Wall clock time and date at job start Sun Mar 29 2020 22:25:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47175 * 2 1 4 4 C 1.52997 * 109.47355 * 239.99718 * 2 1 3 5 5 C 1.50700 * 109.47080 * 59.99998 * 4 2 1 6 6 H 1.08001 * 119.99895 * 0.02562 * 5 4 2 7 7 C 1.37872 * 120.00139 * 180.02562 * 5 4 2 8 8 N 1.31517 * 120.00134 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00173 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47372 * 359.97438 * 9 7 5 11 11 H 1.48509 * 109.47393 * 119.99955 * 9 7 5 12 12 H 1.48505 * 109.47325 * 239.99611 * 9 7 5 13 13 C 1.53000 * 109.47037 * 119.99976 * 2 1 3 14 14 N 1.46905 * 109.46890 * 300.00312 * 13 2 1 15 15 C 1.46900 * 111.00178 * 180.02562 * 14 13 2 16 16 C 1.52993 * 109.47452 * 185.21344 * 15 14 13 17 17 C 1.53006 * 115.54806 * 65.10156 * 16 15 14 18 18 O 1.42897 * 109.47286 * 65.14599 * 17 16 15 19 19 C 1.52997 * 117.50009 * 210.76920 * 16 15 14 20 20 C 1.52995 * 117.50142 * 279.42974 * 16 15 14 21 21 H 1.08994 * 109.47304 * 300.00179 * 1 2 3 22 22 H 1.09000 * 109.46897 * 60.00453 * 1 2 3 23 23 H 1.09000 * 109.47185 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47029 * 179.97438 * 3 2 1 25 25 H 1.09000 * 109.46838 * 299.99583 * 3 2 1 26 26 H 1.08994 * 109.47151 * 59.99727 * 3 2 1 27 27 H 1.09000 * 109.47215 * 180.02562 * 4 2 1 28 28 H 1.09000 * 109.47010 * 300.00151 * 4 2 1 29 29 H 0.97005 * 120.00307 * 180.02562 * 8 7 5 30 30 H 1.09000 * 109.47323 * 179.97438 * 13 2 1 31 31 H 1.09000 * 109.47308 * 59.99861 * 13 2 1 32 32 H 1.00908 * 110.99773 * 303.95016 * 14 13 2 33 33 H 1.09003 * 109.47314 * 65.21000 * 15 14 13 34 34 H 1.09005 * 109.46742 * 305.22062 * 15 14 13 35 35 H 1.08998 * 109.46929 * 305.14009 * 17 16 15 36 36 H 1.09000 * 109.47015 * 185.14824 * 17 16 15 37 37 H 0.96701 * 113.99957 * 180.02562 * 18 17 16 38 38 H 1.09003 * 117.49592 * 215.00365 * 19 16 15 39 39 H 1.09001 * 117.50054 * 0.02570 * 19 16 15 40 40 H 1.09002 * 117.49764 * 359.97438 * 20 16 15 41 41 H 1.09005 * 117.50149 * 144.99098 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.5378 -0.0109 -2.4797 6 1 0.9172 0.8674 -2.3806 7 6 1.8704 -0.4823 -3.7319 8 7 2.6266 -1.5516 -3.8525 9 14 1.2484 0.3986 -5.2571 10 1 0.4238 1.5656 -4.8531 11 1 2.4037 0.8644 -6.0656 12 1 0.4227 -0.5343 -6.0655 13 6 2.0400 -0.7212 1.2493 14 7 1.5502 -0.0287 2.4487 15 6 2.0217 -0.6944 3.6704 16 6 1.3884 -0.0261 4.8922 17 6 -0.1308 -0.1662 5.0078 18 8 -0.4690 -1.5410 5.2021 19 6 2.1977 -0.0158 6.1906 20 6 2.0176 1.2765 5.3904 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 3.1300 1.4425 0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6767 1.9563 0.8899 27 1 3.1301 -0.7217 -1.2489 28 1 1.6767 -1.7489 -1.2491 29 1 2.8609 -1.8831 -4.7336 30 1 3.1300 -0.7217 1.2491 31 1 1.6766 -1.7489 1.2493 32 1 1.8197 0.9437 2.4402 33 1 3.1068 -0.6127 3.7331 34 1 1.7376 -1.7465 3.6436 35 1 -0.5998 0.1977 4.0936 36 1 -0.4862 0.4188 5.8561 37 1 -1.4185 -1.7047 5.2835 38 1 1.6477 -0.1089 7.1272 39 1 3.1814 -0.4849 6.1743 40 1 2.8830 1.6572 4.8478 41 1 1.3492 2.0338 5.8004 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080247004.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:41 Heat of formation + Delta-G solvation = -67.378955 kcal Electronic energy + Delta-G solvation = -17884.652105 eV Core-core repulsion = 15184.623509 eV Total energy + Delta-G solvation = -2700.028596 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.92375 -38.75329 -36.67687 -35.26034 -33.88209 -29.25018 -28.25247 -27.88867 -27.18089 -25.75060 -23.93550 -23.10715 -20.22317 -19.33946 -18.33612 -18.12454 -17.17336 -16.58183 -16.19634 -15.77742 -15.57741 -15.17360 -14.60084 -14.44405 -14.17375 -13.95666 -13.81134 -13.42052 -13.14275 -12.82728 -12.67552 -12.46801 -12.38122 -12.25374 -12.16363 -12.03685 -11.79753 -11.39875 -11.26235 -10.95619 -10.86874 -10.77875 -10.51582 -10.50985 -9.27483 -8.13770 -6.21065 1.40628 1.41510 1.53921 2.44007 2.69118 3.20238 3.32857 3.53263 3.88072 3.90461 4.07617 4.18241 4.23111 4.36665 4.39266 4.57088 4.65610 4.77804 4.79981 4.81044 4.91210 4.96799 5.00499 5.08757 5.08945 5.19657 5.22121 5.22821 5.26138 5.51916 5.53975 5.58788 5.65880 5.87671 5.92909 6.08479 6.36928 6.57216 6.94367 6.99750 7.46491 8.98981 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.044468 B = 0.004450 C = 0.004391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.511958 B = 6289.992225 C = 6374.522750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.054 4.054 3 C -0.121 4.121 4 C 0.039 3.961 5 C -0.513 4.513 6 H 0.068 0.932 7 C -0.005 4.005 8 N -0.939 5.939 9 Si 0.958 3.042 10 H -0.259 1.259 11 H -0.282 1.282 12 H -0.283 1.283 13 C 0.083 3.917 14 N -0.673 5.673 15 C 0.102 3.898 16 C -0.134 4.134 17 C 0.121 3.879 18 O -0.591 6.591 19 C -0.165 4.165 20 C -0.156 4.156 21 H 0.068 0.932 22 H 0.039 0.961 23 H 0.027 0.973 24 H 0.036 0.964 25 H 0.048 0.952 26 H 0.069 0.931 27 H -0.017 1.017 28 H -0.018 1.018 29 H 0.259 0.741 30 H 0.015 0.985 31 H 0.050 0.950 32 H 0.344 0.656 33 H 0.026 0.974 34 H 0.058 0.942 35 H 0.053 0.947 36 H 0.057 0.943 37 H 0.393 0.607 38 H 0.104 0.896 39 H 0.093 0.907 40 H 0.098 0.902 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.213 6.304 19.405 20.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.055 4.055 3 C -0.178 4.178 4 C 0.001 3.999 5 C -0.551 4.551 6 H 0.086 0.914 7 C -0.202 4.202 8 N -0.581 5.581 9 Si 0.783 3.217 10 H -0.183 1.183 11 H -0.208 1.208 12 H -0.209 1.209 13 C -0.046 4.046 14 N -0.306 5.306 15 C -0.028 4.028 16 C -0.135 4.135 17 C 0.044 3.956 18 O -0.399 6.399 19 C -0.202 4.202 20 C -0.193 4.193 21 H 0.087 0.913 22 H 0.058 0.942 23 H 0.046 0.954 24 H 0.055 0.945 25 H 0.067 0.933 26 H 0.087 0.913 27 H 0.001 0.999 28 H 0.000 1.000 29 H 0.068 0.932 30 H 0.033 0.967 31 H 0.069 0.931 32 H 0.164 0.836 33 H 0.044 0.956 34 H 0.077 0.923 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.242 0.758 38 H 0.122 0.878 39 H 0.111 0.889 40 H 0.116 0.884 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -4.105 5.815 19.253 20.526 hybrid contribution 0.452 0.032 -1.253 1.332 sum -3.652 5.847 18.000 19.275 Atomic orbital electron populations 1.21481 0.94222 0.99943 1.00551 1.20485 0.96368 0.95682 0.92930 1.21676 0.99411 0.95454 1.01301 1.19022 0.93926 0.94069 0.92883 1.21650 1.30148 1.11905 0.91368 0.91441 1.25940 0.95697 0.95899 1.02650 1.70126 1.38956 1.25035 1.23972 0.85503 0.78122 0.78821 0.79256 1.18307 1.20796 1.20890 1.21797 0.95634 0.97393 0.89806 1.60381 1.63449 1.06400 1.00321 1.21288 0.95356 0.97935 0.88172 1.21331 0.94260 1.02782 0.95085 1.21515 0.92167 0.82266 0.99675 1.86430 1.30601 1.26711 1.96125 1.23047 1.01253 1.01159 0.94784 1.23088 1.02808 0.90619 1.02775 0.91316 0.94158 0.95394 0.94530 0.93321 0.91266 0.99861 0.99983 0.93185 0.96721 0.93116 0.83627 0.95593 0.92326 0.92889 0.92461 0.75818 0.87800 0.88895 0.88378 0.87062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.04 8.06 71.98 0.58 -3.46 16 2 C -0.05 -2.20 0.60 -52.18 -0.03 -2.23 16 3 C -0.12 -4.38 7.89 71.98 0.57 -3.81 16 4 C 0.04 2.04 4.04 29.85 0.12 2.16 16 5 C -0.51 -28.68 7.65 25.60 0.20 -28.48 16 6 H 0.07 3.61 5.68 -2.91 -0.02 3.59 16 7 C -0.01 -0.31 5.46 84.65 0.46 0.15 16 8 N -0.94 -58.18 13.29 21.45 0.28 -57.89 16 9 Si 0.96 44.74 29.54 68.60 2.03 46.77 16 10 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 11 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 12 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 13 C 0.08 2.98 4.64 86.30 0.40 3.38 16 14 N -0.67 -19.21 5.52 -513.88 -2.84 -22.05 16 15 C 0.10 2.66 5.46 86.30 0.47 3.14 16 16 C -0.13 -2.80 1.98 -52.18 -0.10 -2.91 16 17 C 0.12 2.42 6.81 71.98 0.49 2.91 16 18 O -0.59 -12.96 13.57 -148.98 -2.02 -14.98 16 19 C -0.16 -2.89 9.94 30.62 0.30 -2.58 16 20 C -0.16 -2.53 9.94 30.62 0.30 -2.22 16 21 H 0.07 2.27 7.60 -2.39 -0.02 2.25 16 22 H 0.04 1.64 6.62 -2.39 -0.02 1.63 16 23 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 24 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 25 H 0.05 1.91 6.62 -2.39 -0.02 1.89 16 26 H 0.07 2.00 6.57 -2.39 -0.02 1.99 16 27 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 28 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 16 29 H 0.26 15.15 8.31 -92.70 -0.77 14.38 16 30 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.34 8.95 6.83 -89.69 -0.61 8.33 16 33 H 0.03 0.67 8.09 -2.39 -0.02 0.65 16 34 H 0.06 1.78 8.10 -2.38 -0.02 1.76 16 35 H 0.05 1.16 8.05 -2.39 -0.02 1.14 16 36 H 0.06 0.89 8.09 -2.39 -0.02 0.87 16 37 H 0.39 5.11 9.12 -74.06 -0.68 4.43 16 38 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.11 1.45 8.14 -2.38 -0.02 1.43 16 Total: -1.00 -66.46 326.82 0.92 -65.53 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: -0.29 Total: 16.58 kcal Atomic # 6 Polarization: -37.71 SS G_CDS: 3.76 Total: -33.95 kcal Atomic # 7 Polarization: -77.38 SS G_CDS: -2.55 Total: -79.94 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: -2.02 Total: -14.98 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -66.46 0.92 -65.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080247004.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.848 kcal (2) G-P(sol) polarization free energy of solvation -66.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds