Wall clock time and date at job start Sun Mar 29 2020 23:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47428 * 2 1 4 4 H 1.08997 * 109.47118 * 54.41964 * 3 2 1 5 5 C 1.50697 * 109.47327 * 174.42645 * 3 2 1 6 6 H 1.08003 * 120.00298 * 119.99732 * 5 3 2 7 7 C 1.37879 * 120.00232 * 299.99747 * 5 3 2 8 8 N 1.31516 * 119.99431 * 0.02562 * 7 5 3 9 9 Si 1.86788 * 120.00387 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47382 * 89.99904 * 9 7 5 11 11 H 1.48497 * 109.47644 * 210.00057 * 9 7 5 12 12 H 1.48502 * 109.47330 * 330.00071 * 9 7 5 13 13 N 1.46904 * 109.46734 * 294.42546 * 3 2 1 14 14 C 1.46906 * 110.99934 * 152.69710 * 13 3 2 15 15 C 1.52997 * 109.46941 * 175.60290 * 14 13 3 16 16 O 1.42902 * 109.47176 * 65.00441 * 15 14 13 17 17 C 1.42899 * 114.00045 * 180.02562 * 16 15 14 18 18 C 1.54273 * 110.02898 * 267.90375 * 17 16 15 19 19 C 1.54970 * 104.15822 * 217.14007 * 18 17 16 20 20 C 1.54888 * 102.78104 * 37.88459 * 19 18 17 21 21 C 1.53877 * 110.03203 * 150.68757 * 17 16 15 22 22 H 1.09008 * 109.47127 * 60.18832 * 1 2 3 23 23 H 1.08999 * 109.47388 * 180.18723 * 1 2 3 24 24 H 1.08996 * 109.47139 * 300.19131 * 1 2 3 25 25 H 1.09005 * 109.47524 * 239.99542 * 2 1 3 26 26 H 1.08998 * 109.47203 * 119.99465 * 2 1 3 27 27 H 0.97003 * 119.99754 * 180.02562 * 8 7 5 28 28 H 1.00892 * 111.00386 * 28.74213 * 13 3 2 29 29 H 1.08997 * 109.47067 * 295.60618 * 14 13 3 30 30 H 1.08998 * 109.46723 * 55.60617 * 14 13 3 31 31 H 1.09000 * 109.46842 * 184.99548 * 15 14 13 32 32 H 1.08999 * 109.47737 * 304.99820 * 15 14 13 33 33 H 1.08992 * 110.01977 * 29.29236 * 17 16 15 34 34 H 1.09000 * 110.48140 * 335.78305 * 18 17 16 35 35 H 1.08993 * 110.48290 * 98.42653 * 18 17 16 36 36 H 1.08999 * 110.71503 * 279.57086 * 19 18 17 37 37 H 1.08991 * 110.92281 * 156.29520 * 19 18 17 38 38 H 1.08989 * 110.49057 * 203.40771 * 20 19 18 39 39 H 1.08998 * 110.59756 * 80.81924 * 20 19 18 40 40 H 1.08997 * 110.03296 * 238.56086 * 21 17 16 41 41 H 1.08994 * 110.03497 * 359.94707 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5974 1.9844 0.8358 5 6 3.5407 1.4447 0.1380 6 1 4.1533 1.8866 -0.6339 7 6 4.1316 0.8825 1.2497 8 7 3.3856 0.3439 2.1893 9 14 5.9916 0.8859 1.4211 10 1 6.4218 2.1212 2.1241 11 1 6.4190 -0.3025 2.2023 12 1 6.6131 0.8417 0.0731 13 7 1.6633 2.0950 -1.2611 14 6 1.5297 3.5471 -1.0831 15 6 1.2453 4.2027 -2.4359 16 8 -0.0250 3.7628 -2.9208 17 6 -0.3884 4.3188 -4.1860 18 6 -1.2098 5.6084 -3.9801 19 6 -2.2682 5.5683 -5.1113 20 6 -2.6334 4.0650 -5.1858 21 6 -1.2929 3.3380 -4.9525 22 1 -0.3634 0.5109 -0.8917 23 1 -0.3634 -1.0276 0.0034 24 1 -0.3633 0.5168 0.8882 25 1 1.8934 -0.5139 -0.8900 26 1 1.8933 -0.5137 0.8900 27 1 3.8013 -0.0513 2.9716 28 1 0.8149 1.6970 -1.6348 29 1 0.7074 3.7551 -0.3985 30 1 2.4555 3.9494 -0.6718 31 1 1.2342 5.2863 -2.3193 32 1 2.0226 3.9217 -3.1465 33 1 0.5064 4.5354 -4.7693 34 1 -1.6946 5.6000 -3.0038 35 1 -0.5729 6.4868 -4.0833 36 1 -1.8386 5.9086 -6.0535 37 1 -3.1414 6.1654 -4.8487 38 1 -3.0353 3.8182 -6.1684 39 1 -3.3491 3.8051 -4.4058 40 1 -0.8374 3.0792 -5.9084 41 1 -1.4538 2.4375 -4.3599 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082627406.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:01 Heat of formation + Delta-G solvation = -71.256080 kcal Electronic energy + Delta-G solvation = -17805.687980 eV Core-core repulsion = 15105.491258 eV Total energy + Delta-G solvation = -2700.196721 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.89761 -36.63210 -35.46413 -32.48407 -31.22052 -28.83313 -28.38509 -27.11417 -25.76737 -22.78516 -21.17109 -20.81796 -20.27223 -19.43821 -16.84195 -16.24532 -15.80336 -15.24803 -14.65564 -14.62115 -14.24192 -13.68331 -13.41586 -13.08021 -12.64615 -12.37823 -12.17220 -11.85680 -11.40456 -11.21214 -11.19856 -11.19138 -10.99434 -10.88991 -10.71652 -10.71498 -10.56176 -10.45819 -9.89186 -9.58465 -9.50882 -9.23060 -8.98932 -8.28937 -7.10408 -5.91087 -3.95187 3.35094 3.41629 3.46435 3.95020 4.49054 4.51624 4.53876 4.85415 5.21681 5.25872 5.37611 5.38947 5.44553 5.53646 5.57770 5.70069 5.76356 5.80815 5.83501 5.93784 6.04842 6.10393 6.18592 6.21509 6.25184 6.27647 6.47512 6.50787 6.60122 6.94502 7.16079 7.27601 7.55542 7.59351 7.86201 7.99087 8.40448 8.49028 8.88612 9.13049 9.69616 11.14172 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.037256 B = 0.004682 C = 0.004345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.376861 B = 5978.581300 C = 6443.285983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C 0.216 3.784 4 H 0.001 0.999 5 C -0.492 4.492 6 H 0.060 0.940 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.895 3.105 10 H -0.283 1.283 11 H -0.288 1.288 12 H -0.275 1.275 13 N -0.685 5.685 14 C 0.071 3.929 15 C 0.065 3.935 16 O -0.378 6.378 17 C 0.085 3.915 18 C -0.148 4.148 19 C -0.123 4.123 20 C -0.123 4.123 21 C -0.124 4.124 22 H 0.037 0.963 23 H 0.036 0.964 24 H 0.041 0.959 25 H 0.040 0.960 26 H 0.098 0.902 27 H 0.259 0.741 28 H 0.325 0.675 29 H 0.021 0.979 30 H 0.085 0.915 31 H 0.040 0.960 32 H 0.054 0.946 33 H 0.059 0.941 34 H 0.076 0.924 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.666 8.136 -12.131 17.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.164 4.164 3 C 0.109 3.891 4 H 0.019 0.981 5 C -0.531 4.531 6 H 0.079 0.921 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.723 3.277 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.199 1.199 13 N -0.317 5.317 14 C -0.059 4.059 15 C -0.011 4.011 16 O -0.297 6.297 17 C 0.027 3.973 18 C -0.186 4.186 19 C -0.161 4.161 20 C -0.160 4.160 21 C -0.162 4.162 22 H 0.056 0.944 23 H 0.055 0.945 24 H 0.060 0.940 25 H 0.058 0.942 26 H 0.117 0.883 27 H 0.068 0.932 28 H 0.143 0.857 29 H 0.039 0.961 30 H 0.103 0.897 31 H 0.058 0.942 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.095 0.905 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -9.099 7.945 -12.075 17.080 hybrid contribution 0.369 0.253 0.584 0.736 sum -8.730 8.197 -11.491 16.597 Atomic orbital electron populations 1.21877 0.99561 0.99452 0.99845 1.21759 0.91291 1.00390 1.02925 1.19154 0.95316 0.90064 0.84557 0.98122 1.21242 0.91379 1.36300 1.04138 0.92135 1.24970 0.98038 0.95720 0.95912 1.69883 1.34620 1.39624 1.09570 0.86554 0.85891 0.77285 0.77978 1.20946 1.21405 1.19948 1.60686 1.37938 1.01332 1.31755 1.21833 0.99964 0.91349 0.92804 1.22734 0.84675 0.96613 0.97116 1.87960 1.36939 1.69582 1.35225 1.22700 0.96658 0.92449 0.85504 1.22930 0.98006 0.97822 0.99820 1.22434 0.98549 0.96632 0.98459 1.22327 0.97261 0.95003 1.01438 1.22222 0.95032 0.99232 0.99694 0.94365 0.94521 0.93972 0.94152 0.88341 0.93159 0.85741 0.96132 0.89724 0.94158 0.92730 0.92253 0.90521 0.91823 0.91636 0.91606 0.91749 0.91442 0.91289 0.90158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.07 9.75 37.16 0.36 -2.71 16 2 C -0.13 -3.06 5.34 -26.73 -0.14 -3.20 16 3 C 0.22 5.57 2.02 -68.86 -0.14 5.43 16 4 H 0.00 0.03 7.82 -51.93 -0.41 -0.37 16 5 C -0.49 -13.82 8.66 -34.44 -0.30 -14.12 16 6 H 0.06 1.72 7.81 -52.48 -0.41 1.31 16 7 C 0.05 1.51 5.29 -17.82 -0.09 1.41 16 8 N -0.90 -25.92 11.29 55.43 0.63 -25.29 16 9 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 13 N -0.68 -15.27 6.28 -107.95 -0.68 -15.95 16 14 C 0.07 1.39 5.86 -3.82 -0.02 1.36 16 15 C 0.07 1.05 6.12 37.16 0.23 1.28 16 16 O -0.38 -6.03 9.49 -35.23 -0.33 -6.36 16 17 C 0.09 1.07 3.38 -25.61 -0.09 0.98 16 18 C -0.15 -1.60 6.57 -25.02 -0.16 -1.76 16 19 C -0.12 -1.10 6.91 -24.70 -0.17 -1.27 16 20 C -0.12 -1.16 6.83 -25.07 -0.17 -1.33 16 21 C -0.12 -1.39 6.61 -25.61 -0.17 -1.56 16 22 H 0.04 0.73 6.47 -51.92 -0.34 0.39 16 23 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.10 2.68 5.94 -51.93 -0.31 2.37 16 27 H 0.26 7.14 8.31 -40.82 -0.34 6.81 16 28 H 0.32 6.92 6.16 -39.30 -0.24 6.68 16 29 H 0.02 0.41 8.13 -51.93 -0.42 -0.01 16 30 H 0.08 1.74 8.02 -51.93 -0.42 1.32 16 31 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.05 0.89 8.10 -51.93 -0.42 0.47 16 33 H 0.06 0.71 7.81 -51.93 -0.41 0.30 16 34 H 0.08 0.91 8.08 -51.93 -0.42 0.49 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.52 8.14 -51.94 -0.42 0.09 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.08 1.01 7.95 -51.93 -0.41 0.60 16 LS Contribution 323.30 15.07 4.87 4.87 Total: -1.00 -28.97 323.30 -8.97 -37.93 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -7.56 Total: 3.59 kcal Atomic # 6 Polarization: -14.62 SS G_CDS: -0.87 Total: -15.49 kcal Atomic # 7 Polarization: -41.19 SS G_CDS: -0.05 Total: -41.24 kcal Atomic # 8 Polarization: -6.03 SS G_CDS: -0.33 Total: -6.36 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -28.97 -8.97 -37.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082627406.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.321 kcal (2) G-P(sol) polarization free energy of solvation -28.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds