Wall clock time and date at job start Sun Mar 29 2020 22:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.52999 * 109.47592 * 239.99805 * 2 1 3 5 5 C 1.50706 * 109.46957 * 60.00074 * 4 2 1 6 6 H 1.07999 * 119.99816 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00340 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99773 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00296 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.46692 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47025 * 119.99570 * 9 7 5 12 12 H 1.48492 * 109.46854 * 239.99727 * 9 7 5 13 13 C 1.53006 * 109.47164 * 120.00099 * 2 1 3 14 14 N 1.46902 * 109.46626 * 300.00172 * 13 2 1 15 15 C 1.46905 * 110.99800 * 179.97438 * 14 13 2 16 16 C 1.53000 * 109.47234 * 179.97438 * 15 14 13 17 17 H 1.08993 * 109.87052 * 58.99287 * 16 15 14 18 18 C 1.54103 * 109.87600 * 180.02562 * 16 15 14 19 19 C 1.54808 * 104.18796 * 121.45732 * 18 16 15 20 20 C 1.54993 * 102.09459 * 20.87508 * 19 18 16 21 21 O 1.43745 * 109.87779 * 297.83039 * 16 15 14 22 22 H 1.09001 * 109.47375 * 299.99867 * 1 2 3 23 23 H 1.09002 * 109.46777 * 60.00422 * 1 2 3 24 24 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47261 * 179.97438 * 3 2 1 26 26 H 1.09002 * 109.47153 * 299.99992 * 3 2 1 27 27 H 1.09001 * 109.47289 * 60.00075 * 3 2 1 28 28 H 1.08993 * 109.47839 * 179.97438 * 4 2 1 29 29 H 1.09000 * 109.47160 * 300.00333 * 4 2 1 30 30 H 0.97000 * 120.00540 * 180.02562 * 8 7 5 31 31 H 1.09000 * 109.47050 * 59.99996 * 13 2 1 32 32 H 1.09001 * 109.46801 * 180.02562 * 13 2 1 33 33 H 1.00898 * 110.99915 * 303.94815 * 14 13 2 34 34 H 1.08993 * 109.47004 * 300.00108 * 15 14 13 35 35 H 1.09002 * 109.47091 * 59.99861 * 15 14 13 36 36 H 1.09007 * 110.48204 * 240.12899 * 18 16 15 37 37 H 1.08994 * 110.48855 * 2.64339 * 18 16 15 38 38 H 1.09001 * 110.90926 * 139.07415 * 19 18 16 39 39 H 1.09009 * 110.90391 * 262.64260 * 19 18 16 40 40 H 1.08992 * 110.62020 * 81.47923 * 20 19 18 41 41 H 1.09005 * 110.61676 * 204.32396 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.5378 -0.0109 -2.4797 6 1 0.9172 0.8675 -2.3806 7 6 1.8705 -0.4821 -3.7320 8 7 2.6266 -1.5514 -3.8526 9 14 1.2485 0.3988 -5.2572 10 1 0.4238 1.5658 -4.8530 11 1 2.4038 0.8647 -6.0655 12 1 0.4229 -0.5340 -6.0655 13 6 2.0400 -0.7213 1.2493 14 7 1.5502 -0.0288 2.4487 15 6 2.0207 -0.6952 3.6704 16 6 1.4922 0.0534 4.8956 17 1 0.4026 0.0733 4.8760 18 6 1.9810 -0.6380 6.1831 19 6 2.7695 0.4651 6.9302 20 6 2.2016 1.7586 6.2925 21 8 2.0084 1.3948 4.9090 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 3.1300 1.4425 0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 3.1300 -0.7209 -1.2494 29 1 1.6767 -1.7489 -1.2492 30 1 2.8610 -1.8828 -4.7336 31 1 1.6767 -1.7490 1.2492 32 1 3.1300 -0.7209 1.2494 33 1 1.8197 0.9435 2.4402 34 1 1.6570 -1.7225 3.6869 35 1 3.1106 -0.6954 3.6874 36 1 1.1337 -0.9730 6.7815 37 1 2.6322 -1.4780 5.9415 38 1 2.5617 0.4351 7.9998 39 1 3.8392 0.3746 6.7409 40 1 1.2524 2.0296 6.7546 41 1 2.9173 2.5761 6.3806 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078052206.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:51 Heat of formation + Delta-G solvation = -90.096362 kcal Electronic energy + Delta-G solvation = -17819.472340 eV Core-core repulsion = 15118.458643 eV Total energy + Delta-G solvation = -2701.013697 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.45082 -39.03637 -35.78584 -34.21176 -33.01228 -30.85561 -28.91309 -27.90247 -27.04286 -25.46456 -23.87580 -22.61910 -21.87186 -19.51513 -18.33429 -17.57001 -16.96516 -16.73104 -16.52073 -15.73538 -15.55598 -15.25134 -14.63855 -14.47872 -14.21731 -13.95834 -13.77181 -13.32495 -13.03394 -12.79344 -12.68164 -12.59936 -12.43678 -12.27060 -12.20501 -12.06629 -11.95628 -11.82942 -11.53704 -11.38495 -10.86318 -10.75034 -10.56086 -10.50872 -9.29921 -8.13758 -6.20800 1.40646 1.41373 1.54063 2.44254 2.94733 3.20071 3.29424 3.68824 3.94695 4.05374 4.11182 4.18916 4.27181 4.32448 4.38902 4.50923 4.66791 4.71965 4.77571 4.82325 4.85754 4.94683 4.96052 5.05783 5.07783 5.13034 5.20144 5.21347 5.24242 5.50932 5.53311 5.57593 5.65536 5.86622 5.92629 5.99338 6.13629 6.37605 6.52439 6.94169 7.46487 8.98944 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.057808 B = 0.004100 C = 0.004006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.243576 B = 6827.633570 C = 6987.044464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.056 4.056 3 C -0.121 4.121 4 C 0.040 3.960 5 C -0.514 4.514 6 H 0.066 0.934 7 C -0.005 4.005 8 N -0.938 5.938 9 Si 0.958 3.042 10 H -0.261 1.261 11 H -0.282 1.282 12 H -0.281 1.281 13 C 0.081 3.919 14 N -0.682 5.682 15 C 0.060 3.940 16 C 0.079 3.921 17 H 0.072 0.928 18 C -0.148 4.148 19 C -0.150 4.150 20 C 0.038 3.962 21 O -0.401 6.401 22 H 0.065 0.935 23 H 0.039 0.961 24 H 0.032 0.968 25 H 0.034 0.966 26 H 0.048 0.952 27 H 0.062 0.938 28 H -0.017 1.017 29 H -0.014 1.014 30 H 0.260 0.740 31 H 0.060 0.940 32 H 0.013 0.987 33 H 0.345 0.655 34 H 0.087 0.913 35 H 0.026 0.974 36 H 0.092 0.908 37 H 0.081 0.919 38 H 0.100 0.900 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.546 4.178 21.974 22.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.057 4.057 3 C -0.179 4.179 4 C 0.002 3.998 5 C -0.552 4.552 6 H 0.084 0.916 7 C -0.201 4.201 8 N -0.580 5.580 9 Si 0.783 3.217 10 H -0.185 1.185 11 H -0.208 1.208 12 H -0.207 1.207 13 C -0.048 4.048 14 N -0.315 5.315 15 C -0.070 4.070 16 C 0.021 3.979 17 H 0.090 0.910 18 C -0.186 4.186 19 C -0.188 4.188 20 C -0.038 4.038 21 O -0.321 6.321 22 H 0.084 0.916 23 H 0.058 0.942 24 H 0.052 0.948 25 H 0.054 0.946 26 H 0.067 0.933 27 H 0.081 0.919 28 H 0.001 0.999 29 H 0.004 0.996 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.032 0.968 33 H 0.165 0.835 34 H 0.105 0.895 35 H 0.044 0.956 36 H 0.111 0.889 37 H 0.099 0.901 38 H 0.119 0.881 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.040 3.882 21.675 22.114 hybrid contribution 0.970 0.073 -1.125 1.487 sum -1.070 3.955 20.550 20.955 Atomic orbital electron populations 1.21491 0.94182 1.00195 1.00451 1.20505 0.96429 0.95479 0.93250 1.21674 0.99333 0.95844 1.01024 1.19009 0.93917 0.94172 0.92655 1.21652 1.30190 1.11903 0.91454 0.91624 1.25931 0.95698 0.95920 1.02596 1.70116 1.38895 1.24977 1.23994 0.85500 0.78128 0.78806 0.79266 1.18495 1.20770 1.20737 1.21840 0.95629 0.97645 0.89692 1.60522 1.63246 1.06873 1.00819 1.22235 0.97205 0.98434 0.89105 1.22835 0.98164 0.82233 0.94648 0.90979 1.22983 1.01377 0.99156 0.95134 1.23124 1.00447 0.93862 1.01341 1.23732 1.00850 0.98137 0.81088 1.88858 1.85859 1.30531 1.26857 0.91641 0.94188 0.94835 0.94646 0.93274 0.91880 0.99851 0.99562 0.93145 0.92158 0.96837 0.83537 0.89501 0.95572 0.88923 0.90050 0.88147 0.90889 0.91285 0.88382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.22 8.06 71.98 0.58 -3.64 16 2 C -0.06 -2.36 0.60 -52.18 -0.03 -2.39 16 3 C -0.12 -4.73 7.89 71.98 0.57 -4.17 16 4 C 0.04 2.14 4.04 29.85 0.12 2.26 16 5 C -0.51 -29.14 7.65 25.60 0.20 -28.95 16 6 H 0.07 3.58 5.68 -2.91 -0.02 3.57 16 7 C 0.00 -0.28 5.46 84.65 0.46 0.18 16 8 N -0.94 -58.23 13.29 21.45 0.28 -57.94 16 9 Si 0.96 45.20 29.54 68.60 2.03 47.22 16 10 H -0.26 -11.71 7.11 99.48 0.71 -11.01 16 11 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 12 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 13 C 0.08 2.97 4.65 86.31 0.40 3.38 16 14 N -0.68 -20.96 5.71 -513.86 -2.94 -23.89 16 15 C 0.06 1.50 5.19 86.30 0.45 1.95 16 16 C 0.08 1.68 3.69 30.97 0.11 1.79 16 17 H 0.07 1.57 8.14 -2.39 -0.02 1.56 16 18 C -0.15 -2.18 6.64 31.58 0.21 -1.97 16 19 C -0.15 -1.92 7.15 31.89 0.23 -1.70 16 20 C 0.04 0.61 7.72 72.66 0.56 1.17 16 21 O -0.40 -9.65 10.62 -148.98 -1.58 -11.23 16 22 H 0.06 2.30 7.60 -2.39 -0.02 2.29 16 23 H 0.04 1.68 6.62 -2.39 -0.02 1.67 16 24 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.03 1.38 8.14 -2.38 -0.02 1.36 16 26 H 0.05 2.04 6.62 -2.39 -0.02 2.03 16 27 H 0.06 2.10 6.57 -2.39 -0.02 2.08 16 28 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 29 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 30 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 31 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.34 10.81 6.26 -89.70 -0.56 10.25 16 34 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.03 0.68 8.14 -2.39 -0.02 0.67 16 36 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 37 H 0.08 1.16 7.70 -2.39 -0.02 1.14 16 38 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 40 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.10 1.36 8.14 -2.38 -0.02 1.34 16 Total: -1.00 -65.34 318.57 2.07 -63.27 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: 0.42 Total: 14.65 kcal Atomic # 6 Polarization: -35.94 SS G_CDS: 3.86 Total: -32.08 kcal Atomic # 7 Polarization: -79.18 SS G_CDS: -2.65 Total: -81.83 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: -1.58 Total: -11.23 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.22 kcal Total: -65.34 2.07 -63.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078052206.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.823 kcal (2) G-P(sol) polarization free energy of solvation -65.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds