Wall clock time and date at job start Sun Mar 29 2020 23:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47428 * 2 1 4 4 H 1.08997 * 109.47118 * 54.41964 * 3 2 1 5 5 C 1.50697 * 109.47327 * 174.42645 * 3 2 1 6 6 H 1.08003 * 120.00298 * 119.99732 * 5 3 2 7 7 C 1.37879 * 120.00232 * 299.99747 * 5 3 2 8 8 N 1.31516 * 119.99431 * 0.02562 * 7 5 3 9 9 Si 1.86788 * 120.00387 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47382 * 89.99904 * 9 7 5 11 11 H 1.48497 * 109.47644 * 210.00057 * 9 7 5 12 12 H 1.48502 * 109.47330 * 330.00071 * 9 7 5 13 13 N 1.46904 * 109.46734 * 294.42546 * 3 2 1 14 14 C 1.46906 * 110.99934 * 152.69710 * 13 3 2 15 15 C 1.52997 * 109.46941 * 175.60290 * 14 13 3 16 16 O 1.42902 * 109.47176 * 65.00441 * 15 14 13 17 17 C 1.42899 * 114.00045 * 180.02562 * 16 15 14 18 18 C 1.54273 * 110.02898 * 267.90375 * 17 16 15 19 19 C 1.54970 * 104.15822 * 217.14007 * 18 17 16 20 20 C 1.54888 * 102.78104 * 37.88459 * 19 18 17 21 21 C 1.53877 * 110.03203 * 150.68757 * 17 16 15 22 22 H 1.09008 * 109.47127 * 60.18832 * 1 2 3 23 23 H 1.08999 * 109.47388 * 180.18723 * 1 2 3 24 24 H 1.08996 * 109.47139 * 300.19131 * 1 2 3 25 25 H 1.09005 * 109.47524 * 239.99542 * 2 1 3 26 26 H 1.08998 * 109.47203 * 119.99465 * 2 1 3 27 27 H 0.97003 * 119.99754 * 180.02562 * 8 7 5 28 28 H 1.00892 * 111.00386 * 28.74213 * 13 3 2 29 29 H 1.08997 * 109.47067 * 295.60618 * 14 13 3 30 30 H 1.08998 * 109.46723 * 55.60617 * 14 13 3 31 31 H 1.09000 * 109.46842 * 184.99548 * 15 14 13 32 32 H 1.08999 * 109.47737 * 304.99820 * 15 14 13 33 33 H 1.08992 * 110.01977 * 29.29236 * 17 16 15 34 34 H 1.09000 * 110.48140 * 335.78305 * 18 17 16 35 35 H 1.08993 * 110.48290 * 98.42653 * 18 17 16 36 36 H 1.08999 * 110.71503 * 279.57086 * 19 18 17 37 37 H 1.08991 * 110.92281 * 156.29520 * 19 18 17 38 38 H 1.08989 * 110.49057 * 203.40771 * 20 19 18 39 39 H 1.08998 * 110.59756 * 80.81924 * 20 19 18 40 40 H 1.08997 * 110.03296 * 238.56086 * 21 17 16 41 41 H 1.08994 * 110.03497 * 359.94707 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5974 1.9844 0.8358 5 6 3.5407 1.4447 0.1380 6 1 4.1533 1.8866 -0.6339 7 6 4.1316 0.8825 1.2497 8 7 3.3856 0.3439 2.1893 9 14 5.9916 0.8859 1.4211 10 1 6.4218 2.1212 2.1241 11 1 6.4190 -0.3025 2.2023 12 1 6.6131 0.8417 0.0731 13 7 1.6633 2.0950 -1.2611 14 6 1.5297 3.5471 -1.0831 15 6 1.2453 4.2027 -2.4359 16 8 -0.0250 3.7628 -2.9208 17 6 -0.3884 4.3188 -4.1860 18 6 -1.2098 5.6084 -3.9801 19 6 -2.2682 5.5683 -5.1113 20 6 -2.6334 4.0650 -5.1858 21 6 -1.2929 3.3380 -4.9525 22 1 -0.3634 0.5109 -0.8917 23 1 -0.3634 -1.0276 0.0034 24 1 -0.3633 0.5168 0.8882 25 1 1.8934 -0.5139 -0.8900 26 1 1.8933 -0.5137 0.8900 27 1 3.8013 -0.0513 2.9716 28 1 0.8149 1.6970 -1.6348 29 1 0.7074 3.7551 -0.3985 30 1 2.4555 3.9494 -0.6718 31 1 1.2342 5.2863 -2.3193 32 1 2.0226 3.9217 -3.1465 33 1 0.5064 4.5354 -4.7693 34 1 -1.6946 5.6000 -3.0038 35 1 -0.5729 6.4868 -4.0833 36 1 -1.8386 5.9086 -6.0535 37 1 -3.1414 6.1654 -4.8487 38 1 -3.0353 3.8182 -6.1684 39 1 -3.3491 3.8051 -4.4058 40 1 -0.8374 3.0792 -5.9084 41 1 -1.4538 2.4375 -4.3599 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082627406.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:00 Heat of formation + Delta-G solvation = -88.653092 kcal Electronic energy + Delta-G solvation = -17806.442371 eV Core-core repulsion = 15105.491258 eV Total energy + Delta-G solvation = -2700.951112 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.93896 -38.25403 -36.76919 -34.42147 -33.04421 -29.96168 -29.56330 -28.38385 -27.53643 -24.68741 -22.71400 -21.59766 -21.47801 -21.14151 -18.39335 -17.90993 -16.91110 -16.81861 -16.28769 -15.95235 -15.54974 -15.44336 -14.72288 -14.22817 -14.19036 -13.82271 -13.77678 -13.30814 -13.01503 -12.87193 -12.69274 -12.55063 -12.27172 -12.20718 -11.98496 -11.95919 -11.90855 -11.54571 -11.46307 -11.46023 -11.28219 -11.03551 -10.42566 -10.35357 -8.99104 -8.05511 -6.18221 1.42291 1.43402 1.54500 2.45103 2.81981 3.19088 3.64316 3.70199 3.74189 4.05876 4.23253 4.37469 4.40646 4.48907 4.55213 4.56143 4.57488 4.62983 4.70728 4.73652 4.82223 4.89544 4.97310 5.03876 5.07185 5.11225 5.20027 5.23123 5.26331 5.32753 5.36368 5.47438 5.58801 5.75196 5.89722 6.36442 6.42629 6.53887 6.95399 7.01405 7.50978 8.97917 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.037256 B = 0.004682 C = 0.004345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.376861 B = 5978.581300 C = 6443.285983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.121 4.121 3 C 0.222 3.778 4 H -0.033 1.033 5 C -0.513 4.513 6 H 0.051 0.949 7 C 0.008 3.992 8 N -0.921 5.921 9 Si 0.959 3.041 10 H -0.277 1.277 11 H -0.283 1.283 12 H -0.271 1.271 13 N -0.684 5.684 14 C 0.070 3.930 15 C 0.078 3.922 16 O -0.399 6.399 17 C 0.075 3.925 18 C -0.147 4.147 19 C -0.117 4.117 20 C -0.121 4.121 21 C -0.126 4.126 22 H 0.052 0.948 23 H 0.059 0.941 24 H 0.034 0.966 25 H 0.036 0.964 26 H 0.069 0.931 27 H 0.260 0.740 28 H 0.331 0.669 29 H 0.014 0.986 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.054 0.946 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.060 0.940 40 H 0.081 0.919 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.937 8.857 -13.669 19.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.159 4.159 3 C 0.113 3.887 4 H -0.016 1.016 5 C -0.551 4.551 6 H 0.069 0.931 7 C -0.190 4.190 8 N -0.561 5.561 9 Si 0.785 3.215 10 H -0.203 1.203 11 H -0.208 1.208 12 H -0.195 1.195 13 N -0.316 5.316 14 C -0.060 4.060 15 C 0.002 3.998 16 O -0.319 6.319 17 C 0.017 3.983 18 C -0.185 4.185 19 C -0.155 4.155 20 C -0.158 4.158 21 C -0.164 4.164 22 H 0.071 0.929 23 H 0.078 0.922 24 H 0.054 0.946 25 H 0.055 0.945 26 H 0.088 0.912 27 H 0.069 0.931 28 H 0.149 0.851 29 H 0.032 0.968 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.101 0.899 39 H 0.079 0.921 40 H 0.100 0.900 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.386 8.677 -13.630 18.686 hybrid contribution 0.419 0.042 1.044 1.126 sum -8.967 8.719 -12.586 17.743 Atomic orbital electron populations 1.21736 0.96470 1.01138 1.00201 1.21597 0.94068 0.99066 1.01198 1.18964 0.94212 0.90712 0.84786 1.01578 1.21484 0.92659 1.36713 1.04285 0.93075 1.25727 1.02534 0.95226 0.95513 1.70015 1.36351 1.39891 1.09881 0.85538 0.80434 0.77499 0.78018 1.20252 1.20841 1.19534 1.60613 1.38371 1.02784 1.29849 1.21844 0.99095 0.89888 0.95154 1.22498 0.85064 0.97449 0.94818 1.87924 1.36490 1.70419 1.37031 1.23000 0.97472 0.93558 0.84229 1.22910 0.98428 0.97237 0.99912 1.22438 0.98381 0.96367 0.98286 1.22332 0.96079 0.95170 1.02229 1.22266 0.96005 0.98388 0.99721 0.92901 0.92157 0.94644 0.94523 0.91237 0.93060 0.85090 0.96775 0.91102 0.91699 0.92802 0.91541 0.91957 0.90798 0.90221 0.90502 0.89949 0.92106 0.90006 0.92030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.57 9.75 71.98 0.70 -4.87 16 2 C -0.12 -5.98 5.34 30.59 0.16 -5.81 16 3 C 0.22 11.67 2.02 44.17 0.09 11.76 16 4 H -0.03 -1.95 7.82 -2.39 -0.02 -1.97 16 5 C -0.51 -29.35 8.66 25.60 0.22 -29.13 16 6 H 0.05 2.95 7.81 -2.91 -0.02 2.93 16 7 C 0.01 0.45 5.29 84.65 0.45 0.90 16 8 N -0.92 -54.10 11.29 21.45 0.24 -53.86 16 9 Si 0.96 44.77 29.54 68.60 2.03 46.80 16 10 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 11 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 12 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 13 N -0.68 -30.81 6.28 -495.45 -3.11 -33.92 16 14 C 0.07 2.78 5.86 86.30 0.51 3.28 16 15 C 0.08 2.45 6.12 71.98 0.44 2.89 16 16 O -0.40 -12.38 9.49 -148.98 -1.41 -13.79 16 17 C 0.07 1.76 3.38 31.32 0.11 1.87 16 18 C -0.15 -2.90 6.57 31.70 0.21 -2.69 16 19 C -0.12 -1.78 6.91 31.91 0.22 -1.56 16 20 C -0.12 -2.01 6.83 31.67 0.22 -1.79 16 21 C -0.13 -2.64 6.61 31.32 0.21 -2.43 16 22 H 0.05 1.96 6.47 -2.38 -0.02 1.94 16 23 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 24 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.04 1.79 8.14 -2.38 -0.02 1.77 16 26 H 0.07 3.86 5.94 -2.39 -0.01 3.85 16 27 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 28 H 0.33 14.07 6.16 -89.70 -0.55 13.51 16 29 H 0.01 0.57 8.13 -2.39 -0.02 0.55 16 30 H 0.07 2.97 8.02 -2.39 -0.02 2.95 16 31 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.05 1.69 8.10 -2.39 -0.02 1.67 16 33 H 0.07 1.46 7.81 -2.39 -0.02 1.44 16 34 H 0.06 1.41 8.08 -2.39 -0.02 1.39 16 35 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.06 1.51 7.95 -2.39 -0.02 1.49 16 Total: -1.00 -62.38 323.30 1.69 -60.69 By element: Atomic # 1 Polarization: 21.25 SS G_CDS: 0.42 Total: 21.66 kcal Atomic # 6 Polarization: -31.11 SS G_CDS: 3.53 Total: -27.58 kcal Atomic # 7 Polarization: -84.91 SS G_CDS: -2.87 Total: -87.77 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: -1.41 Total: -13.79 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -62.38 1.69 -60.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082627406.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.967 kcal (2) G-P(sol) polarization free energy of solvation -62.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds