Wall clock time and date at job start Sun Mar 29 2020 23:00:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.47024 * 2 1 4 4 H 1.08998 * 109.47189 * 303.21490 * 3 2 1 5 5 C 1.50702 * 109.47142 * 183.20853 * 3 2 1 6 6 H 1.07997 * 120.00074 * 240.00034 * 5 3 2 7 7 C 1.37883 * 119.99573 * 60.00214 * 5 3 2 8 8 N 1.31509 * 119.99990 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99724 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46957 * 0.02562 * 9 7 5 11 11 H 1.48493 * 109.47261 * 120.00000 * 9 7 5 12 12 H 1.48500 * 109.46889 * 240.00161 * 9 7 5 13 13 N 1.46895 * 109.46845 * 63.21013 * 3 2 1 14 14 C 1.46851 * 111.00296 * 66.78958 * 13 3 2 15 15 C 1.53031 * 109.52594 * 185.83931 * 14 13 3 16 16 C 1.53126 * 109.27921 * 300.81923 * 15 14 13 17 17 C 1.52999 * 109.52330 * 177.56061 * 16 15 14 18 18 O 1.42898 * 109.46786 * 174.99804 * 17 16 15 19 19 C 1.42896 * 113.99909 * 179.97438 * 18 17 16 20 20 C 1.53114 * 109.16047 * 57.65264 * 16 15 14 21 21 C 1.46843 * 111.00136 * 190.99955 * 13 3 2 22 22 H 1.09000 * 109.46665 * 184.77595 * 1 2 3 23 23 H 1.08999 * 109.46935 * 304.77530 * 1 2 3 24 24 H 1.08992 * 109.47000 * 64.77736 * 1 2 3 25 25 H 1.09003 * 109.46568 * 240.00195 * 2 1 3 26 26 H 1.09002 * 109.47328 * 120.00443 * 2 1 3 27 27 H 0.96998 * 119.99876 * 180.02562 * 8 7 5 28 28 H 1.08997 * 109.45947 * 65.81802 * 14 13 3 29 29 H 1.08998 * 109.45761 * 305.85604 * 14 13 3 30 30 H 1.08999 * 109.50217 * 180.88316 * 15 14 13 31 31 H 1.08993 * 109.50582 * 60.76113 * 15 14 13 32 32 H 1.09002 * 109.52037 * 297.68640 * 16 15 14 33 33 H 1.09003 * 109.46948 * 55.00432 * 17 16 15 34 34 H 1.08992 * 109.47005 * 295.00060 * 17 16 15 35 35 H 1.08996 * 109.47558 * 60.00246 * 19 18 17 36 36 H 1.09005 * 109.47224 * 299.99956 * 19 18 17 37 37 H 1.09003 * 109.47643 * 180.02562 * 19 18 17 38 38 H 1.09007 * 109.50106 * 62.28814 * 20 16 15 39 39 H 1.08992 * 109.51108 * 182.40325 * 20 16 15 40 40 H 1.09004 * 109.46549 * 294.17969 * 21 13 3 41 41 H 1.09001 * 109.46420 * 54.14157 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6304 1.9727 -0.8597 5 6 3.5449 1.4433 -0.0795 6 1 4.1272 1.8960 0.7094 7 6 4.1785 0.8660 -1.1596 8 7 3.4694 0.3144 -2.1200 9 14 6.0438 0.8676 -1.2586 10 1 6.6025 1.5450 -0.0609 11 1 6.5379 -0.5317 -1.3107 12 1 6.4739 1.5904 -2.4824 13 7 1.6147 2.1122 1.2363 14 6 2.2764 1.5240 2.4079 15 6 1.7035 2.1445 3.6841 16 6 1.9278 3.6590 3.6547 17 6 1.3033 4.2926 4.8995 18 8 1.6130 5.6873 4.9303 19 6 1.0734 6.3776 6.0590 20 6 1.2703 4.2401 2.4000 21 6 1.8556 3.5588 1.1610 22 1 -0.3632 -1.0241 0.0856 23 1 -0.3633 0.5861 0.8441 24 1 -0.3633 0.4379 -0.9296 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 3.9151 -0.0921 -2.8797 28 1 3.3472 1.7211 2.3572 29 1 2.1056 0.4476 2.4191 30 1 2.2058 1.7191 4.5528 31 1 0.6353 1.9359 3.7423 32 1 2.9973 3.8685 3.6369 33 1 1.7039 3.8116 5.7918 34 1 0.2217 4.1611 4.8703 35 1 1.4687 5.9401 6.9757 36 1 -0.0131 6.2895 6.0535 37 1 1.3524 7.4302 6.0087 38 1 0.1951 4.0645 2.4380 39 1 1.4629 5.3118 2.3512 40 1 2.9285 3.7464 1.1161 41 1 1.3793 3.9602 0.2665 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070081037.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:00:37 Heat of formation + Delta-G solvation = -78.088652 kcal Electronic energy + Delta-G solvation = -18503.415274 eV Core-core repulsion = 15802.922270 eV Total energy + Delta-G solvation = -2700.493004 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.29914 -38.65951 -36.39589 -33.99345 -32.67378 -31.53383 -29.21472 -27.77414 -26.45807 -24.73111 -23.88307 -22.86250 -21.05499 -20.55880 -18.30345 -17.23134 -17.09997 -16.67640 -16.33746 -15.84783 -15.50620 -15.08214 -14.83017 -14.50639 -14.36912 -13.96713 -13.46455 -13.19049 -13.08538 -12.92206 -12.83891 -12.70113 -12.40651 -12.21311 -12.09815 -11.93299 -11.70123 -11.52761 -11.46058 -11.15100 -10.95629 -10.81797 -10.51703 -10.41734 -8.88058 -8.02179 -6.24930 1.34413 1.37524 1.47060 2.39623 2.90764 3.15244 3.46034 3.89441 3.97499 4.13348 4.43021 4.48012 4.52751 4.55062 4.60410 4.63885 4.69068 4.75790 4.78725 4.84577 4.89130 4.94285 5.02309 5.07437 5.09402 5.18260 5.28004 5.30871 5.37383 5.45721 5.53854 5.56457 5.67666 5.82449 6.10777 6.23197 6.33059 6.42522 6.73936 6.97800 7.45892 8.92356 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.027463 B = 0.006341 C = 0.005590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.297074 B = 4414.352612 C = 5008.131983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.104 4.104 3 C 0.217 3.783 4 H 0.000 1.000 5 C -0.550 4.550 6 H 0.047 0.953 7 C 0.022 3.978 8 N -0.911 5.911 9 Si 0.944 3.056 10 H -0.275 1.275 11 H -0.278 1.278 12 H -0.281 1.281 13 N -0.528 5.528 14 C 0.065 3.935 15 C -0.098 4.098 16 C -0.083 4.083 17 C 0.074 3.926 18 O -0.417 6.417 19 C 0.026 3.974 20 C -0.092 4.092 21 C 0.064 3.936 22 H 0.046 0.954 23 H 0.060 0.940 24 H 0.030 0.970 25 H 0.060 0.940 26 H 0.032 0.968 27 H 0.261 0.739 28 H 0.011 0.989 29 H 0.064 0.936 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.050 0.950 36 H 0.050 0.950 37 H 0.093 0.907 38 H 0.070 0.930 39 H 0.066 0.934 40 H 0.007 0.993 41 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.680 6.307 14.270 16.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.142 4.142 3 C 0.110 3.890 4 H 0.018 0.982 5 C -0.589 4.589 6 H 0.065 0.935 7 C -0.178 4.178 8 N -0.550 5.550 9 Si 0.771 3.229 10 H -0.200 1.200 11 H -0.204 1.204 12 H -0.207 1.207 13 N -0.251 5.251 14 C -0.064 4.064 15 C -0.136 4.136 16 C -0.102 4.102 17 C -0.002 4.002 18 O -0.337 6.337 19 C -0.070 4.070 20 C -0.130 4.130 21 C -0.065 4.065 22 H 0.065 0.935 23 H 0.079 0.921 24 H 0.049 0.951 25 H 0.079 0.921 26 H 0.051 0.949 27 H 0.070 0.930 28 H 0.030 0.970 29 H 0.082 0.918 30 H 0.098 0.902 31 H 0.096 0.904 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.111 0.889 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.025 0.975 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.067 6.235 14.012 16.493 hybrid contribution 2.026 -0.077 -0.624 2.122 sum -4.041 6.158 13.388 15.281 Atomic orbital electron populations 1.21577 0.96195 0.99990 1.00625 1.21415 0.94556 0.97988 1.00254 1.19054 0.91508 0.91653 0.86774 0.98168 1.22013 0.94145 1.36942 1.05772 0.93486 1.25590 1.01767 0.95007 0.95427 1.70005 1.36217 1.38609 1.10173 0.85720 0.81677 0.77779 0.77726 1.19967 1.20382 1.20737 1.62369 1.56830 1.02435 1.03513 1.21889 0.95303 0.98722 0.90465 1.21536 1.02149 0.93325 0.96544 1.21128 0.99584 0.95208 0.94287 1.22553 0.99361 0.80997 0.97270 1.87860 1.76931 1.21924 1.47004 1.22899 0.98360 0.97737 0.88014 1.21469 1.00151 0.98682 0.92652 1.21872 0.97156 0.89347 0.98096 0.93478 0.92117 0.95052 0.92141 0.94943 0.92959 0.97038 0.91811 0.90207 0.90447 0.92688 0.92101 0.92118 0.93182 0.93156 0.88898 0.91105 0.91539 0.97483 0.93016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.07 9.85 71.98 0.71 -4.36 16 2 C -0.10 -4.98 5.14 30.60 0.16 -4.82 16 3 C 0.22 11.04 1.72 44.17 0.08 11.11 16 4 H 0.00 0.02 7.97 -2.39 -0.02 0.00 16 5 C -0.55 -30.31 7.24 25.60 0.19 -30.12 16 6 H 0.05 2.64 5.84 -2.91 -0.02 2.62 16 7 C 0.02 1.22 5.30 84.66 0.45 1.66 16 8 N -0.91 -52.57 11.30 21.45 0.24 -52.33 16 9 Si 0.94 44.36 29.54 68.60 2.03 46.38 16 10 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 11 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 12 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 13 N -0.53 -22.41 3.89 -875.52 -3.41 -25.82 16 14 C 0.06 2.49 4.77 86.32 0.41 2.90 16 15 C -0.10 -2.80 5.38 30.65 0.16 -2.64 16 16 C -0.08 -2.39 2.49 -10.71 -0.03 -2.41 16 17 C 0.07 1.69 5.32 71.98 0.38 2.08 16 18 O -0.42 -10.39 10.30 -148.98 -1.53 -11.93 16 19 C 0.03 0.43 11.01 113.37 1.25 1.68 16 20 C -0.09 -2.89 5.25 30.65 0.16 -2.73 16 21 C 0.06 2.57 5.20 86.33 0.45 3.02 16 22 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 23 H 0.06 2.30 7.56 -2.39 -0.02 2.28 16 24 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.06 3.29 5.99 -2.39 -0.01 3.28 16 26 H 0.03 1.52 6.33 -2.39 -0.02 1.50 16 27 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 28 H 0.01 0.50 6.33 -2.39 -0.02 0.48 16 29 H 0.06 2.52 6.20 -2.39 -0.01 2.51 16 30 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.06 1.23 8.14 -2.39 -0.02 1.22 16 35 H 0.05 0.69 8.14 -2.39 -0.02 0.68 16 36 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 37 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 39 H 0.07 2.04 7.90 -2.39 -0.02 2.02 16 40 H 0.01 0.31 7.36 -2.39 -0.02 0.29 16 41 H 0.05 2.14 8.00 -2.39 -0.02 2.12 16 Total: -1.00 -61.01 312.38 2.66 -58.35 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: 0.97 Total: 9.98 kcal Atomic # 6 Polarization: -29.00 SS G_CDS: 4.37 Total: -24.64 kcal Atomic # 7 Polarization: -74.98 SS G_CDS: -3.16 Total: -78.15 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: -1.53 Total: -11.93 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.38 kcal Total: -61.01 2.66 -58.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070081037.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.737 kcal (2) G-P(sol) polarization free energy of solvation -61.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds