Wall clock time and date at job start Sun Mar 29 2020 22:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47197 * 2 1 4 4 O 1.42899 * 109.47132 * 239.99698 * 2 1 3 5 5 C 1.52998 * 109.47073 * 120.00081 * 2 1 3 6 6 C 1.53001 * 109.47230 * 59.99526 * 5 2 1 7 7 N 1.46507 * 109.47200 * 180.02562 * 6 5 2 8 8 C 1.36933 * 119.99740 * 270.00108 * 7 6 5 9 9 H 1.08002 * 119.99895 * 141.91882 * 8 7 6 10 10 C 1.38811 * 120.00609 * 321.92596 * 8 7 6 11 11 N 1.31613 * 120.00573 * 156.19417 * 10 8 7 12 12 Si 1.86803 * 119.99619 * 336.19044 * 10 8 7 13 13 H 1.48496 * 109.47076 * 95.29237 * 12 10 8 14 14 H 1.48497 * 109.47269 * 215.29102 * 12 10 8 15 15 H 1.48503 * 109.47103 * 335.29691 * 12 10 8 16 16 C 1.46491 * 119.99793 * 90.00136 * 7 6 5 17 17 C 1.54266 * 110.03402 * 242.57327 * 16 7 6 18 18 C 1.54968 * 104.16260 * 217.14083 * 17 16 7 19 19 C 1.54881 * 102.77651 * 37.88640 * 18 17 16 20 20 C 1.53880 * 110.03208 * 125.35899 * 16 7 6 21 21 H 1.09001 * 109.47143 * 300.00659 * 1 2 3 22 22 H 1.09004 * 109.47097 * 59.99770 * 1 2 3 23 23 H 1.08998 * 109.47790 * 179.97438 * 1 2 3 24 24 H 1.09006 * 109.46844 * 179.97438 * 3 2 1 25 25 H 1.08996 * 109.47303 * 299.99499 * 3 2 1 26 26 H 1.08994 * 109.47057 * 60.00287 * 3 2 1 27 27 H 0.96698 * 113.99851 * 179.97438 * 4 2 1 28 28 H 1.09003 * 109.47204 * 299.99945 * 5 2 1 29 29 H 1.09000 * 109.47621 * 180.02562 * 5 2 1 30 30 H 1.09000 * 109.46755 * 60.00620 * 6 5 2 31 31 H 1.08994 * 109.47498 * 300.00401 * 6 5 2 32 32 H 0.96999 * 120.00168 * 179.97438 * 11 10 8 33 33 H 1.09001 * 110.01933 * 3.96816 * 16 7 6 34 34 H 1.08994 * 110.48602 * 335.78883 * 17 16 7 35 35 H 1.09000 * 110.48777 * 98.42953 * 17 16 7 36 36 H 1.08997 * 110.71647 * 279.57249 * 18 17 16 37 37 H 1.08999 * 110.92203 * 156.29881 * 18 17 16 38 38 H 1.09001 * 110.48425 * 203.40567 * 19 18 17 39 39 H 1.09001 * 110.60360 * 80.81837 * 19 18 17 40 40 H 1.08998 * 110.03027 * 238.56956 * 20 16 7 41 41 H 1.08998 * 110.02711 * 359.97438 * 20 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.0399 -0.7213 1.2492 6 6 1.5298 -2.1637 1.2493 7 7 2.0177 -2.8542 2.4458 8 6 3.2142 -3.5193 2.4124 9 1 3.8696 -3.4951 3.2705 10 6 3.5848 -4.2247 1.2758 11 7 4.8566 -4.4614 1.0336 12 14 2.2783 -4.8380 0.0898 13 1 2.1106 -3.8571 -1.0123 14 1 2.6956 -6.1476 -0.4723 15 1 0.9901 -4.9968 0.8114 16 6 1.2255 -2.8330 3.6778 17 6 2.0111 -2.1222 4.7991 18 6 1.6563 -2.9234 6.0773 19 6 1.6060 -4.3836 5.5632 20 6 0.9676 -4.2702 4.1635 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 3.1300 1.4425 0.0005 25 1 1.6768 1.9563 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 2.9703 -0.7115 -1.2330 28 1 1.6766 -0.2074 2.1392 29 1 3.1299 -0.7209 1.2495 30 1 1.8932 -2.6776 0.3593 31 1 0.4399 -2.1637 1.2492 32 1 5.1155 -4.9546 0.2395 33 1 0.2785 -2.3221 3.5038 34 1 3.0823 -2.1704 4.6040 35 1 1.6861 -1.0862 4.8949 36 1 0.6855 -2.6175 6.4671 37 1 2.4297 -2.8075 6.8365 38 1 0.9858 -4.9969 6.2169 39 1 2.6109 -4.7998 5.4916 40 1 -0.1046 -4.4564 4.2259 41 1 1.4315 -4.9833 3.4822 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081676540.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:04 Heat of formation + Delta-G solvation = -69.396995 kcal Electronic energy + Delta-G solvation = -18945.086694 eV Core-core repulsion = 16244.970589 eV Total energy + Delta-G solvation = -2700.116105 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.91150 -38.95513 -36.12219 -33.98996 -33.13656 -30.16505 -29.35416 -28.38215 -28.18127 -25.55613 -23.39932 -21.44369 -21.02576 -20.59868 -18.35985 -17.48480 -17.13009 -16.89495 -16.06384 -15.90403 -15.45998 -15.08128 -14.70174 -14.34976 -14.06886 -13.94258 -13.47030 -13.30727 -13.04005 -12.92465 -12.73625 -12.58933 -12.55601 -12.14222 -12.03320 -11.87288 -11.75851 -11.72586 -11.41488 -11.29147 -11.24989 -11.18679 -10.74923 -10.51769 -8.60255 -8.15506 -5.48504 1.35562 1.40419 1.49780 2.45812 3.06761 3.31896 3.45981 3.94166 3.98428 4.02013 4.05739 4.17728 4.31383 4.38347 4.66211 4.69601 4.75444 4.77279 4.82518 4.89347 4.91384 4.93556 4.96827 4.98195 5.08076 5.14546 5.19913 5.22565 5.30667 5.33565 5.40404 5.49385 5.57531 5.62742 5.66690 6.03623 6.28289 6.82961 7.10748 7.75572 8.17256 9.04807 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.018050 B = 0.010536 C = 0.007854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.912879 B = 2657.023225 C = 3564.373968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.118 3.882 3 C -0.166 4.166 4 O -0.582 6.582 5 C -0.143 4.143 6 C 0.136 3.864 7 N -0.612 5.612 8 C -0.226 4.226 9 H 0.043 0.957 10 C -0.013 4.013 11 N -0.948 5.948 12 Si 0.925 3.075 13 H -0.275 1.275 14 H -0.318 1.318 15 H -0.267 1.267 16 C 0.162 3.838 17 C -0.130 4.130 18 C -0.111 4.111 19 C -0.116 4.116 20 C -0.136 4.136 21 H 0.089 0.911 22 H 0.066 0.934 23 H 0.048 0.952 24 H 0.053 0.947 25 H 0.068 0.932 26 H 0.078 0.922 27 H 0.381 0.619 28 H 0.074 0.926 29 H 0.041 0.959 30 H 0.034 0.966 31 H 0.054 0.946 32 H 0.259 0.741 33 H 0.073 0.927 34 H 0.039 0.961 35 H 0.068 0.932 36 H 0.085 0.915 37 H 0.064 0.936 38 H 0.076 0.924 39 H 0.038 0.962 40 H 0.067 0.933 41 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.292 9.589 3.826 14.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.078 3.922 3 C -0.224 4.224 4 O -0.389 6.389 5 C -0.183 4.183 6 C 0.011 3.989 7 N -0.334 5.334 8 C -0.356 4.356 9 H 0.061 0.939 10 C -0.209 4.209 11 N -0.593 5.593 12 Si 0.755 3.245 13 H -0.202 1.202 14 H -0.247 1.247 15 H -0.191 1.191 16 C 0.056 3.944 17 C -0.169 4.169 18 C -0.149 4.149 19 C -0.153 4.153 20 C -0.175 4.175 21 H 0.108 0.892 22 H 0.085 0.915 23 H 0.068 0.932 24 H 0.073 0.927 25 H 0.087 0.913 26 H 0.097 0.903 27 H 0.229 0.771 28 H 0.093 0.907 29 H 0.059 0.941 30 H 0.052 0.948 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.091 0.909 34 H 0.058 0.942 35 H 0.086 0.914 36 H 0.103 0.897 37 H 0.083 0.917 38 H 0.095 0.905 39 H 0.057 0.943 40 H 0.086 0.914 41 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -10.853 9.454 3.623 14.843 hybrid contribution 0.838 -0.817 -0.826 1.432 sum -10.015 8.638 2.797 13.518 Atomic orbital electron populations 1.21804 0.92119 1.02270 1.03267 1.21429 0.95527 0.91285 0.83989 1.22385 1.01349 0.95384 1.03276 1.86465 1.27421 1.80322 1.44703 1.22595 1.00237 0.97288 0.98155 1.21235 0.96494 0.92023 0.89106 1.44479 1.21155 1.58588 1.09132 1.18389 0.93341 1.23375 1.00475 0.93950 1.25895 0.96450 0.98632 0.99931 1.69992 1.16568 1.44334 1.28400 0.86119 0.81781 0.76491 0.80062 1.20213 1.24701 1.19131 1.21335 0.93005 0.94112 0.85908 1.22735 0.99881 0.98888 0.95386 1.22404 1.01837 0.94257 0.96402 1.22220 0.99677 0.97642 0.95793 1.22535 0.99572 0.98538 0.96845 0.89186 0.91505 0.93248 0.92742 0.91330 0.90318 0.77121 0.90701 0.94054 0.94796 0.92783 0.93228 0.90865 0.94171 0.91358 0.89686 0.91686 0.90500 0.94314 0.91418 0.94308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.56 8.49 71.98 0.61 -2.95 16 2 C 0.12 3.53 1.09 -10.79 -0.01 3.52 16 3 C -0.17 -3.92 8.82 71.98 0.63 -3.29 16 4 O -0.58 -20.29 12.31 -148.98 -1.83 -22.12 16 5 C -0.14 -5.07 4.78 30.59 0.15 -4.92 16 6 C 0.14 5.71 4.01 86.38 0.35 6.06 16 7 N -0.61 -27.94 2.02 -674.02 -1.36 -29.30 16 8 C -0.23 -12.49 8.19 84.03 0.69 -11.80 16 9 H 0.04 2.63 7.09 -2.91 -0.02 2.60 16 10 C -0.01 -0.77 5.27 84.86 0.45 -0.32 16 11 N -0.95 -59.44 13.97 21.65 0.30 -59.13 16 12 Si 0.92 47.90 25.19 68.60 1.73 49.63 16 13 H -0.27 -14.01 6.65 99.48 0.66 -13.35 16 14 H -0.32 -16.89 7.11 99.48 0.71 -16.18 16 15 H -0.27 -13.39 7.11 99.48 0.71 -12.68 16 16 C 0.16 6.10 3.42 45.72 0.16 6.26 16 17 C -0.13 -4.43 6.43 31.70 0.20 -4.22 16 18 C -0.11 -3.12 6.91 31.91 0.22 -2.90 16 19 C -0.12 -3.71 6.83 31.67 0.22 -3.50 16 20 C -0.14 -5.03 6.25 31.32 0.20 -4.83 16 21 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 22 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 23 H 0.05 1.42 6.43 -2.39 -0.02 1.41 16 24 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 25 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.38 12.10 9.04 -74.06 -0.67 11.43 16 28 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 29 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.03 1.63 2.99 -2.39 -0.01 1.62 16 31 H 0.05 2.06 6.19 -2.39 -0.01 2.05 16 32 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 33 H 0.07 2.42 7.81 -2.39 -0.02 2.40 16 34 H 0.04 1.67 6.65 -2.39 -0.02 1.65 16 35 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 41 H 0.04 1.75 7.16 -2.39 -0.02 1.73 16 Total: -1.00 -66.38 312.35 2.96 -63.42 By element: Atomic # 1 Polarization: 20.13 SS G_CDS: 0.27 Total: 20.40 kcal Atomic # 6 Polarization: -26.74 SS G_CDS: 3.86 Total: -22.89 kcal Atomic # 7 Polarization: -87.37 SS G_CDS: -1.06 Total: -88.43 kcal Atomic # 8 Polarization: -20.29 SS G_CDS: -1.83 Total: -22.12 kcal Atomic # 14 Polarization: 47.90 SS G_CDS: 1.73 Total: 49.63 kcal Total: -66.38 2.96 -63.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081676540.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.981 kcal (2) G-P(sol) polarization free energy of solvation -66.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds