Wall clock time and date at job start Sun Mar 29 2020 23:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46982 * 2 1 4 4 H 1.08996 * 109.47774 * 55.82020 * 3 2 1 5 5 C 1.50707 * 109.46934 * 175.82057 * 3 2 1 6 6 H 1.08002 * 119.99755 * 119.99621 * 5 3 2 7 7 C 1.37872 * 119.99839 * 299.99505 * 5 3 2 8 8 N 1.31512 * 120.00289 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99750 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47064 * 60.00368 * 9 7 5 11 11 H 1.48500 * 109.46745 * 180.02562 * 9 7 5 12 12 H 1.48494 * 109.47209 * 299.99833 * 9 7 5 13 13 N 1.46905 * 109.47022 * 295.81398 * 3 2 1 14 14 C 1.46854 * 110.99820 * 170.15807 * 13 3 2 15 15 C 1.53034 * 109.52051 * 185.84294 * 14 13 3 16 16 C 1.53123 * 109.28014 * 300.82420 * 15 14 13 17 17 C 1.52998 * 109.52178 * 177.56188 * 16 15 14 18 18 O 1.42900 * 109.46973 * 174.99907 * 17 16 15 19 19 C 1.42901 * 113.99995 * 180.02562 * 18 17 16 20 20 C 1.53112 * 109.16044 * 57.65536 * 16 15 14 21 21 C 1.46835 * 111.00389 * 294.37128 * 13 3 2 22 22 H 1.08999 * 109.46658 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.46718 * 300.00375 * 1 2 3 24 24 H 1.08998 * 109.47116 * 60.00094 * 1 2 3 25 25 H 1.08996 * 109.47362 * 240.00018 * 2 1 3 26 26 H 1.08998 * 109.47116 * 119.99906 * 2 1 3 27 27 H 0.96999 * 120.00174 * 179.97438 * 8 7 5 28 28 H 1.08999 * 109.46097 * 65.82815 * 14 13 3 29 29 H 1.09001 * 109.46298 * 305.85921 * 14 13 3 30 30 H 1.09003 * 109.50265 * 180.87992 * 15 14 13 31 31 H 1.08998 * 109.50199 * 60.76405 * 15 14 13 32 32 H 1.09004 * 109.52194 * 297.68794 * 16 15 14 33 33 H 1.09002 * 109.47076 * 55.00069 * 17 16 15 34 34 H 1.09001 * 109.47181 * 294.99618 * 17 16 15 35 35 H 1.08998 * 109.47597 * 59.99984 * 19 18 17 36 36 H 1.09005 * 109.46730 * 299.99579 * 19 18 17 37 37 H 1.08998 * 109.46882 * 179.97438 * 19 18 17 38 38 H 1.08999 * 109.50471 * 62.28707 * 20 16 15 39 39 H 1.09001 * 109.50474 * 182.40584 * 20 16 15 40 40 H 1.08998 * 109.46596 * 294.17646 * 21 13 3 41 41 H 1.09001 * 109.46262 * 54.14401 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6169 1.9776 0.8501 5 6 3.5435 1.4437 0.1036 6 1 4.1383 1.8920 -0.6786 7 6 4.1596 0.8727 1.1968 8 7 3.4354 0.3264 2.1490 9 14 6.0232 0.8749 1.3255 10 1 6.5177 2.2751 1.3258 11 1 6.4331 0.2043 2.5855 12 1 6.6002 0.1463 0.1673 13 7 1.6346 2.1052 -1.2468 14 6 1.8998 3.5483 -1.1861 15 6 1.3344 4.2252 -2.4367 16 6 1.9903 3.6186 -3.6803 17 6 1.3852 4.2486 -4.9363 18 8 2.0772 3.7685 -6.0907 19 6 1.5879 4.2988 -7.3242 20 6 1.7403 2.1081 -3.6941 21 6 2.2939 1.4925 -2.4070 22 1 -0.3632 -1.0277 0.0005 23 1 -0.3632 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 3.8689 -0.0757 2.9179 28 1 2.9753 3.7181 -1.1360 29 1 1.4243 3.9679 -0.2996 30 1 1.5451 5.2940 -2.3988 31 1 0.2568 4.0675 -2.4801 32 1 3.0630 3.8110 -3.6569 33 1 1.4801 5.3330 -4.8807 34 1 0.3313 3.9791 -5.0063 35 1 1.6873 5.3842 -7.3179 36 1 0.5381 4.0308 -7.4438 37 1 2.1652 3.8862 -8.1515 38 1 0.6690 1.9171 -3.7573 39 1 2.2411 1.6642 -4.5545 40 1 3.3676 1.6718 -2.3512 41 1 2.1048 0.4190 -2.4072 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070081036.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:00:35 Heat of formation + Delta-G solvation = -61.364874 kcal Electronic energy + Delta-G solvation = -18514.054479 eV Core-core repulsion = 15814.286673 eV Total energy + Delta-G solvation = -2699.767806 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.87157 -37.47156 -34.78735 -32.08450 -30.96653 -30.07020 -27.81446 -26.36551 -25.10397 -22.92456 -22.50641 -21.34599 -19.45314 -18.86368 -16.42375 -16.17089 -15.67718 -15.46073 -14.88272 -14.24665 -13.95281 -13.58158 -13.29815 -12.87216 -12.66256 -12.61591 -12.04033 -11.82677 -11.53693 -11.37657 -11.19172 -11.06150 -10.83666 -10.65983 -10.49397 -10.32183 -10.06483 -9.98556 -9.65114 -9.62296 -9.55223 -9.17862 -9.01080 -8.31605 -7.02934 -5.94303 -4.07689 3.30473 3.35460 3.38483 3.81331 4.42921 4.99533 5.09086 5.17415 5.26376 5.29131 5.30173 5.38361 5.53864 5.59413 5.72225 5.88571 5.99670 6.15949 6.21943 6.35429 6.39478 6.51956 6.52710 6.56261 6.62919 6.71743 6.80071 6.86519 7.00627 7.17859 7.21030 7.25264 7.43211 7.66763 7.82004 8.05433 8.22461 8.40314 8.55329 9.03020 9.59710 11.04507 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.026841 B = 0.006382 C = 0.005696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.920379 B = 4386.466053 C = 4914.181452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.111 4.111 3 C 0.214 3.786 4 H 0.037 0.963 5 C -0.542 4.542 6 H 0.056 0.944 7 C 0.068 3.932 8 N -0.886 5.886 9 Si 0.886 3.114 10 H -0.279 1.279 11 H -0.287 1.287 12 H -0.278 1.278 13 N -0.534 5.534 14 C 0.065 3.935 15 C -0.107 4.107 16 C -0.085 4.085 17 C 0.068 3.932 18 O -0.389 6.389 19 C 0.032 3.968 20 C -0.106 4.106 21 C 0.062 3.938 22 H 0.024 0.976 23 H 0.037 0.963 24 H 0.048 0.952 25 H 0.032 0.968 26 H 0.091 0.909 27 H 0.261 0.739 28 H 0.034 0.966 29 H 0.063 0.937 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.043 0.957 34 H 0.047 0.953 35 H 0.037 0.963 36 H 0.038 0.962 37 H 0.082 0.918 38 H 0.059 0.941 39 H 0.060 0.940 40 H 0.036 0.964 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.907 6.270 -12.022 14.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.149 4.149 3 C 0.107 3.893 4 H 0.054 0.946 5 C -0.581 4.581 6 H 0.074 0.926 7 C -0.134 4.134 8 N -0.525 5.525 9 Si 0.714 3.286 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.204 1.204 13 N -0.259 5.259 14 C -0.063 4.063 15 C -0.145 4.145 16 C -0.104 4.104 17 C -0.009 4.009 18 O -0.308 6.308 19 C -0.065 4.065 20 C -0.144 4.144 21 C -0.067 4.067 22 H 0.043 0.957 23 H 0.057 0.943 24 H 0.067 0.933 25 H 0.051 0.949 26 H 0.109 0.891 27 H 0.071 0.929 28 H 0.053 0.947 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.055 0.945 36 H 0.057 0.943 37 H 0.101 0.899 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.054 0.946 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.252 5.977 -11.869 14.289 hybrid contribution 1.764 0.323 0.167 1.801 sum -3.488 6.300 -11.702 13.740 Atomic orbital electron populations 1.21703 0.98921 0.98312 1.00548 1.21594 0.92186 0.99243 1.01874 1.19258 0.92841 0.91142 0.86016 0.94552 1.21730 0.92907 1.37782 1.05671 0.92623 1.24898 0.97733 0.95096 0.95652 1.69864 1.34877 1.38156 1.09590 0.86762 0.86391 0.78163 0.77311 1.20434 1.21273 1.20354 1.62393 1.57365 1.01530 1.04567 1.21791 0.98617 0.90154 0.95778 1.21596 1.00464 0.98182 0.94273 1.21189 1.00502 0.96625 0.92036 1.22672 0.95493 0.97053 0.85642 1.87911 1.59385 1.69392 1.14112 1.22695 0.98920 0.97886 0.86976 1.21616 1.01041 0.93775 0.97940 1.21900 0.96673 0.98684 0.89401 0.95710 0.94334 0.93323 0.94894 0.89076 0.92906 0.94749 0.91827 0.92620 0.91690 0.90956 0.93849 0.93446 0.94458 0.94316 0.89949 0.92228 0.92110 0.94570 0.91305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 9.79 37.16 0.36 -2.47 16 2 C -0.11 -2.64 5.14 -26.73 -0.14 -2.78 16 3 C 0.21 5.27 1.72 -68.86 -0.12 5.15 16 4 H 0.04 1.00 7.99 -51.93 -0.41 0.58 16 5 C -0.54 -14.52 7.23 -34.44 -0.25 -14.77 16 6 H 0.06 1.51 5.84 -52.49 -0.31 1.20 16 7 C 0.07 1.87 5.29 -17.82 -0.09 1.78 16 8 N -0.89 -24.99 11.29 55.43 0.63 -24.36 16 9 Si 0.89 21.30 29.54 -169.99 -5.02 16.27 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 N -0.53 -11.27 4.02 -228.08 -0.92 -12.19 16 14 C 0.07 1.26 5.19 -3.83 -0.02 1.24 16 15 C -0.11 -1.64 5.38 -26.65 -0.14 -1.78 16 16 C -0.08 -1.30 2.49 -90.50 -0.23 -1.52 16 17 C 0.07 0.88 5.32 37.16 0.20 1.08 16 18 O -0.39 -5.37 10.30 -35.23 -0.36 -5.74 16 19 C 0.03 0.31 11.01 101.05 1.11 1.43 16 20 C -0.11 -1.76 5.25 -26.65 -0.14 -1.90 16 21 C 0.06 1.24 4.78 -3.84 -0.02 1.22 16 22 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 23 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.05 0.96 7.73 -51.93 -0.40 0.56 16 25 H 0.03 0.78 6.24 -51.93 -0.32 0.45 16 26 H 0.09 2.43 5.97 -51.93 -0.31 2.12 16 27 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 28 H 0.03 0.72 7.28 -51.93 -0.38 0.34 16 29 H 0.06 1.23 8.02 -51.93 -0.42 0.81 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 37 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.06 0.99 7.91 -51.93 -0.41 0.58 16 40 H 0.04 0.80 6.38 -51.93 -0.33 0.47 16 41 H 0.07 1.43 6.13 -51.93 -0.32 1.11 16 LS Contribution 312.43 15.07 4.71 4.71 Total: -1.00 -27.93 312.43 -7.84 -35.76 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -7.40 Total: -1.13 kcal Atomic # 6 Polarization: -13.86 SS G_CDS: 0.53 Total: -13.33 kcal Atomic # 7 Polarization: -36.26 SS G_CDS: -0.29 Total: -36.55 kcal Atomic # 8 Polarization: -5.37 SS G_CDS: -0.36 Total: -5.74 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -27.93 -7.84 -35.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070081036.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.604 kcal (2) G-P(sol) polarization free energy of solvation -27.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds