Wall clock time and date at job start Sun Mar 29 2020 23:05:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.47013 * 2 1 4 4 H 1.08997 * 109.46989 * 175.22326 * 3 2 1 5 5 C 1.50697 * 109.47320 * 55.22119 * 3 2 1 6 6 H 1.08000 * 120.00247 * 245.72520 * 5 3 2 7 7 C 1.37881 * 119.99913 * 65.72420 * 5 3 2 8 8 N 1.31508 * 119.99833 * 5.51527 * 7 5 3 9 9 Si 1.86801 * 119.99965 * 185.51670 * 7 5 3 10 10 H 1.48504 * 109.47086 * 179.97438 * 9 7 5 11 11 H 1.48496 * 109.47017 * 300.00093 * 9 7 5 12 12 H 1.48502 * 109.47182 * 60.00206 * 9 7 5 13 13 N 1.46903 * 109.46867 * 295.22510 * 3 2 1 14 14 C 1.46905 * 110.99445 * 279.79527 * 13 3 2 15 15 C 1.53007 * 109.46536 * 184.98157 * 14 13 3 16 16 O 1.42891 * 109.47524 * 65.00191 * 15 14 13 17 17 C 1.42895 * 114.00097 * 179.97438 * 16 15 14 18 18 C 1.54271 * 110.03333 * 267.90607 * 17 16 15 19 19 C 1.54960 * 104.15982 * 217.13633 * 18 17 16 20 20 C 1.54895 * 102.78028 * 37.88753 * 19 18 17 21 21 C 1.53879 * 110.03480 * 150.68865 * 17 16 15 22 22 H 1.09001 * 109.46980 * 184.94668 * 1 2 3 23 23 H 1.09002 * 109.46960 * 304.94954 * 1 2 3 24 24 H 1.09001 * 109.46923 * 64.94609 * 1 2 3 25 25 H 1.08995 * 109.47200 * 240.00149 * 2 1 3 26 26 H 1.08995 * 109.46933 * 119.99806 * 2 1 3 27 27 H 0.96999 * 120.00238 * 355.15072 * 8 7 5 28 28 H 1.00901 * 111.00017 * 155.84838 * 13 3 2 29 29 H 1.09000 * 109.47276 * 304.97760 * 14 13 3 30 30 H 1.08992 * 109.47398 * 64.97883 * 14 13 3 31 31 H 1.09005 * 109.46621 * 185.00025 * 15 14 13 32 32 H 1.09001 * 109.46734 * 304.99531 * 15 14 13 33 33 H 1.08999 * 110.01907 * 29.29471 * 17 16 15 34 34 H 1.09004 * 110.48114 * 335.77883 * 18 17 16 35 35 H 1.08995 * 110.48316 * 98.42442 * 18 17 16 36 36 H 1.09002 * 110.72396 * 279.57338 * 19 18 17 37 37 H 1.09005 * 110.92605 * 156.29382 * 19 18 17 38 38 H 1.09005 * 110.48554 * 203.40636 * 20 19 18 39 39 H 1.08994 * 110.59826 * 80.81403 * 20 19 18 40 40 H 1.09001 * 110.03055 * 238.56953 * 21 17 16 41 41 H 1.08998 * 110.02865 * 359.95245 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1266 1.4437 0.0856 5 6 1.4434 2.1863 1.1670 6 1 0.7591 3.0037 0.9935 7 6 1.7711 1.8233 2.4561 8 7 2.6853 0.9019 2.6675 9 14 0.9165 2.6403 3.9024 10 1 1.4437 2.0772 5.1714 11 1 1.1710 4.1029 3.8658 12 1 -0.5449 2.3899 3.8197 13 7 1.6467 2.1009 -1.2530 14 6 2.5540 1.7329 -2.3482 15 6 2.1896 2.5307 -3.6020 16 8 2.4246 3.9205 -3.3673 17 6 2.1151 4.7587 -4.4825 18 6 3.3714 4.9641 -5.3539 19 6 3.2678 6.4360 -5.8272 20 6 2.6979 7.1575 -4.5806 21 6 1.6867 6.1526 -3.9913 22 1 -0.3633 -1.0239 0.0886 23 1 -0.3633 0.5887 0.8424 24 1 -0.3633 0.4352 -0.9310 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 3.0784 0.4277 1.9181 28 1 1.6064 3.1025 -1.1380 29 1 3.5810 1.9575 -2.0604 30 1 2.4597 0.6670 -2.5556 31 1 2.8035 2.1944 -4.4376 32 1 1.1370 2.3749 -3.8385 33 1 1.3181 4.3108 -5.0761 34 1 4.2746 4.8167 -4.7618 35 1 3.3586 4.2863 -6.2074 36 1 2.5826 6.5227 -6.6705 37 1 4.2498 6.8315 -6.0871 38 1 2.1944 8.0798 -4.8706 39 1 3.4909 7.3663 -3.8625 40 1 0.6822 6.3815 -4.3473 41 1 1.7141 6.1894 -2.9023 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082627407.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:03 Heat of formation + Delta-G solvation = -74.886821 kcal Electronic energy + Delta-G solvation = -17875.319338 eV Core-core repulsion = 15174.965176 eV Total energy + Delta-G solvation = -2700.354162 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.96289 -36.81303 -35.62968 -32.77997 -30.77984 -28.87262 -28.50572 -27.15269 -24.94218 -23.41439 -21.58703 -20.84364 -20.30098 -19.18494 -16.92837 -16.90376 -15.80240 -15.22796 -14.74611 -14.27957 -14.02334 -13.69610 -13.43728 -13.30862 -12.88242 -12.45356 -12.10977 -11.99801 -11.41706 -11.30720 -11.21027 -11.19219 -11.02237 -10.81525 -10.73668 -10.72310 -10.48359 -10.07721 -10.02642 -9.82278 -9.65633 -9.32833 -8.45698 -8.23548 -7.27614 -6.28129 -3.99080 3.47386 3.49420 3.67687 3.85978 4.48993 4.51606 4.56512 4.83468 5.13410 5.17200 5.35789 5.41536 5.44169 5.48155 5.51921 5.62678 5.66296 5.74568 5.78738 5.84680 5.92255 6.05449 6.17041 6.20314 6.26502 6.34628 6.38851 6.46162 6.66117 6.99926 7.12561 7.31027 7.47429 7.52499 7.61716 7.96565 8.21355 8.61237 8.68997 8.95205 9.71669 11.08565 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.027502 B = 0.005108 C = 0.004597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.878901 B = 5479.874164 C = 6089.890729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.107 4.107 3 C 0.202 3.798 4 H -0.010 1.010 5 C -0.587 4.587 6 H 0.053 0.947 7 C 0.021 3.979 8 N -0.914 5.914 9 Si 1.067 2.933 10 H -0.284 1.284 11 H -0.289 1.289 12 H -0.288 1.288 13 N -0.677 5.677 14 C 0.060 3.940 15 C 0.065 3.935 16 O -0.376 6.376 17 C 0.086 3.914 18 C -0.148 4.148 19 C -0.123 4.123 20 C -0.123 4.123 21 C -0.125 4.125 22 H 0.016 0.984 23 H 0.063 0.937 24 H 0.044 0.956 25 H 0.019 0.981 26 H 0.057 0.943 27 H 0.270 0.730 28 H 0.341 0.659 29 H 0.025 0.975 30 H 0.074 0.926 31 H 0.041 0.959 32 H 0.054 0.946 33 H 0.059 0.941 34 H 0.076 0.924 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.553 7.500 -15.654 17.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.146 4.146 3 C 0.094 3.906 4 H 0.008 0.992 5 C -0.626 4.626 6 H 0.071 0.929 7 C -0.183 4.183 8 N -0.551 5.551 9 Si 0.895 3.105 10 H -0.209 1.209 11 H -0.216 1.216 12 H -0.214 1.214 13 N -0.309 5.309 14 C -0.070 4.070 15 C -0.011 4.011 16 O -0.295 6.295 17 C 0.028 3.972 18 C -0.186 4.186 19 C -0.160 4.160 20 C -0.160 4.160 21 C -0.163 4.163 22 H 0.035 0.965 23 H 0.082 0.918 24 H 0.063 0.937 25 H 0.037 0.963 26 H 0.075 0.925 27 H 0.082 0.918 28 H 0.160 0.840 29 H 0.043 0.957 30 H 0.092 0.908 31 H 0.060 0.940 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.095 0.905 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.977 7.154 -13.971 15.727 hybrid contribution 0.772 0.185 -1.782 1.951 sum -0.204 7.339 -15.753 17.380 Atomic orbital electron populations 1.21451 0.96467 0.97762 1.02011 1.21523 0.96407 0.98444 0.98204 1.19268 0.93068 0.91575 0.86719 0.99248 1.21917 1.30382 1.18542 0.91739 0.92862 1.25701 0.95574 0.96981 1.00061 1.70790 1.24350 1.24270 1.35699 0.83575 0.75670 0.75467 0.75747 1.20934 1.21600 1.21415 1.60627 1.50069 1.14109 1.06094 1.21949 0.95264 0.98137 0.91639 1.22654 0.99536 0.81321 0.97629 1.87991 1.87266 1.16971 1.37259 1.22718 0.95484 0.91463 0.87583 1.22929 0.99600 0.96715 0.99346 1.22435 1.00867 0.95082 0.97659 1.22331 0.98744 0.97783 0.97186 1.22227 0.98653 0.92789 1.02582 0.96486 0.91785 0.93674 0.96262 0.92462 0.91780 0.84046 0.95658 0.90826 0.94033 0.92803 0.92270 0.90490 0.91857 0.91630 0.91560 0.91681 0.91358 0.91246 0.89982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.70 9.53 37.16 0.35 -2.35 16 2 C -0.11 -2.58 5.47 -26.73 -0.15 -2.72 16 3 C 0.20 5.15 1.92 -68.86 -0.13 5.02 16 4 H -0.01 -0.28 7.31 -51.93 -0.38 -0.66 16 5 C -0.59 -16.37 6.92 -34.44 -0.24 -16.61 16 6 H 0.05 1.50 7.75 -52.49 -0.41 1.09 16 7 C 0.02 0.60 5.28 -17.82 -0.09 0.50 16 8 N -0.91 -27.51 13.20 55.43 0.73 -26.77 16 9 Si 1.07 25.38 29.91 -169.99 -5.08 20.30 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 13 N -0.68 -14.92 5.86 -107.94 -0.63 -15.55 16 14 C 0.06 1.12 5.93 -3.82 -0.02 1.10 16 15 C 0.07 1.00 6.10 37.16 0.23 1.23 16 16 O -0.38 -6.05 9.35 -35.23 -0.33 -6.38 16 17 C 0.09 1.08 3.38 -25.61 -0.09 0.99 16 18 C -0.15 -1.61 6.56 -25.03 -0.16 -1.77 16 19 C -0.12 -1.12 6.91 -24.70 -0.17 -1.29 16 20 C -0.12 -1.21 6.83 -25.07 -0.17 -1.38 16 21 C -0.12 -1.45 6.61 -25.61 -0.17 -1.62 16 22 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 23 H 0.06 1.58 6.89 -51.93 -0.36 1.22 16 24 H 0.04 0.97 7.89 -51.93 -0.41 0.56 16 25 H 0.02 0.42 7.13 -51.93 -0.37 0.05 16 26 H 0.06 1.49 6.18 -51.93 -0.32 1.17 16 27 H 0.27 8.12 5.62 -40.82 -0.23 7.89 16 28 H 0.34 7.79 7.82 -39.29 -0.31 7.48 16 29 H 0.03 0.50 7.95 -51.93 -0.41 0.09 16 30 H 0.07 1.32 7.20 -51.93 -0.37 0.95 16 31 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.05 0.81 8.10 -51.93 -0.42 0.39 16 33 H 0.06 0.69 7.81 -51.93 -0.41 0.29 16 34 H 0.08 0.93 8.08 -51.93 -0.42 0.51 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.08 1.10 7.95 -51.93 -0.41 0.69 16 LS Contribution 319.91 15.07 4.82 4.82 Total: -1.00 -29.67 319.91 -8.71 -38.38 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -7.40 Total: 4.10 kcal Atomic # 6 Polarization: -18.08 SS G_CDS: -0.81 Total: -18.90 kcal Atomic # 7 Polarization: -42.42 SS G_CDS: 0.10 Total: -42.32 kcal Atomic # 8 Polarization: -6.05 SS G_CDS: -0.33 Total: -6.38 kcal Atomic # 14 Polarization: 25.38 SS G_CDS: -5.08 Total: 20.30 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.67 -8.71 -38.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082627407.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.502 kcal (2) G-P(sol) polarization free energy of solvation -29.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds