Wall clock time and date at job start Sun Mar 29 2020 23:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47046 * 2 1 4 4 H 1.09000 * 109.47496 * 304.28679 * 3 2 1 5 5 C 1.50701 * 109.47162 * 184.28512 * 3 2 1 6 6 H 1.07993 * 120.00205 * 240.00210 * 5 3 2 7 7 C 1.37882 * 119.99614 * 59.99964 * 5 3 2 8 8 N 1.31510 * 120.00076 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 119.99647 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47215 * 90.00355 * 9 7 5 11 11 H 1.48504 * 109.46900 * 210.00288 * 9 7 5 12 12 H 1.48498 * 109.47354 * 330.00148 * 9 7 5 13 13 N 1.46902 * 109.46992 * 64.29044 * 3 2 1 14 14 C 1.46904 * 111.00007 * 206.32774 * 13 3 2 15 15 C 1.52994 * 109.47468 * 174.47906 * 14 13 3 16 16 H 1.09006 * 109.47159 * 304.99838 * 15 14 13 17 17 C 1.53002 * 109.47068 * 64.99586 * 15 14 13 18 18 C 1.52998 * 109.47044 * 180.02562 * 17 15 14 19 19 C 1.53005 * 109.46889 * 299.99907 * 18 17 15 20 20 C 1.53002 * 109.47201 * 60.00190 * 19 18 17 21 21 C 1.52994 * 109.47068 * 300.00090 * 20 19 18 22 22 H 1.09006 * 109.47159 * 299.99748 * 21 20 19 23 23 O 1.42895 * 109.47196 * 180.02562 * 21 20 19 24 24 H 1.08998 * 109.46967 * 294.86002 * 1 2 3 25 25 H 1.08997 * 109.47023 * 54.86036 * 1 2 3 26 26 H 1.08998 * 109.47287 * 174.86229 * 1 2 3 27 27 H 1.08996 * 109.47006 * 239.99824 * 2 1 3 28 28 H 1.08996 * 109.46748 * 120.00086 * 2 1 3 29 29 H 0.97001 * 119.99711 * 179.97438 * 8 7 5 30 30 H 1.00899 * 111.00758 * 82.37045 * 13 3 2 31 31 H 1.09002 * 109.46509 * 294.48032 * 14 13 3 32 32 H 1.08997 * 109.47225 * 54.46939 * 14 13 3 33 33 H 1.08996 * 109.47452 * 300.00177 * 17 15 14 34 34 H 1.08997 * 109.47120 * 60.00004 * 17 15 14 35 35 H 1.09005 * 109.47502 * 180.02562 * 18 17 15 36 36 H 1.08997 * 109.47465 * 59.99840 * 18 17 15 37 37 H 1.08999 * 109.47097 * 299.99670 * 19 18 17 38 38 H 1.09010 * 109.46900 * 179.97438 * 19 18 17 39 39 H 1.08998 * 109.46979 * 179.97438 * 20 19 18 40 40 H 1.09006 * 109.46925 * 59.99981 * 20 19 18 41 41 H 0.96699 * 114.00408 * 59.99645 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6153 1.9781 -0.8491 5 6 3.5433 1.4438 -0.1062 6 1 4.1394 1.8916 0.6751 7 6 4.1575 0.8733 -1.2009 8 7 3.4316 0.3285 -2.1525 9 14 6.0209 0.8744 -1.3321 10 1 6.5624 -0.3551 -0.6993 11 1 6.4163 0.9099 -2.7631 12 1 6.5654 2.0691 -0.6384 13 7 1.6368 2.1044 1.2479 14 6 1.5294 3.5577 1.0621 15 6 0.9768 4.1956 2.3382 16 1 0.0321 3.7203 2.6024 17 6 1.9794 4.0062 3.4784 18 6 1.4265 4.6436 4.7547 19 6 1.1970 6.1381 4.5203 20 6 0.1945 6.3275 3.3801 21 6 0.7473 5.6900 2.1038 22 1 1.6919 6.1657 1.8398 23 8 -0.1887 5.8674 1.0388 24 1 -0.3633 0.4320 0.9324 25 1 -0.3633 0.5915 -0.8404 26 1 -0.3634 -1.0235 -0.0920 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.8637 -0.0725 -2.9228 30 1 2.2742 1.8819 1.9977 31 1 2.5152 3.9702 0.8471 32 1 0.8579 3.7690 0.2300 33 1 2.1426 2.9416 3.6457 34 1 2.9240 4.4815 3.2143 35 1 2.1409 4.5091 5.5670 36 1 0.4820 4.1680 5.0187 37 1 2.1416 6.6137 4.2564 38 1 0.8027 6.5921 5.4295 39 1 0.0307 7.3921 3.2134 40 1 -0.7501 5.8518 3.6441 41 1 -0.3820 6.7927 0.8350 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082994893.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:38 Heat of formation + Delta-G solvation = -86.541523 kcal Electronic energy + Delta-G solvation = -18315.996948 eV Core-core repulsion = 15615.137401 eV Total energy + Delta-G solvation = -2700.859548 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.14508 -36.07319 -35.34014 -32.95949 -31.42929 -29.82136 -29.32885 -26.33969 -24.15608 -22.72625 -22.06631 -20.62031 -19.62796 -19.31264 -17.09766 -16.63191 -15.28193 -14.85600 -14.64950 -14.24720 -13.89808 -13.49324 -13.28953 -12.85128 -12.76854 -12.64889 -12.24035 -11.65745 -11.57834 -11.23726 -11.10892 -11.09292 -10.96636 -10.79737 -10.61223 -10.49130 -10.22374 -10.00999 -9.92207 -9.67208 -9.52174 -9.22303 -8.97114 -8.33014 -7.13537 -5.94460 -4.07396 3.28816 3.35830 3.38192 4.32932 4.42605 4.73525 4.78119 5.02369 5.21820 5.27096 5.30691 5.43477 5.53853 5.59505 5.63401 5.79214 5.89383 6.04432 6.09633 6.17069 6.21070 6.36054 6.46673 6.47492 6.53465 6.58444 6.79796 6.80423 6.89252 7.23571 7.26139 7.52888 7.67466 7.82024 7.83722 8.16843 8.23677 8.42168 8.76850 9.06907 9.59765 11.05423 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.024417 B = 0.006179 C = 0.005676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.452604 B = 4530.287206 C = 4932.096643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.105 4.105 3 C 0.215 3.785 4 H 0.031 0.969 5 C -0.543 4.543 6 H 0.052 0.948 7 C 0.066 3.934 8 N -0.885 5.885 9 Si 0.888 3.112 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.689 5.689 14 C 0.077 3.923 15 C -0.074 4.074 16 H 0.079 0.921 17 C -0.114 4.114 18 C -0.120 4.120 19 C -0.116 4.116 20 C -0.149 4.149 21 C 0.110 3.890 22 H 0.050 0.950 23 O -0.561 6.561 24 H 0.046 0.954 25 H 0.036 0.964 26 H 0.023 0.977 27 H 0.089 0.911 28 H 0.029 0.971 29 H 0.261 0.739 30 H 0.324 0.676 31 H 0.021 0.979 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.069 0.931 41 H 0.369 0.631 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.823 10.347 10.552 15.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.144 4.144 3 C 0.107 3.893 4 H 0.049 0.951 5 C -0.582 4.582 6 H 0.070 0.930 7 C -0.136 4.136 8 N -0.523 5.523 9 Si 0.716 3.284 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.202 1.202 13 N -0.318 5.318 14 C -0.054 4.054 15 C -0.093 4.093 16 H 0.097 0.903 17 C -0.151 4.151 18 C -0.158 4.158 19 C -0.154 4.154 20 C -0.187 4.187 21 C 0.051 3.949 22 H 0.068 0.932 23 O -0.365 6.365 24 H 0.065 0.935 25 H 0.055 0.945 26 H 0.042 0.958 27 H 0.107 0.893 28 H 0.048 0.952 29 H 0.071 0.929 30 H 0.140 0.860 31 H 0.039 0.961 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.088 0.912 41 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -5.469 9.474 10.258 14.997 hybrid contribution 2.078 0.901 -0.203 2.274 sum -3.391 10.376 10.055 14.841 Atomic orbital electron populations 1.21681 0.99009 0.98127 1.00443 1.21490 0.92085 0.99315 1.01512 1.19137 0.92548 0.91123 0.86523 0.95102 1.21878 0.92815 1.37791 1.05728 0.92988 1.24937 0.97855 0.95107 0.95686 1.69885 1.34780 1.38163 1.09520 0.86672 0.86257 0.78320 0.77178 1.20663 1.21220 1.20155 1.60898 1.54694 1.06540 1.09708 1.21704 0.98356 0.89675 0.95626 1.21149 0.99784 0.92330 0.96078 0.90272 1.21575 0.98202 1.01552 0.93813 1.21569 1.01180 0.95122 0.97917 1.21481 0.99102 0.97025 0.97771 1.22263 0.99876 1.00257 0.96331 1.21847 0.90840 0.96898 0.85355 0.93164 1.86614 1.64963 1.30461 1.54454 0.93471 0.94464 0.95789 0.89297 0.95211 0.92940 0.85986 0.96084 0.91349 0.90671 0.92236 0.92161 0.91911 0.92075 0.92194 0.92299 0.91248 0.78475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 9.73 37.16 0.36 -2.56 16 2 C -0.11 -2.61 5.45 -26.73 -0.15 -2.76 16 3 C 0.21 5.48 1.99 -68.86 -0.14 5.35 16 4 H 0.03 0.89 7.69 -51.93 -0.40 0.49 16 5 C -0.54 -14.93 8.49 -34.44 -0.29 -15.22 16 6 H 0.05 1.42 7.72 -52.49 -0.41 1.01 16 7 C 0.07 1.85 5.29 -17.82 -0.09 1.76 16 8 N -0.89 -25.50 11.30 55.43 0.63 -24.87 16 9 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 N -0.69 -14.89 5.71 -107.95 -0.62 -15.51 16 14 C 0.08 1.51 4.89 -3.82 -0.02 1.50 16 15 C -0.07 -1.16 2.14 -90.62 -0.19 -1.36 16 16 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 17 C -0.11 -1.57 4.97 -26.73 -0.13 -1.70 16 18 C -0.12 -1.34 5.92 -26.73 -0.16 -1.50 16 19 C -0.12 -1.17 5.92 -26.73 -0.16 -1.33 16 20 C -0.15 -1.60 5.54 -26.73 -0.15 -1.75 16 21 C 0.11 1.47 2.90 -26.73 -0.08 1.40 16 22 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 23 O -0.56 -7.90 12.56 -35.23 -0.44 -8.34 16 24 H 0.05 0.98 7.88 -51.93 -0.41 0.57 16 25 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.09 2.44 5.97 -51.93 -0.31 2.13 16 28 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 30 H 0.32 6.82 6.85 -39.29 -0.27 6.55 16 31 H 0.02 0.45 8.13 -51.93 -0.42 0.02 16 32 H 0.07 1.49 7.31 -51.93 -0.38 1.11 16 33 H 0.07 1.10 6.81 -51.93 -0.35 0.74 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.37 3.43 9.08 45.56 0.41 3.84 16 LS Contribution 317.12 15.07 4.78 4.78 Total: -1.00 -29.32 317.12 -8.61 -37.93 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -6.74 Total: 7.79 kcal Atomic # 6 Polarization: -16.98 SS G_CDS: -1.20 Total: -18.17 kcal Atomic # 7 Polarization: -40.39 SS G_CDS: 0.01 Total: -40.38 kcal Atomic # 8 Polarization: -7.90 SS G_CDS: -0.44 Total: -8.34 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -29.32 -8.61 -37.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082994893.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.608 kcal (2) G-P(sol) polarization free energy of solvation -29.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds