Wall clock time and date at job start Sun Mar 29 2020 23:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46982 * 2 1 4 4 H 1.08996 * 109.47774 * 55.82020 * 3 2 1 5 5 C 1.50707 * 109.46934 * 175.82057 * 3 2 1 6 6 H 1.08002 * 119.99755 * 119.99621 * 5 3 2 7 7 C 1.37872 * 119.99839 * 299.99505 * 5 3 2 8 8 N 1.31512 * 120.00289 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99750 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47064 * 60.00368 * 9 7 5 11 11 H 1.48500 * 109.46745 * 180.02562 * 9 7 5 12 12 H 1.48494 * 109.47209 * 299.99833 * 9 7 5 13 13 N 1.46905 * 109.47022 * 295.81398 * 3 2 1 14 14 C 1.46854 * 110.99820 * 170.15807 * 13 3 2 15 15 C 1.53034 * 109.52051 * 185.84294 * 14 13 3 16 16 C 1.53123 * 109.28014 * 300.82420 * 15 14 13 17 17 C 1.52998 * 109.52178 * 177.56188 * 16 15 14 18 18 O 1.42900 * 109.46973 * 174.99907 * 17 16 15 19 19 C 1.42901 * 113.99995 * 180.02562 * 18 17 16 20 20 C 1.53112 * 109.16044 * 57.65536 * 16 15 14 21 21 C 1.46835 * 111.00389 * 294.37128 * 13 3 2 22 22 H 1.08999 * 109.46658 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.46718 * 300.00375 * 1 2 3 24 24 H 1.08998 * 109.47116 * 60.00094 * 1 2 3 25 25 H 1.08996 * 109.47362 * 240.00018 * 2 1 3 26 26 H 1.08998 * 109.47116 * 119.99906 * 2 1 3 27 27 H 0.96999 * 120.00174 * 179.97438 * 8 7 5 28 28 H 1.08999 * 109.46097 * 65.82815 * 14 13 3 29 29 H 1.09001 * 109.46298 * 305.85921 * 14 13 3 30 30 H 1.09003 * 109.50265 * 180.87992 * 15 14 13 31 31 H 1.08998 * 109.50199 * 60.76405 * 15 14 13 32 32 H 1.09004 * 109.52194 * 297.68794 * 16 15 14 33 33 H 1.09002 * 109.47076 * 55.00069 * 17 16 15 34 34 H 1.09001 * 109.47181 * 294.99618 * 17 16 15 35 35 H 1.08998 * 109.47597 * 59.99984 * 19 18 17 36 36 H 1.09005 * 109.46730 * 299.99579 * 19 18 17 37 37 H 1.08998 * 109.46882 * 179.97438 * 19 18 17 38 38 H 1.08999 * 109.50471 * 62.28707 * 20 16 15 39 39 H 1.09001 * 109.50474 * 182.40584 * 20 16 15 40 40 H 1.08998 * 109.46596 * 294.17646 * 21 13 3 41 41 H 1.09001 * 109.46262 * 54.14401 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6169 1.9776 0.8501 5 6 3.5435 1.4437 0.1036 6 1 4.1383 1.8920 -0.6786 7 6 4.1596 0.8727 1.1968 8 7 3.4354 0.3264 2.1490 9 14 6.0232 0.8749 1.3255 10 1 6.5177 2.2751 1.3258 11 1 6.4331 0.2043 2.5855 12 1 6.6002 0.1463 0.1673 13 7 1.6346 2.1052 -1.2468 14 6 1.8998 3.5483 -1.1861 15 6 1.3344 4.2252 -2.4367 16 6 1.9903 3.6186 -3.6803 17 6 1.3852 4.2486 -4.9363 18 8 2.0772 3.7685 -6.0907 19 6 1.5879 4.2988 -7.3242 20 6 1.7403 2.1081 -3.6941 21 6 2.2939 1.4925 -2.4070 22 1 -0.3632 -1.0277 0.0005 23 1 -0.3632 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 3.8689 -0.0757 2.9179 28 1 2.9753 3.7181 -1.1360 29 1 1.4243 3.9679 -0.2996 30 1 1.5451 5.2940 -2.3988 31 1 0.2568 4.0675 -2.4801 32 1 3.0630 3.8110 -3.6569 33 1 1.4801 5.3330 -4.8807 34 1 0.3313 3.9791 -5.0063 35 1 1.6873 5.3842 -7.3179 36 1 0.5381 4.0308 -7.4438 37 1 2.1652 3.8862 -8.1515 38 1 0.6690 1.9171 -3.7573 39 1 2.2411 1.6642 -4.5545 40 1 3.3676 1.6718 -2.3512 41 1 2.1048 0.4190 -2.4072 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070081036.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:00:35 Heat of formation + Delta-G solvation = -78.169564 kcal Electronic energy + Delta-G solvation = -18514.783185 eV Core-core repulsion = 15814.286673 eV Total energy + Delta-G solvation = -2700.496512 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.29882 -38.65625 -36.40333 -33.99366 -32.64828 -31.55975 -29.21517 -27.78410 -26.42167 -24.68938 -24.00773 -22.78911 -21.06531 -20.55504 -18.29577 -17.22334 -17.14377 -16.64091 -16.33698 -15.88246 -15.48397 -15.06744 -14.86990 -14.50822 -14.21530 -14.09383 -13.40876 -13.21150 -13.10668 -12.91960 -12.88223 -12.59304 -12.47268 -12.26857 -12.08079 -11.94309 -11.61838 -11.53136 -11.48694 -11.19044 -10.96059 -10.81363 -10.51781 -10.40437 -8.87987 -8.01766 -6.24643 1.36553 1.37496 1.44764 2.39808 2.90699 3.15474 3.46197 3.90654 3.97249 4.12512 4.43985 4.48173 4.52303 4.55804 4.58643 4.65457 4.68999 4.74943 4.77510 4.83489 4.89145 4.93474 5.03902 5.07601 5.09923 5.17905 5.26769 5.33566 5.35877 5.44780 5.53691 5.55796 5.67152 5.81983 6.09659 6.23377 6.33373 6.42619 6.74224 6.97523 7.46009 8.92319 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.026841 B = 0.006382 C = 0.005696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.920379 B = 4386.466053 C = 4914.181452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.106 4.106 3 C 0.219 3.781 4 H 0.004 0.996 5 C -0.551 4.551 6 H 0.046 0.954 7 C 0.023 3.977 8 N -0.910 5.910 9 Si 0.943 3.057 10 H -0.276 1.276 11 H -0.281 1.281 12 H -0.276 1.276 13 N -0.528 5.528 14 C 0.062 3.938 15 C -0.095 4.095 16 C -0.083 4.083 17 C 0.074 3.926 18 O -0.418 6.418 19 C 0.026 3.974 20 C -0.095 4.095 21 C 0.066 3.934 22 H 0.044 0.956 23 H 0.033 0.967 24 H 0.058 0.942 25 H 0.029 0.971 26 H 0.061 0.939 27 H 0.261 0.739 28 H 0.009 0.991 29 H 0.058 0.942 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.050 0.950 36 H 0.050 0.950 37 H 0.092 0.908 38 H 0.069 0.931 39 H 0.064 0.936 40 H 0.009 0.991 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.645 7.195 -13.752 16.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.144 4.144 3 C 0.111 3.889 4 H 0.022 0.978 5 C -0.591 4.591 6 H 0.064 0.936 7 C -0.177 4.177 8 N -0.549 5.549 9 Si 0.769 3.231 10 H -0.202 1.202 11 H -0.206 1.206 12 H -0.201 1.201 13 N -0.252 5.252 14 C -0.066 4.066 15 C -0.133 4.133 16 C -0.102 4.102 17 C -0.002 4.002 18 O -0.337 6.337 19 C -0.070 4.070 20 C -0.132 4.132 21 C -0.062 4.062 22 H 0.064 0.936 23 H 0.052 0.948 24 H 0.077 0.923 25 H 0.048 0.952 26 H 0.080 0.920 27 H 0.071 0.929 28 H 0.028 0.972 29 H 0.076 0.924 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.111 0.889 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.027 0.973 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.994 6.912 -13.616 16.405 hybrid contribution 2.002 0.044 0.684 2.116 sum -3.993 6.956 -12.932 15.217 Atomic orbital electron populations 1.21557 0.96147 0.99757 1.00739 1.21437 0.94625 0.98204 1.00160 1.19050 0.91551 0.91593 0.86678 0.97803 1.21954 0.94234 1.37461 1.05411 0.93601 1.25574 1.01652 0.94971 0.95494 1.69986 1.36286 1.38713 1.09933 0.85852 0.81723 0.78141 0.77361 1.20154 1.20649 1.20138 1.62375 1.56924 1.02492 1.03412 1.21878 0.97368 0.89265 0.98103 1.21498 1.00771 0.99106 0.91884 1.21128 0.99771 0.95662 0.93661 1.22555 0.95619 0.97707 0.84303 1.87863 1.60248 1.70234 1.15387 1.22899 0.99750 0.98736 0.85619 1.21505 1.01305 0.94778 0.95649 1.21873 0.95190 0.98385 0.90755 0.93644 0.94808 0.92324 0.95216 0.92045 0.92926 0.97228 0.92379 0.90061 0.90410 0.92661 0.92064 0.92144 0.93166 0.93155 0.88918 0.91193 0.91693 0.97288 0.92428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.04 9.79 71.98 0.70 -4.34 16 2 C -0.11 -5.14 5.14 30.59 0.16 -4.98 16 3 C 0.22 11.09 1.72 44.17 0.08 11.16 16 4 H 0.00 0.23 7.99 -2.39 -0.02 0.21 16 5 C -0.55 -30.46 7.23 25.60 0.19 -30.27 16 6 H 0.05 2.58 5.84 -2.91 -0.02 2.56 16 7 C 0.02 1.28 5.29 84.65 0.45 1.73 16 8 N -0.91 -52.51 11.29 21.45 0.24 -52.27 16 9 Si 0.94 44.38 29.54 68.60 2.03 46.40 16 10 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 11 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 12 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 13 N -0.53 -22.44 4.02 -875.51 -3.52 -25.96 16 14 C 0.06 2.40 5.19 86.32 0.45 2.85 16 15 C -0.09 -2.69 5.38 30.65 0.16 -2.53 16 16 C -0.08 -2.39 2.49 -10.72 -0.03 -2.42 16 17 C 0.07 1.69 5.32 71.98 0.38 2.07 16 18 O -0.42 -10.44 10.30 -148.98 -1.53 -11.98 16 19 C 0.03 0.43 11.01 113.37 1.25 1.68 16 20 C -0.09 -3.01 5.25 30.65 0.16 -2.85 16 21 C 0.07 2.67 4.78 86.33 0.41 3.09 16 22 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 23 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 24 H 0.06 2.24 7.73 -2.39 -0.02 2.22 16 25 H 0.03 1.42 6.24 -2.39 -0.01 1.41 16 26 H 0.06 3.36 5.97 -2.39 -0.01 3.35 16 27 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 28 H 0.01 0.41 7.28 -2.39 -0.02 0.39 16 29 H 0.06 2.26 8.02 -2.39 -0.02 2.24 16 30 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 33 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 37 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.06 2.02 7.91 -2.39 -0.02 2.00 16 40 H 0.01 0.40 6.38 -2.39 -0.02 0.39 16 41 H 0.06 2.42 6.13 -2.39 -0.01 2.40 16 Total: -1.00 -60.90 312.43 2.54 -58.36 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: 0.97 Total: 10.24 kcal Atomic # 6 Polarization: -29.16 SS G_CDS: 4.36 Total: -24.80 kcal Atomic # 7 Polarization: -74.95 SS G_CDS: -3.28 Total: -78.23 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: -1.53 Total: -11.98 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.40 kcal Total: -60.90 2.54 -58.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070081036.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.811 kcal (2) G-P(sol) polarization free energy of solvation -60.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds