Wall clock time and date at job start Sun Mar 29 2020 22:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46777 * 2 1 4 4 C 1.53001 * 109.47157 * 119.99717 * 2 1 3 5 5 C 1.50697 * 109.46995 * 300.00500 * 4 2 1 6 6 H 1.07991 * 120.00449 * 359.72153 * 5 4 2 7 7 C 1.37885 * 119.99686 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99913 * 359.72095 * 7 5 4 9 9 Si 1.86798 * 119.99766 * 179.72528 * 7 5 4 10 10 H 1.48498 * 109.47416 * 59.99812 * 9 7 5 11 11 H 1.48508 * 109.46609 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.46903 * 299.99397 * 9 7 5 13 13 C 1.52994 * 109.47246 * 240.00115 * 2 1 3 14 14 N 1.46904 * 109.47264 * 59.99817 * 13 2 1 15 15 C 1.46907 * 111.00002 * 180.02562 * 14 13 2 16 16 C 1.52998 * 109.46958 * 180.02562 * 15 14 13 17 17 H 1.09001 * 109.82074 * 305.70017 * 16 15 14 18 18 C 1.54379 * 109.83122 * 184.81494 * 16 15 14 19 19 C 1.55450 * 102.18713 * 219.18141 * 18 16 15 20 20 C 1.54953 * 100.98812 * 34.03966 * 19 18 16 21 21 O 1.43240 * 109.83088 * 66.58349 * 16 15 14 22 22 H 1.08994 * 109.47273 * 299.99833 * 1 2 3 23 23 H 1.08996 * 109.47275 * 60.00217 * 1 2 3 24 24 H 1.09006 * 109.46676 * 179.97438 * 1 2 3 25 25 H 1.09007 * 109.47067 * 180.02562 * 3 2 1 26 26 H 1.08996 * 109.47498 * 299.99650 * 3 2 1 27 27 H 1.09003 * 109.47209 * 59.99813 * 3 2 1 28 28 H 1.08998 * 109.47065 * 179.97438 * 4 2 1 29 29 H 1.09001 * 109.46892 * 60.00190 * 4 2 1 30 30 H 0.97000 * 119.99651 * 180.02562 * 8 7 5 31 31 H 1.08998 * 109.47353 * 179.97438 * 13 2 1 32 32 H 1.09001 * 109.47005 * 299.99934 * 13 2 1 33 33 H 1.00901 * 110.99757 * 56.05037 * 14 13 2 34 34 H 1.09002 * 109.46516 * 299.99611 * 15 14 13 35 35 H 1.08991 * 109.47053 * 59.99659 * 15 14 13 36 36 H 1.09005 * 110.84405 * 337.31423 * 18 16 15 37 37 H 1.08990 * 110.85272 * 100.93408 * 18 16 15 38 38 H 1.08995 * 111.05908 * 276.12457 * 19 18 16 39 39 H 1.09000 * 111.14707 * 151.98509 * 19 18 16 40 40 H 1.09002 * 110.30364 * 204.69636 * 20 19 18 41 41 H 1.08993 * 110.31356 * 82.52264 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 1.5376 -0.0108 2.4797 6 1 0.9204 0.8698 2.3806 7 6 1.8703 -0.4822 3.7320 8 7 2.6215 -1.5549 3.8527 9 14 1.2539 0.4029 5.2572 10 1 -0.2311 0.4098 5.2593 11 1 1.7479 -0.2980 6.4697 12 1 1.7555 1.8006 5.2550 13 6 2.0401 -0.7212 -1.2492 14 7 1.5504 -0.0287 -2.4487 15 6 2.0210 -0.6952 -3.6704 16 6 1.4924 0.0534 -4.8956 17 1 0.4081 0.1453 -4.8331 18 6 1.8803 -0.7074 -6.1817 19 6 2.2422 0.4519 -7.1521 20 6 2.8594 1.4783 -6.1690 21 8 2.0873 1.3546 -4.9640 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 3.1300 1.4426 -0.0005 26 1 1.6767 1.9564 -0.8900 27 1 1.6766 1.9564 0.8900 28 1 3.1300 -0.7216 1.2490 29 1 1.6767 -1.7489 1.2493 30 1 2.8552 -1.8867 4.7337 31 1 3.1300 -0.7208 -1.2494 32 1 1.6767 -1.7489 -1.2492 33 1 1.8199 0.9436 -2.4402 34 1 3.1108 -0.6953 -3.6873 35 1 1.6572 -1.7225 -3.6869 36 1 2.7432 -1.3501 -6.0068 37 1 1.0365 -1.2836 -6.5610 38 1 1.3498 0.8545 -7.6313 39 1 2.9730 0.1300 -7.8940 40 1 2.7727 2.4874 -6.5719 41 1 3.9043 1.2358 -5.9754 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078052204.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:49 Heat of formation + Delta-G solvation = -90.534746 kcal Electronic energy + Delta-G solvation = -17814.227629 eV Core-core repulsion = 15113.194922 eV Total energy + Delta-G solvation = -2701.032707 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.48160 -39.03789 -35.77123 -34.20396 -33.02942 -30.87103 -28.92285 -27.90538 -27.09293 -25.53082 -23.88132 -22.41746 -21.87739 -19.51929 -18.33297 -17.98472 -16.96612 -16.67540 -16.41150 -15.80795 -15.44649 -15.06334 -14.74506 -14.34373 -14.19868 -13.97628 -13.85526 -13.29988 -13.15219 -12.74063 -12.72855 -12.61027 -12.42710 -12.26179 -12.18690 -12.06382 -12.00506 -11.85091 -11.67072 -11.38661 -10.86818 -10.77164 -10.49733 -10.42247 -9.30101 -8.13625 -6.20888 1.41201 1.43883 1.51158 2.44350 2.90522 3.19981 3.30290 3.62720 3.96329 4.01483 4.12251 4.20243 4.27677 4.30547 4.38499 4.50573 4.64999 4.71204 4.79320 4.81949 4.85577 4.93578 4.95475 5.00986 5.07405 5.09886 5.19879 5.21057 5.31861 5.50540 5.52815 5.57380 5.65217 5.86287 5.92291 6.05529 6.19040 6.37421 6.52100 6.93672 7.46293 8.98686 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.058956 B = 0.004071 C = 0.003999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 474.820000 B = 6876.674404 C = 7000.142723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.056 4.056 3 C -0.121 4.121 4 C 0.041 3.959 5 C -0.516 4.516 6 H 0.066 0.934 7 C -0.004 4.004 8 N -0.938 5.938 9 Si 0.958 3.042 10 H -0.268 1.268 11 H -0.287 1.287 12 H -0.268 1.268 13 C 0.082 3.918 14 N -0.682 5.682 15 C 0.049 3.951 16 C 0.082 3.918 17 H 0.084 0.916 18 C -0.146 4.146 19 C -0.148 4.148 20 C 0.039 3.961 21 O -0.404 6.404 22 H 0.039 0.961 23 H 0.065 0.935 24 H 0.032 0.968 25 H 0.034 0.966 26 H 0.063 0.937 27 H 0.048 0.952 28 H -0.018 1.018 29 H -0.014 1.014 30 H 0.260 0.740 31 H 0.013 0.987 32 H 0.059 0.941 33 H 0.344 0.656 34 H 0.024 0.976 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.098 0.902 38 H 0.084 0.916 39 H 0.100 0.900 40 H 0.093 0.907 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.227 3.766 -21.942 22.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.057 4.057 3 C -0.179 4.179 4 C 0.003 3.997 5 C -0.554 4.554 6 H 0.084 0.916 7 C -0.201 4.201 8 N -0.580 5.580 9 Si 0.783 3.217 10 H -0.192 1.192 11 H -0.213 1.213 12 H -0.193 1.193 13 C -0.048 4.048 14 N -0.314 5.314 15 C -0.081 4.081 16 C 0.024 3.976 17 H 0.101 0.899 18 C -0.184 4.184 19 C -0.185 4.185 20 C -0.037 4.037 21 O -0.324 6.324 22 H 0.058 0.942 23 H 0.084 0.916 24 H 0.051 0.949 25 H 0.053 0.947 26 H 0.082 0.918 27 H 0.067 0.933 28 H 0.001 0.999 29 H 0.004 0.996 30 H 0.069 0.931 31 H 0.031 0.969 32 H 0.078 0.922 33 H 0.164 0.836 34 H 0.042 0.958 35 H 0.103 0.897 36 H 0.099 0.901 37 H 0.117 0.883 38 H 0.103 0.897 39 H 0.118 0.882 40 H 0.111 0.889 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.778 3.492 -21.667 22.019 hybrid contribution 1.086 0.059 1.178 1.603 sum -0.692 3.551 -20.490 20.807 Atomic orbital electron populations 1.21490 0.94157 1.00188 1.00479 1.20507 0.96448 0.95480 0.93239 1.21675 0.99310 0.95839 1.01052 1.18996 0.93861 0.94161 0.92649 1.21593 1.30508 1.11874 0.91473 0.91620 1.25936 0.95647 0.95918 1.02597 1.70107 1.38975 1.24757 1.24124 0.85610 0.78966 0.78759 0.78387 1.19249 1.21255 1.19311 1.21833 0.95571 0.97634 0.89738 1.60529 1.63211 1.06818 1.00819 1.22426 0.97086 0.98715 0.89854 1.22849 0.97882 0.82639 0.94226 0.89850 1.23178 1.03305 0.98489 0.93458 1.23273 1.02309 0.94909 0.98034 1.23574 0.94977 1.00951 0.84208 1.88432 1.67536 1.33316 1.43143 0.94164 0.91604 0.94872 0.94686 0.91843 0.93255 0.99919 0.99602 0.93127 0.96917 0.92221 0.83611 0.95824 0.89744 0.90113 0.88348 0.89716 0.88151 0.88876 0.92443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.22 8.06 71.98 0.58 -3.64 16 2 C -0.06 -2.37 0.60 -52.18 -0.03 -2.40 16 3 C -0.12 -4.73 7.89 71.98 0.57 -4.16 16 4 C 0.04 2.19 4.04 29.85 0.12 2.31 16 5 C -0.52 -29.30 7.65 25.60 0.20 -29.11 16 6 H 0.07 3.57 5.68 -2.92 -0.02 3.56 16 7 C 0.00 -0.25 5.46 84.66 0.46 0.21 16 8 N -0.94 -58.29 13.29 21.45 0.28 -58.00 16 9 Si 0.96 45.15 29.54 68.60 2.03 47.17 16 10 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 11 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 12 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 13 C 0.08 2.99 4.65 86.30 0.40 3.39 16 14 N -0.68 -20.90 5.71 -513.89 -2.94 -23.84 16 15 C 0.05 1.22 5.25 86.30 0.45 1.67 16 16 C 0.08 1.72 3.76 31.06 0.12 1.84 16 17 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 18 C -0.15 -2.08 6.56 31.91 0.21 -1.87 16 19 C -0.15 -1.77 7.16 32.11 0.23 -1.54 16 20 C 0.04 0.65 7.78 72.65 0.57 1.21 16 21 O -0.40 -9.72 10.61 -148.98 -1.58 -11.31 16 22 H 0.04 1.69 6.62 -2.39 -0.02 1.68 16 23 H 0.07 2.31 7.60 -2.39 -0.02 2.29 16 24 H 0.03 1.32 8.14 -2.38 -0.02 1.31 16 25 H 0.03 1.36 8.14 -2.38 -0.02 1.35 16 26 H 0.06 2.11 6.57 -2.39 -0.02 2.09 16 27 H 0.05 2.05 6.61 -2.39 -0.02 2.03 16 28 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 29 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 30 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 31 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 33 H 0.34 10.74 6.40 -89.69 -0.57 10.17 16 34 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.08 1.11 7.85 -2.38 -0.02 1.09 16 37 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -65.37 318.96 2.07 -63.31 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: 0.40 Total: 14.74 kcal Atomic # 6 Polarization: -35.94 SS G_CDS: 3.87 Total: -32.07 kcal Atomic # 7 Polarization: -79.19 SS G_CDS: -2.65 Total: -81.84 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: -1.58 Total: -11.31 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.17 kcal Total: -65.37 2.07 -63.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078052204.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.229 kcal (2) G-P(sol) polarization free energy of solvation -65.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds