Wall clock time and date at job start Sun Mar 29 2020 22:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47175 * 2 1 4 4 C 1.52997 * 109.47355 * 239.99718 * 2 1 3 5 5 C 1.50700 * 109.47080 * 59.99998 * 4 2 1 6 6 H 1.08001 * 119.99895 * 0.02562 * 5 4 2 7 7 C 1.37872 * 120.00139 * 180.02562 * 5 4 2 8 8 N 1.31517 * 120.00134 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00173 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47372 * 359.97438 * 9 7 5 11 11 H 1.48509 * 109.47393 * 119.99955 * 9 7 5 12 12 H 1.48505 * 109.47325 * 239.99611 * 9 7 5 13 13 C 1.53000 * 109.47037 * 119.99976 * 2 1 3 14 14 N 1.46905 * 109.46890 * 300.00312 * 13 2 1 15 15 C 1.46900 * 111.00178 * 180.02562 * 14 13 2 16 16 C 1.52993 * 109.47452 * 185.21344 * 15 14 13 17 17 C 1.53006 * 115.54806 * 65.10156 * 16 15 14 18 18 O 1.42897 * 109.47286 * 65.14599 * 17 16 15 19 19 C 1.52997 * 117.50009 * 210.76920 * 16 15 14 20 20 C 1.52995 * 117.50142 * 279.42974 * 16 15 14 21 21 H 1.08994 * 109.47304 * 300.00179 * 1 2 3 22 22 H 1.09000 * 109.46897 * 60.00453 * 1 2 3 23 23 H 1.09000 * 109.47185 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47029 * 179.97438 * 3 2 1 25 25 H 1.09000 * 109.46838 * 299.99583 * 3 2 1 26 26 H 1.08994 * 109.47151 * 59.99727 * 3 2 1 27 27 H 1.09000 * 109.47215 * 180.02562 * 4 2 1 28 28 H 1.09000 * 109.47010 * 300.00151 * 4 2 1 29 29 H 0.97005 * 120.00307 * 180.02562 * 8 7 5 30 30 H 1.09000 * 109.47323 * 179.97438 * 13 2 1 31 31 H 1.09000 * 109.47308 * 59.99861 * 13 2 1 32 32 H 1.00908 * 110.99773 * 303.95016 * 14 13 2 33 33 H 1.09003 * 109.47314 * 65.21000 * 15 14 13 34 34 H 1.09005 * 109.46742 * 305.22062 * 15 14 13 35 35 H 1.08998 * 109.46929 * 305.14009 * 17 16 15 36 36 H 1.09000 * 109.47015 * 185.14824 * 17 16 15 37 37 H 0.96701 * 113.99957 * 180.02562 * 18 17 16 38 38 H 1.09003 * 117.49592 * 215.00365 * 19 16 15 39 39 H 1.09001 * 117.50054 * 0.02570 * 19 16 15 40 40 H 1.09002 * 117.49764 * 359.97438 * 20 16 15 41 41 H 1.09005 * 117.50149 * 144.99098 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.5378 -0.0109 -2.4797 6 1 0.9172 0.8674 -2.3806 7 6 1.8704 -0.4823 -3.7319 8 7 2.6266 -1.5516 -3.8525 9 14 1.2484 0.3986 -5.2571 10 1 0.4238 1.5656 -4.8531 11 1 2.4037 0.8644 -6.0656 12 1 0.4227 -0.5343 -6.0655 13 6 2.0400 -0.7212 1.2493 14 7 1.5502 -0.0287 2.4487 15 6 2.0217 -0.6944 3.6704 16 6 1.3884 -0.0261 4.8922 17 6 -0.1308 -0.1662 5.0078 18 8 -0.4690 -1.5410 5.2021 19 6 2.1977 -0.0158 6.1906 20 6 2.0176 1.2765 5.3904 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 3.1300 1.4425 0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6767 1.9563 0.8899 27 1 3.1301 -0.7217 -1.2489 28 1 1.6767 -1.7489 -1.2491 29 1 2.8609 -1.8831 -4.7336 30 1 3.1300 -0.7217 1.2491 31 1 1.6766 -1.7489 1.2493 32 1 1.8197 0.9437 2.4402 33 1 3.1068 -0.6127 3.7331 34 1 1.7376 -1.7465 3.6436 35 1 -0.5998 0.1977 4.0936 36 1 -0.4862 0.4188 5.8561 37 1 -1.4185 -1.7047 5.2835 38 1 1.6477 -0.1089 7.1272 39 1 3.1814 -0.4849 6.1743 40 1 2.8830 1.6572 4.8478 41 1 1.3492 2.0338 5.8004 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080247004.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:42 Heat of formation + Delta-G solvation = -46.272619 kcal Electronic energy + Delta-G solvation = -17883.736866 eV Core-core repulsion = 15184.623509 eV Total energy + Delta-G solvation = -2699.113357 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.93606 -37.27496 -35.79490 -33.66000 -32.00029 -27.61088 -26.86598 -26.30549 -25.97914 -24.15587 -22.60822 -21.91640 -19.21542 -17.77111 -17.29166 -16.27387 -16.00929 -15.23070 -14.70776 -14.65534 -14.03801 -13.76626 -13.48526 -13.03781 -12.76660 -12.55857 -12.05177 -11.94939 -11.78379 -11.66075 -11.11997 -10.92350 -10.83558 -10.73468 -10.49427 -10.43969 -10.23753 -10.10156 -10.07559 -9.76753 -9.64242 -8.97361 -8.78200 -8.29523 -8.00016 -5.93813 -3.93811 3.33852 3.41646 3.45112 3.50474 4.27950 4.40946 4.52119 4.69995 4.81752 5.04735 5.18078 5.36227 5.42048 5.49642 5.64818 5.70730 5.74520 5.84878 5.86593 5.96315 6.00512 6.03158 6.15444 6.30636 6.39429 6.55980 6.69903 6.82813 6.86502 7.24746 7.27788 7.29889 7.46687 7.62761 7.72972 7.77831 7.89815 8.06892 8.51440 9.11921 9.68925 11.17938 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.044468 B = 0.004450 C = 0.004391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.511958 B = 6289.992225 C = 6374.522750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.058 4.058 3 C -0.128 4.128 4 C 0.033 3.967 5 C -0.505 4.505 6 H 0.059 0.941 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.887 3.113 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.285 1.285 13 C 0.071 3.929 14 N -0.682 5.682 15 C 0.098 3.902 16 C -0.114 4.114 17 C 0.120 3.880 18 O -0.569 6.569 19 C -0.169 4.169 20 C -0.170 4.170 21 H 0.041 0.959 22 H 0.053 0.947 23 H 0.039 0.961 24 H 0.039 0.961 25 H 0.063 0.937 26 H 0.033 0.967 27 H 0.012 0.988 28 H 0.015 0.985 29 H 0.258 0.742 30 H 0.021 0.979 31 H 0.066 0.934 32 H 0.336 0.664 33 H 0.024 0.976 34 H 0.079 0.921 35 H 0.064 0.936 36 H 0.035 0.965 37 H 0.376 0.624 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.096 0.904 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.318 4.299 18.120 18.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.058 4.058 3 C -0.186 4.186 4 C -0.005 4.005 5 C -0.544 4.544 6 H 0.078 0.922 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.715 3.285 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.212 1.212 13 C -0.058 4.058 14 N -0.314 5.314 15 C -0.031 4.031 16 C -0.114 4.114 17 C 0.043 3.957 18 O -0.374 6.374 19 C -0.207 4.207 20 C -0.207 4.207 21 H 0.060 0.940 22 H 0.072 0.928 23 H 0.058 0.942 24 H 0.058 0.942 25 H 0.082 0.918 26 H 0.052 0.948 27 H 0.031 0.969 28 H 0.033 0.967 29 H 0.068 0.932 30 H 0.039 0.961 31 H 0.084 0.916 32 H 0.155 0.845 33 H 0.042 0.958 34 H 0.097 0.903 35 H 0.082 0.918 36 H 0.054 0.946 37 H 0.222 0.778 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.114 0.886 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -3.190 3.795 17.946 18.618 hybrid contribution 0.160 0.711 -0.910 1.166 sum -3.031 4.507 17.036 17.881 Atomic orbital electron populations 1.21583 0.95048 1.00532 1.00024 1.20620 0.95835 0.94949 0.94426 1.21766 0.99642 0.96815 1.00360 1.19132 0.95881 0.95237 0.90221 1.21282 1.30618 1.11853 0.90616 0.92247 1.25018 0.95437 0.95126 0.99050 1.69982 1.37397 1.23262 1.23139 0.86614 0.78581 0.79743 0.83528 1.19781 1.21211 1.21165 1.22097 0.96211 0.98169 0.89311 1.60463 1.63718 1.06194 1.01012 1.21351 0.95060 0.98859 0.87862 1.21356 0.93740 1.00945 0.95401 1.21500 0.92595 0.82339 0.99295 1.86470 1.28737 1.26089 1.96104 1.22983 1.01526 1.00991 0.95165 1.23007 1.02969 0.90946 1.03798 0.93984 0.92777 0.94205 0.94173 0.91759 0.94823 0.96948 0.96671 0.93246 0.96060 0.91586 0.84525 0.95818 0.90262 0.91787 0.94642 0.77768 0.88800 0.88854 0.88571 0.88760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.25 8.06 37.16 0.30 -1.95 16 2 C -0.06 -1.17 0.60 -154.51 -0.09 -1.27 16 3 C -0.13 -2.41 7.89 37.16 0.29 -2.12 16 4 C 0.03 0.84 4.04 -27.88 -0.11 0.73 16 5 C -0.51 -13.96 7.65 -34.44 -0.26 -14.22 16 6 H 0.06 1.60 5.68 -52.49 -0.30 1.30 16 7 C 0.05 1.54 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -27.11 13.29 55.43 0.74 -26.38 16 9 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 10 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 13 C 0.07 1.27 4.64 -3.82 -0.02 1.25 16 14 N -0.68 -10.22 5.52 -113.78 -0.63 -10.85 16 15 C 0.10 1.34 5.46 -3.83 -0.02 1.32 16 16 C -0.11 -1.31 1.98 -154.51 -0.31 -1.62 16 17 C 0.12 1.33 6.81 37.16 0.25 1.59 16 18 O -0.57 -6.66 13.57 -35.23 -0.48 -7.13 16 19 C -0.17 -1.69 9.94 -26.70 -0.27 -1.96 16 20 C -0.17 -1.65 9.94 -26.70 -0.27 -1.91 16 21 H 0.04 0.74 7.60 -51.93 -0.39 0.34 16 22 H 0.05 1.13 6.62 -51.93 -0.34 0.79 16 23 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.06 1.31 6.62 -51.93 -0.34 0.96 16 26 H 0.03 0.53 6.57 -51.93 -0.34 0.19 16 27 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.01 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 30 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.34 4.82 6.83 -39.29 -0.27 4.55 16 33 H 0.02 0.32 8.09 -51.93 -0.42 -0.10 16 34 H 0.08 1.20 8.10 -51.93 -0.42 0.78 16 35 H 0.06 0.77 8.05 -51.93 -0.42 0.35 16 36 H 0.04 0.33 8.09 -51.93 -0.42 -0.09 16 37 H 0.38 2.72 9.12 45.56 0.42 3.13 16 38 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 326.82 15.07 4.93 4.93 Total: -1.00 -30.59 326.82 -7.68 -38.27 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -6.62 Total: 3.19 kcal Atomic # 6 Polarization: -18.13 SS G_CDS: -0.60 Total: -18.73 kcal Atomic # 7 Polarization: -37.34 SS G_CDS: 0.11 Total: -37.23 kcal Atomic # 8 Polarization: -6.66 SS G_CDS: -0.48 Total: -7.13 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.59 -7.68 -38.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080247004.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.007 kcal (2) G-P(sol) polarization free energy of solvation -30.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds