy + Delta-G solvation = -2699.615568 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.83234 -36.68325 -33.53052 -33.27777 -31.92621 -29.70330 -27.80974 -27.16849 -26.51108 -23.28312 -22.56059 -21.06762 -19.77851 -18.90232 -16.73829 -15.99300 -15.89577 -15.11365 -14.72218 -14.18133 -13.98196 -13.86260 -13.49271 -12.96608 -12.76888 -12.43307 -12.20527 -12.14732 -11.90287 -11.76032 -11.64356 -11.45507 -11.00402 -10.91036 -10.77032 -10.63627 -10.62065 -10.24038 -9.97381 -9.69271 -9.39463 -9.32407 -9.04685 -8.49387 -7.33293 -6.05056 -3.99285 3.25504 3.34853 3.36937 3.92804 4.42114 4.79809 5.02709 5.08994 5.10822 5.23188 5.29027 5.47930 5.56413 5.65386 5.72962 5.78027 5.80567 5.82441 5.86811 5.91854 6.00986 6.06347 6.09816 6.16750 6.24306 6.33875 6.41981 6.50722 6.52307 6.67043 6.69023 6.80077 6.96871 7.23792 7.47955 7.77863 7.99942 8.29409 8.77801 9.10381 9.60495 11.08460 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.026378 B = 0.007559 C = 0.006919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.236119 B = 3703.496308 C = 4045.578000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.135 4.135 3 C 0.194 3.806 4 H -0.004 1.004 5 C -0.497 4.497 6 H 0.079 0.921 7 C 0.069 3.931 8 N -0.898 5.898 9 Si 0.856 3.144 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.249 1.249 13 N -0.668 5.668 14 C 0.093 3.907 15 H 0.087 0.913 16 C -0.186 4.186 17 C 0.064 3.936 18 O -0.379 6.379 19 C 0.110 3.890 20 C -0.134 4.134 21 C -0.179 4.179 22 C -0.126 4.126 23 H 0.046 0.954 24 H 0.042 0.958 25 H 0.043 0.957 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.262 0.738 29 H 0.319 0.681 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.052 0.948 34 H 0.070 0.930 35 H 0.058 0.942 36 H 0.060 0.940 37 H 0.066 0.934 38 H 0.056 0.944 39 H 0.069 0.931 40 H 0.078 0.922 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.306 7.940 4.927 13.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.173 4.173 3 C 0.085 3.915 4 H 0.014 0.986 5 C -0.536 4.536 6 H 0.097 0.903 7 C -0.132 4.132 8 N -0.536 5.536 9 Si 0.684 3.316 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.174 1.174 13 N -0.298 5.298 14 C -0.018 4.018 15 H 0.105 0.895 16 C -0.226 4.226 17 C -0.013 4.013 18 O -0.299 6.299 19 C 0.071 3.929 20 C -0.192 4.192 21 C -0.237 4.237 22 C -0.164 4.164 23 H 0.065 0.935 24 H 0.061 0.939 25 H 0.062 0.938 26 H 0.083 0.917 27 H 0.081 0.919 28 H 0.072 0.928 29 H 0.137 0.863 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.103 0.897 33 H 0.071 0.929 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.075 0.925 39 H 0.088 0.912 40 H 0.097 0.903 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.618 7.991 5.127 13.515 hybrid contribution -1.112 -0.430 -1.714 2.088 sum -10.730 7.561 3.413 13.563 Atomic orbital electron populations 1.21917 0.98637 1.00293 1.00402 1.22227 0.92474 1.00335 1.02269 1.19513 0.96635 0.89425 0.85930 0.98606 1.21025 0.89266 1.41814 1.01446 0.90292 1.24928 0.94688 0.95088 0.98478 1.69933 1.10398 1.46204 1.27114 0.87393 0.82350 0.78151 0.83755 1.20865 1.21487 1.17371 1.60610 1.38397 1.01268 1.29505 1.21565 0.94251 0.89997 0.96017 0.89463 1.22996 1.00260 0.97041 1.02256 1.22473 1.01004 0.92421 0.85425 1.87887 1.32049 1.76004 1.33965 1.21527 0.82922 0.94781 0.93673 1.21727 1.02204 1.00365 0.94857 1.22447 0.99599 1.00874 1.00737 1.22150 1.02940 0.93174 0.98179 0.93517 0.93864 0.93775 0.91704 0.91925 0.92828 0.86290 0.91694 0.91264 0.89658 0.92943 0.91092 0.92273 0.92093 0.91535 0.92458 0.91229 0.90287 0.91852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 9.82 37.16 0.36 -2.28 16 2 C -0.13 -2.84 4.72 -26.73 -0.13 -2.97 16 3 C 0.19 4.41 1.38 -68.86 -0.10 4.32 16 4 H 0.00 -0.08 5.77 -51.93 -0.30 -0.38 16 5 C -0.50 -13.79 9.10 -34.44 -0.31 -14.10 16 6 H 0.08 2.45 8.06 -52.49 -0.42 2.02 16 7 C 0.07 1.98 5.38 -17.82 -0.10 1.88 16 8 N -0.90 -27.34 13.96 55.43 0.77 -26.56 16 9 Si 0.86 20.86 25.80 -169.99 -4.39 16.47 16 10 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 12 H -0.25 -5.64 5.23 56.52 0.30 -5.34 16 13 N -0.67 -13.34 6.05 -100.75 -0.61 -13.95 16 14 C 0.09 1.64 2.06 -67.53 -0.14 1.51 16 15 H 0.09 1.77 6.26 -51.93 -0.33 1.45 16 16 C -0.19 -2.87 5.37 -26.59 -0.14 -3.01 16 17 C 0.06 0.90 6.52 37.20 0.24 1.14 16 18 O -0.38 -5.66 10.24 -35.23 -0.36 -6.02 16 19 C 0.11 1.55 1.11 -90.57 -0.10 1.45 16 20 C -0.13 -1.57 8.85 37.16 0.33 -1.24 16 21 C -0.18 -2.46 7.94 37.16 0.29 -2.17 16 22 C -0.13 -1.98 4.53 -26.59 -0.12 -2.10 16 23 H 0.05 0.72 6.40 -51.93 -0.33 0.39 16 24 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.06 1.46 4.61 -51.93 -0.24 1.22 16 27 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 28 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 29 H 0.32 5.76 6.25 -39.29 -0.25 5.51 16 30 H 0.06 0.96 8.10 -51.93 -0.42 0.54 16 31 H 0.07 1.11 7.36 -51.93 -0.38 0.73 16 32 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.05 0.73 6.34 -51.93 -0.33 0.40 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 1.00 4.98 -51.93 -0.26 0.74 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 41 H 0.06 0.97 8.14 -51.92 -0.42 0.55 16 LS Contribution 304.25 15.07 4.59 4.59 Total: -1.00 -29.63 304.25 -7.05 -36.67 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -7.15 Total: 6.38 kcal Atomic # 6 Polarization: -17.68 SS G_CDS: 0.10 Total: -17.58 kcal Atomic # 7 Polarization: -40.68 SS G_CDS: 0.16 Total: -40.51 kcal Atomic # 8 Polarization: -5.66 SS G_CDS: -0.36 Total: -6.02 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.39 Total: 16.47 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -29.63 -7.05 -36.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069891011.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.180 kcal (2) G-P(sol) polarization free energy of solvation -29.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds