Wall clock time and date at job start Sun Mar 29 2020 23:05:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.47013 * 2 1 4 4 H 1.08997 * 109.46989 * 175.22326 * 3 2 1 5 5 C 1.50697 * 109.47320 * 55.22119 * 3 2 1 6 6 H 1.08000 * 120.00247 * 245.72520 * 5 3 2 7 7 C 1.37881 * 119.99913 * 65.72420 * 5 3 2 8 8 N 1.31508 * 119.99833 * 5.51527 * 7 5 3 9 9 Si 1.86801 * 119.99965 * 185.51670 * 7 5 3 10 10 H 1.48504 * 109.47086 * 179.97438 * 9 7 5 11 11 H 1.48496 * 109.47017 * 300.00093 * 9 7 5 12 12 H 1.48502 * 109.47182 * 60.00206 * 9 7 5 13 13 N 1.46903 * 109.46867 * 295.22510 * 3 2 1 14 14 C 1.46905 * 110.99445 * 279.79527 * 13 3 2 15 15 C 1.53007 * 109.46536 * 184.98157 * 14 13 3 16 16 O 1.42891 * 109.47524 * 65.00191 * 15 14 13 17 17 C 1.42895 * 114.00097 * 179.97438 * 16 15 14 18 18 C 1.54271 * 110.03333 * 267.90607 * 17 16 15 19 19 C 1.54960 * 104.15982 * 217.13633 * 18 17 16 20 20 C 1.54895 * 102.78028 * 37.88753 * 19 18 17 21 21 C 1.53879 * 110.03480 * 150.68865 * 17 16 15 22 22 H 1.09001 * 109.46980 * 184.94668 * 1 2 3 23 23 H 1.09002 * 109.46960 * 304.94954 * 1 2 3 24 24 H 1.09001 * 109.46923 * 64.94609 * 1 2 3 25 25 H 1.08995 * 109.47200 * 240.00149 * 2 1 3 26 26 H 1.08995 * 109.46933 * 119.99806 * 2 1 3 27 27 H 0.96999 * 120.00238 * 355.15072 * 8 7 5 28 28 H 1.00901 * 111.00017 * 155.84838 * 13 3 2 29 29 H 1.09000 * 109.47276 * 304.97760 * 14 13 3 30 30 H 1.08992 * 109.47398 * 64.97883 * 14 13 3 31 31 H 1.09005 * 109.46621 * 185.00025 * 15 14 13 32 32 H 1.09001 * 109.46734 * 304.99531 * 15 14 13 33 33 H 1.08999 * 110.01907 * 29.29471 * 17 16 15 34 34 H 1.09004 * 110.48114 * 335.77883 * 18 17 16 35 35 H 1.08995 * 110.48316 * 98.42442 * 18 17 16 36 36 H 1.09002 * 110.72396 * 279.57338 * 19 18 17 37 37 H 1.09005 * 110.92605 * 156.29382 * 19 18 17 38 38 H 1.09005 * 110.48554 * 203.40636 * 20 19 18 39 39 H 1.08994 * 110.59826 * 80.81403 * 20 19 18 40 40 H 1.09001 * 110.03055 * 238.56953 * 21 17 16 41 41 H 1.08998 * 110.02865 * 359.95245 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1266 1.4437 0.0856 5 6 1.4434 2.1863 1.1670 6 1 0.7591 3.0037 0.9935 7 6 1.7711 1.8233 2.4561 8 7 2.6853 0.9019 2.6675 9 14 0.9165 2.6403 3.9024 10 1 1.4437 2.0772 5.1714 11 1 1.1710 4.1029 3.8658 12 1 -0.5449 2.3899 3.8197 13 7 1.6467 2.1009 -1.2530 14 6 2.5540 1.7329 -2.3482 15 6 2.1896 2.5307 -3.6020 16 8 2.4246 3.9205 -3.3673 17 6 2.1151 4.7587 -4.4825 18 6 3.3714 4.9641 -5.3539 19 6 3.2678 6.4360 -5.8272 20 6 2.6979 7.1575 -4.5806 21 6 1.6867 6.1526 -3.9913 22 1 -0.3633 -1.0239 0.0886 23 1 -0.3633 0.5887 0.8424 24 1 -0.3633 0.4352 -0.9310 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 3.0784 0.4277 1.9181 28 1 1.6064 3.1025 -1.1380 29 1 3.5810 1.9575 -2.0604 30 1 2.4597 0.6670 -2.5556 31 1 2.8035 2.1944 -4.4376 32 1 1.1370 2.3749 -3.8385 33 1 1.3181 4.3108 -5.0761 34 1 4.2746 4.8167 -4.7618 35 1 3.3586 4.2863 -6.2074 36 1 2.5826 6.5227 -6.6705 37 1 4.2498 6.8315 -6.0871 38 1 2.1944 8.0798 -4.8706 39 1 3.4909 7.3663 -3.8625 40 1 0.6822 6.3815 -4.3473 41 1 1.7141 6.1894 -2.9023 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082627407.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:03 Heat of formation + Delta-G solvation = -92.987520 kcal Electronic energy + Delta-G solvation = -17876.104243 eV Core-core repulsion = 15174.965176 eV Total energy + Delta-G solvation = -2701.139067 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.01095 -38.48911 -36.91247 -34.62733 -32.70475 -30.09415 -29.60451 -28.27570 -26.88172 -25.39225 -23.09898 -21.63691 -21.24326 -21.14709 -18.97339 -18.00608 -16.84934 -16.50197 -16.22743 -15.77138 -15.62744 -15.53503 -15.06769 -14.32665 -14.26617 -13.92660 -13.77303 -13.51038 -13.10730 -12.83634 -12.59381 -12.35955 -12.26265 -12.02839 -11.98298 -11.94977 -11.88576 -11.71163 -11.55545 -11.50142 -11.45355 -10.59306 -10.43772 -10.35708 -9.14225 -8.55553 -6.27130 1.54261 1.61931 1.80809 2.58580 2.75886 3.23869 3.50725 3.65465 3.69091 4.00969 4.14383 4.31004 4.32946 4.36601 4.47487 4.51770 4.55261 4.58095 4.63972 4.73682 4.78388 4.83972 4.85676 4.97085 5.03088 5.04850 5.15835 5.20198 5.21723 5.28448 5.38614 5.43612 5.52191 5.70970 5.90813 6.11225 6.39250 6.50312 6.64040 6.82633 7.52055 8.81505 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.027502 B = 0.005108 C = 0.004597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.878901 B = 5479.874164 C = 6089.890729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.101 4.101 3 C 0.204 3.796 4 H -0.048 1.048 5 C -0.593 4.593 6 H 0.047 0.953 7 C -0.026 4.026 8 N -0.938 5.938 9 Si 1.111 2.889 10 H -0.286 1.286 11 H -0.275 1.275 12 H -0.270 1.270 13 N -0.670 5.670 14 C 0.059 3.941 15 C 0.075 3.925 16 O -0.405 6.405 17 C 0.077 3.923 18 C -0.147 4.147 19 C -0.116 4.116 20 C -0.122 4.122 21 C -0.128 4.128 22 H 0.041 0.959 23 H 0.039 0.961 24 H 0.054 0.946 25 H 0.038 0.962 26 H 0.032 0.968 27 H 0.259 0.741 28 H 0.335 0.665 29 H 0.007 0.993 30 H 0.083 0.917 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.058 0.942 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.083 0.917 39 H 0.056 0.944 40 H 0.084 0.916 41 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.668 8.179 -17.352 19.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.140 4.140 3 C 0.095 3.905 4 H -0.030 1.030 5 C -0.632 4.632 6 H 0.065 0.935 7 C -0.224 4.224 8 N -0.576 5.576 9 Si 0.934 3.066 10 H -0.212 1.212 11 H -0.200 1.200 12 H -0.195 1.195 13 N -0.301 5.301 14 C -0.071 4.071 15 C -0.001 4.001 16 O -0.325 6.325 17 C 0.019 3.981 18 C -0.185 4.185 19 C -0.154 4.154 20 C -0.160 4.160 21 C -0.165 4.165 22 H 0.060 0.940 23 H 0.058 0.942 24 H 0.073 0.927 25 H 0.057 0.943 26 H 0.050 0.950 27 H 0.070 0.930 28 H 0.152 0.848 29 H 0.026 0.974 30 H 0.101 0.899 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.077 0.923 35 H 0.096 0.904 36 H 0.101 0.899 37 H 0.095 0.905 38 H 0.101 0.899 39 H 0.075 0.925 40 H 0.103 0.897 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.094 7.838 -15.707 17.678 hybrid contribution 1.148 -0.012 -1.326 1.754 sum -0.946 7.825 -17.033 18.769 Atomic orbital electron populations 1.21330 0.94938 0.98990 1.01391 1.21410 0.97612 0.97102 0.97903 1.19139 0.90663 0.92795 0.87869 1.03042 1.22175 1.29847 1.18333 0.92806 0.93469 1.27054 0.95419 0.96887 1.03087 1.70902 1.25880 1.25628 1.35237 0.83004 0.75604 0.75351 0.72683 1.21158 1.20044 1.19547 1.60602 1.50761 1.13357 1.05370 1.22049 0.93618 0.99446 0.91944 1.22526 1.00371 0.80988 0.96256 1.87961 1.87680 1.17446 1.39384 1.23002 0.96764 0.91257 0.87045 1.22910 0.97852 0.98475 0.99229 1.22438 1.01860 0.93466 0.97606 1.22340 0.98124 0.98193 0.97298 1.22278 1.00137 0.93089 1.01045 0.93988 0.94230 0.92655 0.94285 0.94968 0.93045 0.84810 0.97440 0.89864 0.91324 0.92119 0.90997 0.92287 0.90382 0.89905 0.90543 0.89852 0.92500 0.89747 0.92593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.80 9.53 71.98 0.69 -4.12 16 2 C -0.10 -4.89 5.47 30.60 0.17 -4.73 16 3 C 0.20 10.64 1.92 44.17 0.08 10.73 16 4 H -0.05 -2.81 7.31 -2.39 -0.02 -2.82 16 5 C -0.59 -33.57 6.92 25.60 0.18 -33.39 16 6 H 0.05 2.68 7.75 -2.91 -0.02 2.66 16 7 C -0.03 -1.50 5.28 84.66 0.45 -1.05 16 8 N -0.94 -57.72 13.20 21.45 0.28 -57.44 16 9 Si 1.11 51.06 29.91 68.60 2.05 53.12 16 10 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 11 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 12 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 13 N -0.67 -29.63 5.86 -495.43 -2.90 -32.53 16 14 C 0.06 2.18 5.93 86.30 0.51 2.69 16 15 C 0.08 2.19 6.10 71.98 0.44 2.63 16 16 O -0.40 -12.81 9.35 -148.98 -1.39 -14.20 16 17 C 0.08 1.82 3.38 31.32 0.11 1.92 16 18 C -0.15 -2.92 6.56 31.70 0.21 -2.71 16 19 C -0.12 -1.82 6.91 31.91 0.22 -1.60 16 20 C -0.12 -2.20 6.83 31.67 0.22 -1.98 16 21 C -0.13 -2.84 6.61 31.32 0.21 -2.63 16 22 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 23 H 0.04 1.91 6.89 -2.39 -0.02 1.90 16 24 H 0.05 2.29 7.89 -2.39 -0.02 2.27 16 25 H 0.04 1.69 7.13 -2.39 -0.02 1.67 16 26 H 0.03 1.70 6.18 -2.39 -0.01 1.68 16 27 H 0.26 16.12 5.62 -92.71 -0.52 15.60 16 28 H 0.33 15.50 7.82 -89.69 -0.70 14.80 16 29 H 0.01 0.30 7.95 -2.39 -0.02 0.28 16 30 H 0.08 2.89 7.20 -2.39 -0.02 2.87 16 31 H 0.07 1.64 8.14 -2.38 -0.02 1.63 16 32 H 0.06 1.70 8.10 -2.39 -0.02 1.68 16 33 H 0.07 1.50 7.81 -2.39 -0.02 1.49 16 34 H 0.06 1.38 8.08 -2.38 -0.02 1.36 16 35 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.08 1.06 8.14 -2.38 -0.02 1.05 16 38 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 39 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.06 1.52 7.95 -2.39 -0.02 1.50 16 Total: -1.00 -64.52 319.91 2.03 -62.49 By element: Atomic # 1 Polarization: 22.29 SS G_CDS: 0.52 Total: 22.82 kcal Atomic # 6 Polarization: -37.72 SS G_CDS: 3.47 Total: -34.25 kcal Atomic # 7 Polarization: -87.35 SS G_CDS: -2.62 Total: -89.97 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: -1.39 Total: -14.20 kcal Atomic # 14 Polarization: 51.06 SS G_CDS: 2.05 Total: 53.12 kcal Total: -64.52 2.03 -62.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082627407.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.498 kcal (2) G-P(sol) polarization free energy of solvation -64.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds