Wall clock time and date at job start Sun Mar 29 2020 23:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46847 * 2 1 4 4 H 1.09000 * 109.47639 * 306.81464 * 3 2 1 5 5 C 1.50708 * 109.46946 * 186.81249 * 3 2 1 6 6 H 1.08002 * 119.99879 * 244.96839 * 5 3 2 7 7 C 1.37872 * 119.99954 * 64.96961 * 5 3 2 8 8 N 1.31519 * 119.99831 * 192.20025 * 7 5 3 9 9 Si 1.86802 * 119.99986 * 12.19387 * 7 5 3 10 10 H 1.48494 * 109.47033 * 91.50999 * 9 7 5 11 11 H 1.48497 * 109.46937 * 211.50909 * 9 7 5 12 12 H 1.48497 * 109.47067 * 331.50865 * 9 7 5 13 13 N 1.46909 * 109.47047 * 66.81629 * 3 2 1 14 14 C 1.46896 * 110.99747 * 259.49042 * 13 3 2 15 15 C 1.53002 * 109.47047 * 185.62951 * 14 13 3 16 16 H 1.08992 * 109.46856 * 55.00359 * 15 14 13 17 17 C 1.52996 * 109.46869 * 294.99833 * 15 14 13 18 18 C 1.53002 * 109.46869 * 180.02562 * 17 15 14 19 19 C 1.53003 * 109.47176 * 60.00523 * 18 17 15 20 20 C 1.53003 * 109.46660 * 299.99970 * 19 18 17 21 21 C 1.53002 * 109.47302 * 60.00106 * 20 19 18 22 22 H 1.08997 * 109.46748 * 180.02562 * 21 20 19 23 23 O 1.42889 * 109.47040 * 59.99748 * 21 20 19 24 24 H 1.09003 * 109.47604 * 303.91127 * 1 2 3 25 25 H 1.08998 * 109.47345 * 63.91364 * 1 2 3 26 26 H 1.09004 * 109.47085 * 183.90903 * 1 2 3 27 27 H 1.08995 * 109.47174 * 240.00529 * 2 1 3 28 28 H 1.09000 * 109.47307 * 119.99769 * 2 1 3 29 29 H 0.96996 * 119.99632 * 179.97438 * 8 7 5 30 30 H 1.00898 * 110.99991 * 23.44634 * 13 3 2 31 31 H 1.09000 * 109.47107 * 305.63001 * 14 13 3 32 32 H 1.09008 * 109.47003 * 65.62877 * 14 13 3 33 33 H 1.09006 * 109.47350 * 300.00215 * 17 15 14 34 34 H 1.08998 * 109.47284 * 59.99895 * 17 15 14 35 35 H 1.08993 * 109.47095 * 300.00033 * 18 17 15 36 36 H 1.09006 * 109.46839 * 180.02562 * 18 17 15 37 37 H 1.08991 * 109.47098 * 180.02562 * 19 18 17 38 38 H 1.08997 * 109.47089 * 59.99504 * 19 18 17 39 39 H 1.09006 * 109.47051 * 299.99810 * 20 19 18 40 40 H 1.08998 * 109.47151 * 180.02562 * 20 19 18 41 41 H 0.96705 * 113.99951 * 60.00107 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5805 1.9904 -0.8227 5 6 3.5375 1.4459 -0.1685 6 1 4.1698 1.8091 0.6282 7 6 4.1004 0.9854 -1.3399 8 7 5.3948 0.7614 -1.4037 9 14 3.0246 0.6796 -2.8360 10 1 2.9768 1.9070 -3.6705 11 1 3.5907 -0.4387 -3.6324 12 1 1.6513 0.3273 -2.3945 13 7 1.6890 2.0860 1.2732 14 6 0.5042 2.9410 1.1219 15 6 0.2533 3.7003 2.4264 16 1 1.1525 4.2491 2.7059 17 6 -0.1032 2.7070 3.5341 18 6 -0.3547 3.4663 4.8383 19 6 -1.5118 4.4480 4.6420 20 6 -1.1553 5.4413 3.5341 21 6 -0.9037 4.6819 2.2299 22 1 -0.6494 5.3896 1.4408 23 8 -2.0822 3.9620 1.8630 24 1 -0.3634 0.5733 0.8529 25 1 -0.3634 0.4519 -0.9229 26 1 -0.3633 -1.0253 0.0701 27 1 1.8933 -0.5137 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 5.7908 0.4371 -2.2276 30 1 1.5490 1.3991 1.9989 31 1 0.6707 3.6529 0.3134 32 1 -0.3628 2.3227 0.8889 33 1 -1.0025 2.1581 3.2544 34 1 0.7208 2.0073 3.6737 35 1 0.5442 4.0154 5.1182 36 1 -0.6083 2.7586 5.6277 37 1 -1.6906 4.9892 5.5710 38 1 -2.4107 3.8988 4.3621 39 1 -0.2563 5.9905 3.8140 40 1 -1.9793 6.1409 3.3945 41 1 -2.8576 4.5224 1.7219 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082994889.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:36 Heat of formation + Delta-G solvation = -72.511239 kcal Electronic energy + Delta-G solvation = -18514.850817 eV Core-core repulsion = 15814.599669 eV Total energy + Delta-G solvation = -2700.251149 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.38489 -36.65669 -34.97654 -32.90678 -31.73820 -29.94988 -29.60110 -27.18193 -24.26747 -22.62750 -22.20659 -20.79155 -19.85378 -19.46212 -16.82213 -16.68343 -15.61700 -15.28149 -14.65334 -14.51638 -14.23831 -13.81834 -13.15085 -13.03690 -12.83418 -12.68995 -12.41179 -12.00861 -11.84006 -11.55148 -11.48716 -11.32803 -10.90368 -10.81577 -10.71217 -10.46613 -10.39585 -10.19356 -9.97295 -9.78824 -9.59149 -9.27647 -9.15812 -8.35031 -7.19943 -5.98669 -3.91367 3.32330 3.41552 3.44022 4.32346 4.49391 4.68720 4.75107 4.88662 5.11713 5.25108 5.28943 5.40394 5.52062 5.55420 5.62313 5.65173 5.80790 5.84838 5.92658 5.94742 6.01811 6.11270 6.14364 6.18443 6.28700 6.39511 6.41511 6.51945 6.60001 6.68100 6.75336 6.85582 6.99926 7.27603 7.69787 7.84868 8.05565 8.47240 8.81356 9.17406 9.67654 11.15046 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.035718 B = 0.005872 C = 0.005717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.721824 B = 4767.163426 C = 4896.532744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.151 4.151 3 C 0.192 3.808 4 H 0.022 0.978 5 C -0.495 4.495 6 H 0.079 0.921 7 C 0.069 3.931 8 N -0.900 5.900 9 Si 0.858 3.142 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.251 1.251 13 N -0.674 5.674 14 C 0.063 3.937 15 C -0.075 4.075 16 H 0.087 0.913 17 C -0.111 4.111 18 C -0.118 4.118 19 C -0.113 4.113 20 C -0.151 4.151 21 C 0.109 3.891 22 H 0.052 0.948 23 O -0.559 6.559 24 H 0.051 0.949 25 H 0.043 0.957 26 H 0.039 0.961 27 H 0.061 0.939 28 H 0.055 0.945 29 H 0.261 0.739 30 H 0.326 0.674 31 H 0.060 0.940 32 H 0.034 0.966 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.060 0.940 36 H 0.057 0.943 37 H 0.054 0.946 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.059 0.941 41 H 0.368 0.632 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.589 6.733 9.138 19.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.191 4.191 3 C 0.083 3.917 4 H 0.040 0.960 5 C -0.533 4.533 6 H 0.097 0.903 7 C -0.132 4.132 8 N -0.539 5.539 9 Si 0.686 3.314 10 H -0.209 1.209 11 H -0.216 1.216 12 H -0.176 1.176 13 N -0.304 5.304 14 C -0.067 4.067 15 C -0.094 4.094 16 H 0.105 0.895 17 C -0.148 4.148 18 C -0.156 4.156 19 C -0.151 4.151 20 C -0.188 4.188 21 C 0.050 3.950 22 H 0.070 0.930 23 O -0.363 6.363 24 H 0.070 0.930 25 H 0.062 0.938 26 H 0.058 0.942 27 H 0.080 0.920 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.144 0.856 31 H 0.078 0.922 32 H 0.052 0.948 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.077 0.923 41 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -14.568 6.675 8.981 18.370 hybrid contribution -1.490 -0.309 -1.109 1.883 sum -16.058 6.365 7.872 18.983 Atomic orbital electron populations 1.22001 0.98439 1.00052 1.00907 1.22651 0.92867 1.01698 1.01853 1.19550 0.96614 0.88256 0.87236 0.96019 1.21041 0.89414 1.40814 1.02063 0.90250 1.24916 0.94704 0.95068 0.98532 1.69951 1.10939 1.45933 1.27053 0.87330 0.82406 0.77908 0.83797 1.20858 1.21556 1.17556 1.60634 1.34665 1.26065 1.09006 1.22035 0.92546 0.96465 0.95651 1.21210 0.95700 0.96203 0.96259 0.89483 1.21498 1.01605 0.97922 0.93814 1.21524 0.98197 0.98084 0.97759 1.21423 0.99080 0.97139 0.97426 1.22239 1.01798 0.98114 0.96687 1.21833 0.85998 0.93103 0.94064 0.92981 1.86577 1.20196 1.37901 1.91633 0.92991 0.93758 0.94184 0.92013 0.92613 0.92904 0.85641 0.92153 0.94837 0.91715 0.91550 0.92172 0.92411 0.92737 0.91623 0.91103 0.92260 0.78587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.88 9.33 37.16 0.35 -2.54 16 2 C -0.15 -3.31 4.47 -26.73 -0.12 -3.43 16 3 C 0.19 4.58 1.73 -68.86 -0.12 4.46 16 4 H 0.02 0.54 6.29 -51.93 -0.33 0.22 16 5 C -0.49 -14.16 9.30 -34.44 -0.32 -14.48 16 6 H 0.08 2.51 8.06 -52.49 -0.42 2.09 16 7 C 0.07 2.00 5.36 -17.82 -0.10 1.91 16 8 N -0.90 -27.95 13.96 55.43 0.77 -27.17 16 9 Si 0.86 21.49 25.75 -169.99 -4.38 17.12 16 10 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 11 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 12 H -0.25 -5.90 5.32 56.52 0.30 -5.60 16 13 N -0.67 -13.88 6.01 -107.94 -0.65 -14.53 16 14 C 0.06 1.11 4.37 -3.82 -0.02 1.09 16 15 C -0.07 -1.07 2.23 -90.62 -0.20 -1.28 16 16 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 17 C -0.11 -1.48 4.82 -26.73 -0.13 -1.61 16 18 C -0.12 -1.32 5.92 -26.73 -0.16 -1.47 16 19 C -0.11 -1.12 5.78 -26.73 -0.15 -1.28 16 20 C -0.15 -1.47 5.64 -26.73 -0.15 -1.62 16 21 C 0.11 1.29 3.21 -26.73 -0.09 1.21 16 22 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 23 O -0.56 -6.59 11.39 -35.23 -0.40 -6.99 16 24 H 0.05 0.90 5.64 -51.93 -0.29 0.61 16 25 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.06 1.44 4.71 -51.93 -0.24 1.19 16 28 H 0.06 1.19 7.99 -51.93 -0.41 0.78 16 29 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 30 H 0.33 6.33 6.57 -39.29 -0.26 6.07 16 31 H 0.06 1.13 7.95 -51.93 -0.41 0.72 16 32 H 0.03 0.60 5.41 -51.92 -0.28 0.32 16 33 H 0.06 0.92 7.68 -51.93 -0.40 0.52 16 34 H 0.07 0.94 6.81 -51.93 -0.35 0.59 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.68 7.68 -51.93 -0.40 0.28 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.37 2.80 9.08 45.56 0.41 3.21 16 LS Contribution 304.25 15.07 4.58 4.58 Total: -1.00 -31.07 304.25 -7.71 -38.77 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -6.43 Total: 7.26 kcal Atomic # 6 Polarization: -17.83 SS G_CDS: -1.20 Total: -19.04 kcal Atomic # 7 Polarization: -41.83 SS G_CDS: 0.12 Total: -41.71 kcal Atomic # 8 Polarization: -6.59 SS G_CDS: -0.40 Total: -6.99 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.38 Total: 17.12 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.07 -7.71 -38.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082994889.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.739 kcal (2) G-P(sol) polarization free energy of solvation -31.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds