Wall clock time and date at job start Sun Mar 29 2020 23:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46847 * 2 1 4 4 H 1.09000 * 109.47639 * 306.81464 * 3 2 1 5 5 C 1.50708 * 109.46946 * 186.81249 * 3 2 1 6 6 H 1.08002 * 119.99879 * 244.96839 * 5 3 2 7 7 C 1.37872 * 119.99954 * 64.96961 * 5 3 2 8 8 N 1.31519 * 119.99831 * 192.20025 * 7 5 3 9 9 Si 1.86802 * 119.99986 * 12.19387 * 7 5 3 10 10 H 1.48494 * 109.47033 * 91.50999 * 9 7 5 11 11 H 1.48497 * 109.46937 * 211.50909 * 9 7 5 12 12 H 1.48497 * 109.47067 * 331.50865 * 9 7 5 13 13 N 1.46909 * 109.47047 * 66.81629 * 3 2 1 14 14 C 1.46896 * 110.99747 * 259.49042 * 13 3 2 15 15 C 1.53002 * 109.47047 * 185.62951 * 14 13 3 16 16 H 1.08992 * 109.46856 * 55.00359 * 15 14 13 17 17 C 1.52996 * 109.46869 * 294.99833 * 15 14 13 18 18 C 1.53002 * 109.46869 * 180.02562 * 17 15 14 19 19 C 1.53003 * 109.47176 * 60.00523 * 18 17 15 20 20 C 1.53003 * 109.46660 * 299.99970 * 19 18 17 21 21 C 1.53002 * 109.47302 * 60.00106 * 20 19 18 22 22 H 1.08997 * 109.46748 * 180.02562 * 21 20 19 23 23 O 1.42889 * 109.47040 * 59.99748 * 21 20 19 24 24 H 1.09003 * 109.47604 * 303.91127 * 1 2 3 25 25 H 1.08998 * 109.47345 * 63.91364 * 1 2 3 26 26 H 1.09004 * 109.47085 * 183.90903 * 1 2 3 27 27 H 1.08995 * 109.47174 * 240.00529 * 2 1 3 28 28 H 1.09000 * 109.47307 * 119.99769 * 2 1 3 29 29 H 0.96996 * 119.99632 * 179.97438 * 8 7 5 30 30 H 1.00898 * 110.99991 * 23.44634 * 13 3 2 31 31 H 1.09000 * 109.47107 * 305.63001 * 14 13 3 32 32 H 1.09008 * 109.47003 * 65.62877 * 14 13 3 33 33 H 1.09006 * 109.47350 * 300.00215 * 17 15 14 34 34 H 1.08998 * 109.47284 * 59.99895 * 17 15 14 35 35 H 1.08993 * 109.47095 * 300.00033 * 18 17 15 36 36 H 1.09006 * 109.46839 * 180.02562 * 18 17 15 37 37 H 1.08991 * 109.47098 * 180.02562 * 19 18 17 38 38 H 1.08997 * 109.47089 * 59.99504 * 19 18 17 39 39 H 1.09006 * 109.47051 * 299.99810 * 20 19 18 40 40 H 1.08998 * 109.47151 * 180.02562 * 20 19 18 41 41 H 0.96705 * 113.99951 * 60.00107 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5805 1.9904 -0.8227 5 6 3.5375 1.4459 -0.1685 6 1 4.1698 1.8091 0.6282 7 6 4.1004 0.9854 -1.3399 8 7 5.3948 0.7614 -1.4037 9 14 3.0246 0.6796 -2.8360 10 1 2.9768 1.9070 -3.6705 11 1 3.5907 -0.4387 -3.6324 12 1 1.6513 0.3273 -2.3945 13 7 1.6890 2.0860 1.2732 14 6 0.5042 2.9410 1.1219 15 6 0.2533 3.7003 2.4264 16 1 1.1525 4.2491 2.7059 17 6 -0.1032 2.7070 3.5341 18 6 -0.3547 3.4663 4.8383 19 6 -1.5118 4.4480 4.6420 20 6 -1.1553 5.4413 3.5341 21 6 -0.9037 4.6819 2.2299 22 1 -0.6494 5.3896 1.4408 23 8 -2.0822 3.9620 1.8630 24 1 -0.3634 0.5733 0.8529 25 1 -0.3634 0.4519 -0.9229 26 1 -0.3633 -1.0253 0.0701 27 1 1.8933 -0.5137 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 5.7908 0.4371 -2.2276 30 1 1.5490 1.3991 1.9989 31 1 0.6707 3.6529 0.3134 32 1 -0.3628 2.3227 0.8889 33 1 -1.0025 2.1581 3.2544 34 1 0.7208 2.0073 3.6737 35 1 0.5442 4.0154 5.1182 36 1 -0.6083 2.7586 5.6277 37 1 -1.6906 4.9892 5.5710 38 1 -2.4107 3.8988 4.3621 39 1 -0.2563 5.9905 3.8140 40 1 -1.9793 6.1409 3.3945 41 1 -2.8576 4.5224 1.7219 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082994889.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:36 Heat of formation + Delta-G solvation = -95.559474 kcal Electronic energy + Delta-G solvation = -18515.850264 eV Core-core repulsion = 15814.599669 eV Total energy + Delta-G solvation = -2701.250595 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.40762 -38.29249 -35.91990 -34.65013 -33.52017 -31.16105 -30.70446 -29.00843 -25.69969 -24.16104 -23.34191 -21.91952 -21.64048 -20.53441 -18.80268 -17.70432 -16.94059 -16.77541 -16.19923 -15.85657 -15.39913 -15.13186 -14.81667 -14.38845 -14.32596 -13.76230 -13.65293 -13.49822 -13.43240 -12.88153 -12.74944 -12.64909 -12.41265 -12.36019 -12.17003 -11.83514 -11.73942 -11.45462 -11.36858 -11.30459 -11.18441 -10.79943 -10.57667 -10.44532 -8.88655 -8.25527 -6.23412 1.33043 1.36516 1.45951 2.36698 3.07705 3.45854 3.51413 3.86940 3.92870 4.02377 4.22032 4.29590 4.34164 4.42225 4.48205 4.52488 4.59066 4.61655 4.70680 4.77085 4.82422 4.93096 5.03300 5.06261 5.11560 5.14734 5.19480 5.24661 5.33567 5.35905 5.42350 5.49906 5.51784 5.65994 5.74805 6.10210 6.75718 6.82316 6.84947 7.02834 7.40466 8.92076 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.035718 B = 0.005872 C = 0.005717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.721824 B = 4767.163426 C = 4896.532744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.149 4.149 3 C 0.198 3.802 4 H 0.017 0.983 5 C -0.503 4.503 6 H 0.031 0.969 7 C 0.012 3.988 8 N -0.950 5.950 9 Si 0.926 3.074 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.224 1.224 13 N -0.685 5.685 14 C 0.068 3.932 15 C -0.074 4.074 16 H 0.075 0.925 17 C -0.106 4.106 18 C -0.117 4.117 19 C -0.110 4.110 20 C -0.145 4.145 21 C 0.114 3.886 22 H 0.052 0.948 23 O -0.573 6.573 24 H 0.060 0.940 25 H 0.045 0.955 26 H 0.064 0.936 27 H 0.048 0.952 28 H 0.053 0.947 29 H 0.263 0.737 30 H 0.333 0.667 31 H 0.045 0.955 32 H 0.037 0.963 33 H 0.059 0.941 34 H 0.051 0.949 35 H 0.058 0.942 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.064 0.936 39 H 0.070 0.930 40 H 0.082 0.918 41 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.691 7.090 9.344 22.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.189 4.189 3 C 0.088 3.912 4 H 0.035 0.965 5 C -0.541 4.541 6 H 0.049 0.951 7 C -0.185 4.185 8 N -0.591 5.591 9 Si 0.750 3.250 10 H -0.206 1.206 11 H -0.213 1.213 12 H -0.147 1.147 13 N -0.316 5.316 14 C -0.061 4.061 15 C -0.092 4.092 16 H 0.093 0.907 17 C -0.144 4.144 18 C -0.155 4.155 19 C -0.147 4.147 20 C -0.183 4.183 21 C 0.054 3.946 22 H 0.070 0.930 23 O -0.381 6.381 24 H 0.078 0.922 25 H 0.064 0.936 26 H 0.083 0.917 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.151 0.849 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.083 0.917 39 H 0.089 0.911 40 H 0.101 0.899 41 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -17.710 7.047 9.210 21.169 hybrid contribution -0.460 -0.386 -1.083 1.238 sum -18.170 6.662 8.128 20.990 Atomic orbital electron populations 1.21890 0.95215 1.01895 1.01391 1.22504 0.95660 0.99554 1.01138 1.19333 0.93336 0.89979 0.88526 0.96472 1.21331 0.91886 1.40060 1.00856 0.95069 1.25768 0.95999 0.94919 1.01813 1.70104 1.13207 1.47672 1.28072 0.86241 0.81745 0.77767 0.79261 1.20618 1.21300 1.14662 1.60474 1.36882 1.26345 1.07849 1.22028 0.91090 0.95780 0.97176 1.21156 0.96721 0.96599 0.94762 0.90684 1.21427 1.00625 0.97587 0.94723 1.21521 0.98911 0.98448 0.96585 1.21408 0.98177 0.96873 0.98272 1.22200 1.02738 0.98139 0.95217 1.21697 0.85273 0.92192 0.95417 0.93003 1.86516 1.20880 1.38919 1.91735 0.92150 0.93576 0.91736 0.93361 0.92829 0.92784 0.84887 0.93630 0.94460 0.92237 0.93061 0.92324 0.91537 0.91063 0.91744 0.91121 0.89921 0.76306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.96 9.33 71.98 0.67 -4.28 16 2 C -0.15 -6.32 4.47 30.59 0.14 -6.18 16 3 C 0.20 9.41 1.73 44.17 0.08 9.49 16 4 H 0.02 0.84 6.29 -2.39 -0.02 0.83 16 5 C -0.50 -29.71 9.30 25.60 0.24 -29.47 16 6 H 0.03 2.08 8.06 -2.91 -0.02 2.06 16 7 C 0.01 0.69 5.36 84.65 0.45 1.14 16 8 N -0.95 -60.91 13.96 21.45 0.30 -60.61 16 9 Si 0.93 44.58 25.75 68.60 1.77 46.35 16 10 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 11 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 12 H -0.22 -9.71 5.32 99.48 0.53 -9.18 16 13 N -0.68 -28.40 6.01 -495.41 -2.98 -31.38 16 14 C 0.07 2.37 4.37 86.30 0.38 2.74 16 15 C -0.07 -2.04 2.23 -10.79 -0.02 -2.06 16 16 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 17 C -0.11 -2.71 4.82 30.59 0.15 -2.56 16 18 C -0.12 -2.39 5.92 30.60 0.18 -2.21 16 19 C -0.11 -1.85 5.78 30.60 0.18 -1.68 16 20 C -0.15 -2.40 5.64 30.60 0.17 -2.23 16 21 C 0.11 2.45 3.21 30.60 0.10 2.55 16 22 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 23 O -0.57 -11.96 11.39 -148.98 -1.70 -13.66 16 24 H 0.06 1.93 5.64 -2.39 -0.01 1.92 16 25 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 27 H 0.05 2.16 4.71 -2.39 -0.01 2.15 16 28 H 0.05 2.26 7.99 -2.39 -0.02 2.24 16 29 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 30 H 0.33 12.95 6.57 -89.70 -0.59 12.36 16 31 H 0.05 1.69 7.95 -2.39 -0.02 1.67 16 32 H 0.04 1.27 5.41 -2.38 -0.01 1.26 16 33 H 0.06 1.58 7.68 -2.38 -0.02 1.56 16 34 H 0.05 1.43 6.81 -2.39 -0.02 1.42 16 35 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 37 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.06 1.13 7.68 -2.39 -0.02 1.11 16 39 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 40 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.39 4.64 9.08 -74.05 -0.67 3.97 16 Total: -1.00 -68.59 304.25 -0.33 -68.93 By element: Atomic # 1 Polarization: 25.56 SS G_CDS: -0.43 Total: 25.13 kcal Atomic # 6 Polarization: -37.45 SS G_CDS: 2.71 Total: -34.75 kcal Atomic # 7 Polarization: -89.31 SS G_CDS: -2.68 Total: -91.99 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: -1.70 Total: -13.66 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 1.77 Total: 46.35 kcal Total: -68.59 -0.33 -68.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082994889.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.632 kcal (2) G-P(sol) polarization free energy of solvation -68.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds