Wall clock time and date at job start Sun Mar 29 2020 23:03:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53009 * 109.46634 * 2 1 4 4 H 1.09000 * 109.46629 * 185.15933 * 3 2 1 5 5 C 1.50698 * 109.47165 * 305.15995 * 3 2 1 6 6 H 1.08004 * 120.00142 * 120.00210 * 5 3 2 7 7 C 1.37880 * 119.99847 * 300.00028 * 5 3 2 8 8 N 1.31507 * 120.00400 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99769 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47048 * 59.99944 * 9 7 5 11 11 H 1.48501 * 109.47068 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47221 * 299.99947 * 9 7 5 13 13 N 1.46895 * 109.46837 * 65.16112 * 3 2 1 14 14 C 1.46905 * 111.00180 * 86.26422 * 13 3 2 15 15 C 1.53000 * 109.47195 * 174.26021 * 14 13 3 16 16 O 1.42900 * 109.47287 * 64.99953 * 15 14 13 17 17 C 1.53004 * 109.47115 * 305.00183 * 15 14 13 18 18 C 1.53000 * 109.47115 * 180.02562 * 17 15 14 19 19 C 1.53000 * 109.47157 * 59.99636 * 18 17 15 20 20 C 1.52996 * 109.47512 * 300.00381 * 19 18 17 21 21 C 1.53000 * 109.47161 * 185.00216 * 15 14 13 22 22 H 1.08997 * 109.47739 * 294.86157 * 1 2 3 23 23 H 1.09000 * 109.47362 * 54.86625 * 1 2 3 24 24 H 1.09005 * 109.46880 * 174.86225 * 1 2 3 25 25 H 1.08993 * 109.47523 * 240.00495 * 2 1 3 26 26 H 1.08999 * 109.47381 * 119.99660 * 2 1 3 27 27 H 0.96996 * 120.00903 * 179.97438 * 8 7 5 28 28 H 1.00901 * 111.00339 * 322.30928 * 13 3 2 29 29 H 1.08994 * 109.46871 * 294.26310 * 14 13 3 30 30 H 1.09006 * 109.46993 * 54.26124 * 14 13 3 31 31 H 0.96706 * 113.99776 * 300.00004 * 16 15 14 32 32 H 1.08999 * 109.46833 * 299.99552 * 17 15 14 33 33 H 1.08996 * 109.47306 * 59.99591 * 17 15 14 34 34 H 1.08995 * 109.47128 * 299.99971 * 18 17 15 35 35 H 1.08996 * 109.47395 * 179.97438 * 18 17 15 36 36 H 1.08995 * 109.47590 * 179.97438 * 19 18 17 37 37 H 1.09012 * 109.47046 * 59.99929 * 19 18 17 38 38 H 1.09007 * 109.46928 * 300.00171 * 20 19 18 39 39 H 1.08995 * 109.47671 * 179.97438 * 20 19 18 40 40 H 1.09004 * 109.46432 * 299.99754 * 21 15 14 41 41 H 1.08995 * 109.47150 * 59.99952 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1260 1.4440 -0.0924 5 6 1.4359 2.1889 -1.1616 6 1 0.8267 3.0628 -0.9839 7 6 1.6611 1.7560 -2.4511 8 7 2.4025 0.6916 -2.6675 9 14 0.9118 2.6807 -3.8909 10 1 1.4061 4.0810 -3.8911 11 1 1.3019 2.0184 -5.1615 12 1 -0.5679 2.6781 -3.7648 13 7 1.6545 2.0981 1.2568 14 6 2.6475 1.8439 2.3092 15 6 2.2887 2.6554 3.5557 16 8 1.0470 2.1887 4.0869 17 6 2.1603 4.1336 3.1823 18 6 1.8021 4.9452 4.4289 19 6 2.9018 4.7782 5.4795 20 6 3.0303 3.3001 5.8528 21 6 3.3880 2.4885 4.6067 22 1 -0.3634 0.4320 0.9324 23 1 -0.3634 0.5914 -0.8404 24 1 -0.3633 -1.0236 -0.0920 25 1 1.8934 -0.5137 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 2.5606 0.3868 -3.5746 28 1 0.7343 1.8058 1.5498 29 1 2.6519 0.7822 2.5557 30 1 3.6355 2.1389 1.9555 31 1 0.3034 2.2645 3.4733 32 1 3.1075 4.4896 2.7772 33 1 1.3772 4.2525 2.4335 34 1 0.8551 4.5893 4.8345 35 1 1.7110 5.9983 4.1631 36 1 2.6470 5.3567 6.3674 37 1 3.8489 5.1341 5.0739 38 1 2.0832 2.9441 6.2584 39 1 3.8140 3.1810 6.6009 40 1 3.4794 1.4354 4.8727 41 1 4.3351 2.8446 4.2016 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083466387.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:03:44 Heat of formation + Delta-G solvation = -80.546614 kcal Electronic energy + Delta-G solvation = -18603.647398 eV Core-core repulsion = 15903.047809 eV Total energy + Delta-G solvation = -2700.599589 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.36616 -36.31572 -34.78517 -32.52594 -30.97991 -30.61933 -29.16895 -26.44366 -24.18823 -23.26052 -22.34209 -20.80676 -19.54686 -19.27552 -16.58152 -15.92694 -15.35639 -14.86479 -14.63968 -14.41310 -13.89936 -13.51098 -13.29261 -12.77682 -12.59905 -12.31247 -12.19607 -12.01356 -11.80531 -11.53597 -11.26445 -10.94986 -10.85678 -10.72450 -10.56627 -10.53425 -10.33222 -10.04251 -9.96656 -9.59293 -9.55120 -9.35303 -8.92312 -8.34694 -7.23588 -5.97871 -3.99747 3.33452 3.38150 3.41013 4.42850 4.51105 4.84581 4.95730 5.06991 5.24707 5.33640 5.36203 5.53447 5.62929 5.72926 5.79215 5.82777 5.94015 6.03654 6.16170 6.22955 6.30907 6.35188 6.35457 6.38461 6.39656 6.49488 6.57012 6.67652 6.75977 6.90098 7.26672 7.27563 7.50907 7.68755 7.87142 7.98997 8.27137 8.49549 8.59851 9.05247 9.63848 11.09067 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.034243 B = 0.005918 C = 0.005518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.499883 B = 4729.962936 C = 5073.505246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.145 4.145 3 C 0.217 3.783 4 H 0.031 0.969 5 C -0.489 4.489 6 H 0.061 0.939 7 C 0.057 3.943 8 N -0.896 5.896 9 Si 0.894 3.106 10 H -0.278 1.278 11 H -0.290 1.290 12 H -0.278 1.278 13 N -0.680 5.680 14 C 0.033 3.967 15 C 0.140 3.860 16 O -0.563 6.563 17 C -0.132 4.132 18 C -0.117 4.117 19 C -0.118 4.118 20 C -0.113 4.113 21 C -0.104 4.104 22 H 0.027 0.973 23 H 0.069 0.931 24 H 0.023 0.977 25 H 0.092 0.908 26 H 0.010 0.990 27 H 0.259 0.741 28 H 0.322 0.678 29 H 0.024 0.976 30 H 0.070 0.930 31 H 0.374 0.626 32 H 0.065 0.935 33 H 0.083 0.917 34 H 0.063 0.937 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.057 0.943 38 H 0.068 0.932 39 H 0.054 0.946 40 H 0.063 0.937 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.035 4.082 12.829 13.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.185 4.185 3 C 0.109 3.891 4 H 0.049 0.951 5 C -0.528 4.528 6 H 0.079 0.921 7 C -0.143 4.143 8 N -0.536 5.536 9 Si 0.722 3.278 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.204 1.204 13 N -0.312 5.312 14 C -0.097 4.097 15 C 0.099 3.901 16 O -0.370 6.370 17 C -0.169 4.169 18 C -0.155 4.155 19 C -0.156 4.156 20 C -0.150 4.150 21 C -0.142 4.142 22 H 0.046 0.954 23 H 0.088 0.912 24 H 0.042 0.958 25 H 0.110 0.890 26 H 0.029 0.971 27 H 0.069 0.931 28 H 0.140 0.860 29 H 0.042 0.958 30 H 0.089 0.911 31 H 0.221 0.779 32 H 0.083 0.917 33 H 0.101 0.899 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.087 0.913 39 H 0.072 0.928 40 H 0.082 0.918 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.696 4.467 13.009 13.772 hybrid contribution -0.794 -0.502 -1.235 1.552 sum -0.098 3.964 11.774 12.424 Atomic orbital electron populations 1.21590 0.97663 0.98700 1.00695 1.22098 0.95026 1.01138 1.00220 1.19196 0.95868 0.88574 0.85426 0.95104 1.21017 1.30593 1.11482 0.89675 0.92112 1.24913 0.95543 0.95153 0.98737 1.69866 1.38974 1.23948 1.20798 0.86636 0.79542 0.79971 0.81668 1.20382 1.21534 1.20389 1.60863 1.03536 1.62955 1.03813 1.22569 0.97914 0.96888 0.92350 1.21218 0.84271 0.92847 0.91771 1.86424 1.18551 1.86888 1.45089 1.22016 1.03306 0.94373 0.97255 1.21500 0.98791 0.99258 0.95917 1.21536 0.99128 0.96369 0.98553 1.21415 1.01613 0.95014 0.97001 1.21477 0.97018 1.00448 0.95295 0.95436 0.91230 0.95802 0.88967 0.97137 0.93064 0.86049 0.95776 0.91125 0.77879 0.91673 0.89862 0.91801 0.92693 0.92703 0.92439 0.91331 0.92756 0.91803 0.91010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.72 9.40 37.16 0.35 -2.37 16 2 C -0.15 -3.38 5.51 -26.73 -0.15 -3.52 16 3 C 0.22 5.23 2.33 -68.86 -0.16 5.07 16 4 H 0.03 0.84 7.69 -51.93 -0.40 0.44 16 5 C -0.49 -12.93 7.25 -34.44 -0.25 -13.18 16 6 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 7 C 0.06 1.54 5.28 -17.82 -0.09 1.45 16 8 N -0.90 -25.10 11.38 55.43 0.63 -24.47 16 9 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 13 N -0.68 -13.53 5.21 -107.95 -0.56 -14.10 16 14 C 0.03 0.59 4.71 -3.82 -0.02 0.57 16 15 C 0.14 2.07 0.79 -90.62 -0.07 1.99 16 16 O -0.56 -8.39 11.63 -35.23 -0.41 -8.80 16 17 C -0.13 -1.90 4.70 -26.73 -0.13 -2.03 16 18 C -0.12 -1.46 5.78 -26.73 -0.15 -1.61 16 19 C -0.12 -1.34 5.92 -26.73 -0.16 -1.50 16 20 C -0.11 -1.34 5.78 -26.76 -0.15 -1.49 16 21 C -0.10 -1.38 4.94 -26.76 -0.13 -1.52 16 22 H 0.03 0.51 6.63 -51.93 -0.34 0.16 16 23 H 0.07 1.61 6.85 -51.93 -0.36 1.25 16 24 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.09 2.42 6.22 -51.93 -0.32 2.10 16 26 H 0.01 0.22 7.54 -51.93 -0.39 -0.17 16 27 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 28 H 0.32 6.05 5.42 -39.29 -0.21 5.84 16 29 H 0.02 0.45 7.57 -51.93 -0.39 0.05 16 30 H 0.07 1.30 7.91 -51.93 -0.41 0.89 16 31 H 0.37 5.01 7.75 45.56 0.35 5.37 16 32 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.08 1.33 7.47 -51.93 -0.39 0.94 16 34 H 0.06 0.82 7.68 -51.93 -0.40 0.42 16 35 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.63 8.14 -51.92 -0.42 0.21 16 38 H 0.07 0.88 7.68 -51.92 -0.40 0.48 16 39 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 41 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 309.16 15.07 4.66 4.66 Total: -1.00 -27.18 309.16 -8.41 -35.59 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: -6.59 Total: 9.15 kcal Atomic # 6 Polarization: -17.02 SS G_CDS: -1.12 Total: -18.14 kcal Atomic # 7 Polarization: -38.64 SS G_CDS: 0.07 Total: -38.57 kcal Atomic # 8 Polarization: -8.39 SS G_CDS: -0.41 Total: -8.80 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -27.18 -8.41 -35.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083466387.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.956 kcal (2) G-P(sol) polarization free energy of solvation -27.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds