Wall clock time and date at job start Sun Mar 29 2020 23:00:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.47024 * 2 1 4 4 H 1.08998 * 109.47189 * 303.21490 * 3 2 1 5 5 C 1.50702 * 109.47142 * 183.20853 * 3 2 1 6 6 H 1.07997 * 120.00074 * 240.00034 * 5 3 2 7 7 C 1.37883 * 119.99573 * 60.00214 * 5 3 2 8 8 N 1.31509 * 119.99990 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99724 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46957 * 0.02562 * 9 7 5 11 11 H 1.48493 * 109.47261 * 120.00000 * 9 7 5 12 12 H 1.48500 * 109.46889 * 240.00161 * 9 7 5 13 13 N 1.46895 * 109.46845 * 63.21013 * 3 2 1 14 14 C 1.46851 * 111.00296 * 66.78958 * 13 3 2 15 15 C 1.53031 * 109.52594 * 185.83931 * 14 13 3 16 16 C 1.53126 * 109.27921 * 300.81923 * 15 14 13 17 17 C 1.52999 * 109.52330 * 177.56061 * 16 15 14 18 18 O 1.42898 * 109.46786 * 174.99804 * 17 16 15 19 19 C 1.42896 * 113.99909 * 179.97438 * 18 17 16 20 20 C 1.53114 * 109.16047 * 57.65264 * 16 15 14 21 21 C 1.46843 * 111.00136 * 190.99955 * 13 3 2 22 22 H 1.09000 * 109.46665 * 184.77595 * 1 2 3 23 23 H 1.08999 * 109.46935 * 304.77530 * 1 2 3 24 24 H 1.08992 * 109.47000 * 64.77736 * 1 2 3 25 25 H 1.09003 * 109.46568 * 240.00195 * 2 1 3 26 26 H 1.09002 * 109.47328 * 120.00443 * 2 1 3 27 27 H 0.96998 * 119.99876 * 180.02562 * 8 7 5 28 28 H 1.08997 * 109.45947 * 65.81802 * 14 13 3 29 29 H 1.08998 * 109.45761 * 305.85604 * 14 13 3 30 30 H 1.08999 * 109.50217 * 180.88316 * 15 14 13 31 31 H 1.08993 * 109.50582 * 60.76113 * 15 14 13 32 32 H 1.09002 * 109.52037 * 297.68640 * 16 15 14 33 33 H 1.09003 * 109.46948 * 55.00432 * 17 16 15 34 34 H 1.08992 * 109.47005 * 295.00060 * 17 16 15 35 35 H 1.08996 * 109.47558 * 60.00246 * 19 18 17 36 36 H 1.09005 * 109.47224 * 299.99956 * 19 18 17 37 37 H 1.09003 * 109.47643 * 180.02562 * 19 18 17 38 38 H 1.09007 * 109.50106 * 62.28814 * 20 16 15 39 39 H 1.08992 * 109.51108 * 182.40325 * 20 16 15 40 40 H 1.09004 * 109.46549 * 294.17969 * 21 13 3 41 41 H 1.09001 * 109.46420 * 54.14157 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6304 1.9727 -0.8597 5 6 3.5449 1.4433 -0.0795 6 1 4.1272 1.8960 0.7094 7 6 4.1785 0.8660 -1.1596 8 7 3.4694 0.3144 -2.1200 9 14 6.0438 0.8676 -1.2586 10 1 6.6025 1.5450 -0.0609 11 1 6.5379 -0.5317 -1.3107 12 1 6.4739 1.5904 -2.4824 13 7 1.6147 2.1122 1.2363 14 6 2.2764 1.5240 2.4079 15 6 1.7035 2.1445 3.6841 16 6 1.9278 3.6590 3.6547 17 6 1.3033 4.2926 4.8995 18 8 1.6130 5.6873 4.9303 19 6 1.0734 6.3776 6.0590 20 6 1.2703 4.2401 2.4000 21 6 1.8556 3.5588 1.1610 22 1 -0.3632 -1.0241 0.0856 23 1 -0.3633 0.5861 0.8441 24 1 -0.3633 0.4379 -0.9296 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 3.9151 -0.0921 -2.8797 28 1 3.3472 1.7211 2.3572 29 1 2.1056 0.4476 2.4191 30 1 2.2058 1.7191 4.5528 31 1 0.6353 1.9359 3.7423 32 1 2.9973 3.8685 3.6369 33 1 1.7039 3.8116 5.7918 34 1 0.2217 4.1611 4.8703 35 1 1.4687 5.9401 6.9757 36 1 -0.0131 6.2895 6.0535 37 1 1.3524 7.4302 6.0087 38 1 0.1951 4.0645 2.4380 39 1 1.4629 5.3118 2.3512 40 1 2.9285 3.7464 1.1161 41 1 1.3793 3.9602 0.2665 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070081037.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:00:37 Heat of formation + Delta-G solvation = -61.355748 kcal Electronic energy + Delta-G solvation = -18502.689680 eV Core-core repulsion = 15802.922270 eV Total energy + Delta-G solvation = -2699.767411 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.87292 -37.47660 -34.78072 -32.08881 -30.99340 -30.05284 -27.80835 -26.35933 -25.14176 -22.95910 -22.41910 -21.39820 -19.43820 -18.87428 -16.48295 -16.06967 -15.70793 -15.49258 -14.87435 -14.23915 -13.97908 -13.51831 -13.32078 -12.92329 -12.76395 -12.52184 -12.02136 -11.79715 -11.57159 -11.43119 -11.14706 -11.07789 -10.82659 -10.64716 -10.46786 -10.30665 -10.15786 -9.95045 -9.70045 -9.60053 -9.51435 -9.20418 -8.99677 -8.32777 -7.03028 -5.95042 -4.08149 3.27585 3.36297 3.39847 3.81243 4.42492 4.99541 5.09011 5.16846 5.25692 5.29274 5.30730 5.38553 5.53809 5.60076 5.71309 5.90176 5.98850 6.15771 6.23411 6.34652 6.38747 6.49911 6.53305 6.56248 6.64694 6.71421 6.80304 6.85735 6.98766 7.17391 7.21124 7.24022 7.43259 7.66609 7.81417 8.05197 8.21997 8.40099 8.54927 9.03036 9.59343 11.03928 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.027463 B = 0.006341 C = 0.005590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.297074 B = 4414.352612 C = 5008.131983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.110 4.110 3 C 0.213 3.787 4 H 0.037 0.963 5 C -0.541 4.541 6 H 0.057 0.943 7 C 0.068 3.932 8 N -0.886 5.886 9 Si 0.885 3.115 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.284 1.284 13 N -0.534 5.534 14 C 0.064 3.936 15 C -0.109 4.109 16 C -0.085 4.085 17 C 0.068 3.932 18 O -0.389 6.389 19 C 0.032 3.968 20 C -0.104 4.104 21 C 0.063 3.937 22 H 0.024 0.976 23 H 0.050 0.950 24 H 0.037 0.963 25 H 0.091 0.909 26 H 0.032 0.968 27 H 0.260 0.740 28 H 0.038 0.962 29 H 0.070 0.930 30 H 0.055 0.945 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.043 0.957 34 H 0.047 0.953 35 H 0.037 0.963 36 H 0.038 0.962 37 H 0.082 0.918 38 H 0.060 0.940 39 H 0.061 0.939 40 H 0.033 0.967 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.034 6.002 12.164 14.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.148 4.148 3 C 0.106 3.894 4 H 0.055 0.945 5 C -0.580 4.580 6 H 0.075 0.925 7 C -0.134 4.134 8 N -0.525 5.525 9 Si 0.714 3.286 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.211 1.211 13 N -0.258 5.258 14 C -0.065 4.065 15 C -0.147 4.147 16 C -0.103 4.103 17 C -0.009 4.009 18 O -0.308 6.308 19 C -0.065 4.065 20 C -0.142 4.142 21 C -0.065 4.065 22 H 0.043 0.957 23 H 0.069 0.931 24 H 0.056 0.944 25 H 0.109 0.891 26 H 0.050 0.950 27 H 0.070 0.930 28 H 0.056 0.944 29 H 0.088 0.912 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.100 0.900 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.051 0.949 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.415 5.921 11.888 14.343 hybrid contribution 1.822 -0.025 0.034 1.823 sum -3.592 5.896 11.922 13.777 Atomic orbital electron populations 1.21720 0.98933 0.98408 1.00586 1.21582 0.92164 0.99219 1.01824 1.19261 0.92742 0.91092 0.86261 0.94536 1.21804 0.92840 1.37287 1.06034 0.92486 1.24907 0.97808 0.95125 0.95601 1.69885 1.34767 1.38035 1.09779 0.86646 0.86412 0.77667 0.77919 1.19981 1.21042 1.21057 1.62384 1.57173 1.01950 1.04328 1.21854 0.96649 0.98741 0.89218 1.21630 1.01436 0.93381 0.98254 1.21190 1.00480 0.95195 0.93476 1.22674 0.98858 0.81014 0.98322 1.87907 1.76178 1.21601 1.45140 1.22693 0.97627 0.97406 0.88751 1.21583 0.99849 0.98828 0.93932 1.21844 0.98602 0.89762 0.96337 0.95729 0.93070 0.94408 0.89121 0.94964 0.93022 0.94423 0.91172 0.92670 0.91776 0.90956 0.93825 0.93442 0.94447 0.94326 0.89952 0.92139 0.92055 0.94860 0.91983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 9.85 37.16 0.37 -2.48 16 2 C -0.11 -2.60 5.14 -26.73 -0.14 -2.74 16 3 C 0.21 5.24 1.72 -68.86 -0.12 5.13 16 4 H 0.04 1.01 7.97 -51.93 -0.41 0.59 16 5 C -0.54 -14.46 7.24 -34.44 -0.25 -14.71 16 6 H 0.06 1.55 5.84 -52.49 -0.31 1.24 16 7 C 0.07 1.85 5.30 -17.82 -0.09 1.75 16 8 N -0.89 -24.97 11.30 55.43 0.63 -24.35 16 9 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 13 N -0.53 -11.25 3.89 -228.08 -0.89 -12.14 16 14 C 0.06 1.24 4.77 -3.83 -0.02 1.23 16 15 C -0.11 -1.69 5.38 -26.65 -0.14 -1.84 16 16 C -0.08 -1.29 2.49 -90.50 -0.23 -1.52 16 17 C 0.07 0.88 5.32 37.16 0.20 1.08 16 18 O -0.39 -5.35 10.30 -35.23 -0.36 -5.71 16 19 C 0.03 0.31 11.01 101.05 1.11 1.42 16 20 C -0.10 -1.70 5.25 -26.65 -0.14 -1.84 16 21 C 0.06 1.25 5.20 -3.83 -0.02 1.23 16 22 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 23 H 0.05 1.01 7.56 -51.93 -0.39 0.62 16 24 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.09 2.41 5.99 -51.93 -0.31 2.10 16 26 H 0.03 0.75 6.33 -51.93 -0.33 0.42 16 27 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 28 H 0.04 0.81 6.33 -51.93 -0.33 0.48 16 29 H 0.07 1.41 6.20 -51.93 -0.32 1.08 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.97 8.14 -51.92 -0.42 0.55 16 39 H 0.06 0.98 7.90 -51.93 -0.41 0.56 16 40 H 0.03 0.72 7.36 -51.93 -0.38 0.33 16 41 H 0.06 1.24 8.00 -51.93 -0.42 0.83 16 LS Contribution 312.38 15.07 4.71 4.71 Total: -1.00 -27.93 312.38 -7.81 -35.74 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -7.40 Total: -1.19 kcal Atomic # 6 Polarization: -13.82 SS G_CDS: 0.53 Total: -13.30 kcal Atomic # 7 Polarization: -36.23 SS G_CDS: -0.26 Total: -36.49 kcal Atomic # 8 Polarization: -5.35 SS G_CDS: -0.36 Total: -5.71 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -27.93 -7.81 -35.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070081037.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.620 kcal (2) G-P(sol) polarization free energy of solvation -27.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds