Wall clock time and date at job start Sun Mar 29 2020 23:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47055 * 2 1 4 4 H 1.08997 * 109.47341 * 306.29683 * 3 2 1 5 5 C 1.50700 * 109.47107 * 186.29288 * 3 2 1 6 6 H 1.08002 * 120.00157 * 245.72420 * 5 3 2 7 7 C 1.37874 * 120.00001 * 65.72371 * 5 3 2 8 8 N 1.31511 * 120.00196 * 190.92553 * 7 5 3 9 9 Si 1.86799 * 119.99976 * 10.92786 * 7 5 3 10 10 H 1.48503 * 109.47071 * 88.57685 * 9 7 5 11 11 H 1.48497 * 109.47216 * 208.58035 * 9 7 5 12 12 H 1.48500 * 109.47206 * 328.58491 * 9 7 5 13 13 N 1.46905 * 109.46917 * 66.29424 * 3 2 1 14 14 C 1.46897 * 110.99890 * 207.90165 * 13 3 2 15 15 H 1.09007 * 109.61764 * 322.41900 * 14 13 3 16 16 C 1.53184 * 109.60013 * 82.61511 * 14 13 3 17 17 C 1.53086 * 109.21799 * 176.78237 * 16 14 13 18 18 O 1.42903 * 109.41489 * 302.42664 * 17 16 14 19 19 C 1.42906 * 114.10085 * 61.15465 * 18 17 16 20 20 C 1.52998 * 109.48231 * 178.86049 * 19 18 17 21 21 C 1.53005 * 109.47948 * 58.82553 * 19 18 17 22 22 C 1.53092 * 109.41493 * 298.84805 * 19 18 17 23 23 H 1.09004 * 109.46756 * 304.41225 * 1 2 3 24 24 H 1.09000 * 109.47204 * 64.41273 * 1 2 3 25 25 H 1.08998 * 109.47196 * 184.41643 * 1 2 3 26 26 H 1.09000 * 109.46939 * 240.00745 * 2 1 3 27 27 H 1.09000 * 109.47673 * 119.99799 * 2 1 3 28 28 H 0.96995 * 120.00060 * 180.02562 * 8 7 5 29 29 H 1.00898 * 110.99889 * 331.85667 * 13 3 2 30 30 H 1.09001 * 109.46753 * 56.87567 * 16 14 13 31 31 H 1.08998 * 109.57205 * 296.75160 * 16 14 13 32 32 H 1.09000 * 109.48514 * 182.44323 * 17 16 14 33 33 H 1.09002 * 109.49132 * 62.40798 * 17 16 14 34 34 H 1.08999 * 109.46848 * 179.97438 * 20 19 18 35 35 H 1.08995 * 109.47262 * 299.94529 * 20 19 18 36 36 H 1.08993 * 109.46948 * 59.94609 * 20 19 18 37 37 H 1.09002 * 109.46886 * 300.05990 * 21 19 18 38 38 H 1.08996 * 109.46817 * 60.05731 * 21 19 18 39 39 H 1.08992 * 109.47274 * 180.02562 * 21 19 18 40 40 H 1.08998 * 109.52315 * 177.51226 * 22 19 18 41 41 H 1.09010 * 109.51824 * 297.63639 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5876 1.9879 -0.8282 5 6 3.5389 1.4454 -0.1557 6 1 4.1649 1.7996 0.6500 7 6 4.1112 0.9959 -1.3268 8 7 5.4093 0.7946 -1.3894 9 14 3.0427 0.6729 -2.8246 10 1 2.9165 1.9200 -3.6209 11 1 3.6662 -0.3859 -3.6584 12 1 1.6958 0.2280 -2.3852 13 7 1.6782 2.0898 1.2682 14 6 1.5286 3.5408 1.0947 15 1 2.2810 3.9053 0.3953 16 6 0.1310 3.8518 0.5500 17 6 -0.0441 5.3692 0.4485 18 8 0.1626 5.9582 1.7340 19 6 1.4687 5.7418 2.2719 20 6 1.5831 6.4376 3.6297 21 6 2.5160 6.3148 1.3148 22 6 1.7046 4.2393 2.4465 23 1 -0.3633 0.5808 0.8479 24 1 -0.3633 0.4438 -0.9269 25 1 -0.3633 -1.0246 0.0791 26 1 1.8933 -0.5137 -0.8901 27 1 1.8934 -0.5138 0.8900 28 1 5.8119 0.4787 -2.2134 29 1 0.8396 1.6835 1.6552 30 1 -0.6211 3.4426 1.2246 31 1 0.0163 3.4050 -0.4375 32 1 -1.0524 5.5965 0.1024 33 1 0.6821 5.7727 -0.2571 34 1 2.5793 6.2720 4.0399 35 1 1.4152 7.5073 3.5051 36 1 0.8367 6.0295 4.3110 37 1 2.4339 5.8193 0.3474 38 1 2.3479 7.3845 1.1905 39 1 3.5122 6.1493 1.7249 40 1 2.7163 4.0699 2.8151 41 1 0.9849 3.8382 3.1603 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069891011.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:32 Heat of formation + Delta-G solvation = -78.330590 kcal Electronic energy + Delta-G solvation = -18891.335651 eV Core-core repulsion = 16190.832156 eV Total energy + Delta-G solvation = -2700.503495 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.05674 -38.29145 -35.05886 -34.49561 -33.88377 -31.11815 -29.29103 -28.24940 -28.13749 -24.69129 -24.13750 -22.38514 -21.56343 -20.13322 -18.83484 -17.28006 -17.08724 -16.79961 -16.19217 -15.69547 -15.36823 -15.29648 -14.86782 -14.70947 -14.11564 -13.92382 -13.58544 -13.44810 -13.25091 -12.95137 -12.85458 -12.70557 -12.59957 -12.50021 -12.21970 -12.10354 -11.96197 -11.93141 -11.63121 -11.23861 -11.19389 -10.85297 -10.64024 -10.39888 -8.96819 -8.26546 -6.25479 1.31607 1.34580 1.43701 2.34818 2.83284 3.06663 3.40782 3.82884 3.89375 3.94561 4.13163 4.25166 4.30134 4.37382 4.40691 4.48269 4.49069 4.56148 4.68406 4.77700 4.80825 4.88341 4.89901 4.93247 5.04123 5.09562 5.09847 5.13981 5.16509 5.26740 5.31866 5.36809 5.44546 5.51205 5.79560 6.11919 6.34539 6.56047 6.80909 6.98789 7.38840 8.90937 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.026378 B = 0.007559 C = 0.006919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.236119 B = 3703.496308 C = 4045.578000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.135 4.135 3 C 0.202 3.798 4 H -0.004 1.004 5 C -0.500 4.500 6 H 0.027 0.973 7 C 0.010 3.990 8 N -0.950 5.950 9 Si 0.922 3.078 10 H -0.280 1.280 11 H -0.290 1.290 12 H -0.217 1.217 13 N -0.679 5.679 14 C 0.091 3.909 15 H 0.053 0.947 16 C -0.177 4.177 17 C 0.063 3.937 18 O -0.383 6.383 19 C 0.111 3.889 20 C -0.131 4.131 21 C -0.178 4.178 22 C -0.120 4.120 23 H 0.062 0.938 24 H 0.048 0.952 25 H 0.066 0.934 26 H 0.050 0.950 27 H 0.053 0.947 28 H 0.263 0.737 29 H 0.334 0.666 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.112 0.888 33 H 0.049 0.951 34 H 0.079 0.921 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.048 0.952 38 H 0.073 0.927 39 H 0.066 0.934 40 H 0.062 0.938 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.410 8.383 4.880 16.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.173 4.173 3 C 0.092 3.908 4 H 0.014 0.986 5 C -0.539 4.539 6 H 0.046 0.954 7 C -0.186 4.186 8 N -0.591 5.591 9 Si 0.746 3.254 10 H -0.206 1.206 11 H -0.216 1.216 12 H -0.139 1.139 13 N -0.310 5.310 14 C -0.019 4.019 15 H 0.072 0.928 16 C -0.217 4.217 17 C -0.014 4.014 18 O -0.303 6.303 19 C 0.071 3.929 20 C -0.188 4.188 21 C -0.235 4.235 22 C -0.159 4.159 23 H 0.081 0.919 24 H 0.067 0.933 25 H 0.085 0.915 26 H 0.068 0.932 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.153 0.847 30 H 0.096 0.904 31 H 0.083 0.917 32 H 0.130 0.870 33 H 0.067 0.933 34 H 0.097 0.903 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.067 0.933 38 H 0.092 0.908 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -12.756 8.444 5.105 16.127 hybrid contribution -0.050 -0.532 -1.595 1.683 sum -12.806 7.912 3.510 15.457 Atomic orbital electron populations 1.21828 0.94819 1.02276 1.01449 1.22105 0.95835 0.98207 1.01183 1.19277 0.93192 0.91098 0.87208 0.98610 1.21290 0.91875 1.40727 0.99964 0.95444 1.25786 0.95933 0.95056 1.01845 1.70097 1.12724 1.48208 1.28078 0.86327 0.81928 0.77965 0.79179 1.20616 1.21591 1.13927 1.60443 1.39647 1.02625 1.28328 1.21539 0.95102 0.88636 0.96664 0.92846 1.22883 0.98412 0.98354 1.02023 1.22571 1.02467 0.91163 0.85186 1.87894 1.32157 1.75946 1.34270 1.21591 0.82777 0.93581 0.94951 1.21729 1.02963 1.00803 0.93340 1.22434 0.99594 1.01709 0.99806 1.22091 1.02207 0.94592 0.96965 0.91908 0.93296 0.91472 0.93156 0.92814 0.92848 0.84663 0.90423 0.91672 0.87023 0.93264 0.90263 0.91093 0.91562 0.93323 0.90813 0.91501 0.91905 0.91062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.43 9.82 71.98 0.71 -3.73 16 2 C -0.13 -5.47 4.72 30.60 0.14 -5.32 16 3 C 0.20 9.12 1.38 44.17 0.06 9.19 16 4 H 0.00 -0.16 5.77 -2.39 -0.01 -0.18 16 5 C -0.50 -28.77 9.10 25.60 0.23 -28.53 16 6 H 0.03 1.81 8.06 -2.91 -0.02 1.78 16 7 C 0.01 0.60 5.38 84.65 0.46 1.06 16 8 N -0.95 -60.21 13.96 21.45 0.30 -59.91 16 9 Si 0.92 43.26 25.80 68.60 1.77 45.03 16 10 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 11 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 12 H -0.22 -8.96 5.23 99.48 0.52 -8.44 16 13 N -0.68 -26.88 6.05 -472.67 -2.86 -29.74 16 14 C 0.09 3.21 2.06 45.04 0.09 3.30 16 15 H 0.05 2.24 6.26 -2.38 -0.01 2.23 16 16 C -0.18 -5.10 5.37 30.68 0.16 -4.93 16 17 C 0.06 1.62 6.52 72.01 0.47 2.09 16 18 O -0.38 -10.47 10.24 -148.98 -1.52 -12.00 16 19 C 0.11 2.94 1.11 -10.76 -0.01 2.93 16 20 C -0.13 -2.79 8.85 71.98 0.64 -2.15 16 21 C -0.18 -4.82 7.94 71.98 0.57 -4.24 16 22 C -0.12 -3.70 4.53 30.68 0.14 -3.56 16 23 H 0.06 1.69 6.40 -2.38 -0.02 1.68 16 24 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 26 H 0.05 2.16 4.61 -2.39 -0.01 2.15 16 27 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 28 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 29 H 0.33 11.43 6.25 -89.70 -0.56 10.87 16 30 H 0.08 2.05 8.10 -2.39 -0.02 2.03 16 31 H 0.06 1.93 7.36 -2.39 -0.02 1.92 16 32 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.05 1.30 6.34 -2.39 -0.02 1.28 16 34 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.05 1.48 4.98 -2.39 -0.01 1.46 16 38 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 Total: -1.00 -66.18 304.25 1.59 -64.59 By element: Atomic # 1 Polarization: 25.69 SS G_CDS: 0.25 Total: 25.94 kcal Atomic # 6 Polarization: -37.57 SS G_CDS: 3.66 Total: -33.91 kcal Atomic # 7 Polarization: -87.10 SS G_CDS: -2.56 Total: -89.66 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: -1.52 Total: -12.00 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 1.77 Total: 45.03 kcal Total: -66.18 1.59 -64.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069891011.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.739 kcal (2) G-P(sol) polarization free energy of solvation -66.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds