Wall clock time and date at job start Sun Mar 29 2020 23:03:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47221 * 2 1 4 4 H 1.09002 * 109.47156 * 305.14594 * 3 2 1 5 5 C 1.50703 * 109.47296 * 185.14801 * 3 2 1 6 6 H 1.07999 * 119.99657 * 239.99792 * 5 3 2 7 7 C 1.37871 * 119.99936 * 60.00017 * 5 3 2 8 8 N 1.31516 * 120.00282 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99979 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47295 * 59.99678 * 9 7 5 11 11 H 1.48497 * 109.47093 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.46995 * 299.99891 * 9 7 5 13 13 N 1.46895 * 109.47128 * 65.14442 * 3 2 1 14 14 C 1.46906 * 111.00029 * 205.84373 * 13 3 2 15 15 C 1.53001 * 109.47034 * 174.65172 * 14 13 3 16 16 O 1.42894 * 109.47220 * 65.00143 * 15 14 13 17 17 C 1.53006 * 109.47090 * 305.00016 * 15 14 13 18 18 C 1.53001 * 109.47090 * 180.02562 * 17 15 14 19 19 C 1.53003 * 109.47045 * 60.00365 * 18 17 15 20 20 C 1.53006 * 109.46878 * 299.99764 * 19 18 17 21 21 C 1.53001 * 109.47090 * 60.00263 * 20 19 18 22 22 H 1.08999 * 109.47336 * 304.57655 * 1 2 3 23 23 H 1.09004 * 109.47695 * 64.57908 * 1 2 3 24 24 H 1.09001 * 109.47338 * 184.58011 * 1 2 3 25 25 H 1.09007 * 109.46893 * 240.00363 * 2 1 3 26 26 H 1.08999 * 109.47462 * 119.99817 * 2 1 3 27 27 H 0.97002 * 120.00212 * 180.02562 * 8 7 5 28 28 H 1.00896 * 111.00066 * 81.89401 * 13 3 2 29 29 H 1.08995 * 109.47287 * 294.64913 * 14 13 3 30 30 H 1.09003 * 109.46899 * 54.65165 * 14 13 3 31 31 H 0.96704 * 113.99945 * 299.99524 * 16 15 14 32 32 H 1.09000 * 109.46805 * 300.00488 * 17 15 14 33 33 H 1.08999 * 109.46838 * 60.00097 * 17 15 14 34 34 H 1.08996 * 109.47224 * 299.99883 * 18 17 15 35 35 H 1.09001 * 109.47013 * 179.97438 * 18 17 15 36 36 H 1.08998 * 109.47181 * 179.97438 * 19 18 17 37 37 H 1.09000 * 109.47219 * 59.99285 * 19 18 17 38 38 H 1.08996 * 109.46992 * 300.00237 * 20 19 18 39 39 H 1.08999 * 109.46838 * 180.02562 * 20 19 18 40 40 H 1.09001 * 109.47013 * 180.02562 * 21 20 19 41 41 H 1.08997 * 109.47119 * 59.99580 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6033 1.9822 -0.8403 5 6 3.5416 1.4444 -0.1275 6 1 4.1487 1.8883 0.6476 7 6 4.1402 0.8795 -1.2335 8 7 3.4009 0.3385 -2.1771 9 14 6.0016 0.8812 -1.3912 10 1 6.5961 0.1455 -0.2464 11 1 6.3914 0.2180 -2.6614 12 1 6.4971 2.2811 -1.3909 13 7 1.6544 2.0982 1.2566 14 6 1.5557 3.5535 1.0824 15 6 1.0249 4.1865 2.3703 16 8 1.9739 3.9951 3.4213 17 6 -0.3012 3.5267 2.7540 18 6 -0.8322 4.1601 4.0415 19 6 -1.0532 5.6577 3.8196 20 6 0.2728 6.3176 3.4358 21 6 0.8039 5.6841 2.1483 22 1 -0.3634 0.5832 0.8461 23 1 -0.3634 0.4411 -0.9282 24 1 -0.3634 -1.0244 0.0821 25 1 1.8933 -0.5138 -0.8901 26 1 1.8933 -0.5138 0.8900 27 1 3.8221 -0.0593 -2.9551 28 1 2.2979 1.8656 1.9981 29 1 2.5415 3.9602 0.8573 30 1 0.8746 3.7757 0.2608 31 1 2.1628 3.0670 3.6164 32 1 -1.0250 3.6726 1.9522 33 1 -0.1438 2.4597 2.9116 34 1 -0.1086 4.0145 4.8434 35 1 -1.7772 3.6904 4.3146 36 1 -1.4320 6.1089 4.7366 37 1 -1.7769 5.8033 3.0175 38 1 0.9965 6.1719 4.2378 39 1 0.1155 7.3845 3.2782 40 1 1.7488 6.1539 1.8752 41 1 0.0802 5.8297 1.3464 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083466388.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:03:45 Heat of formation + Delta-G solvation = -101.938978 kcal Electronic energy + Delta-G solvation = -18584.612834 eV Core-core repulsion = 15883.085602 eV Total energy + Delta-G solvation = -2701.527231 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.52438 -37.74285 -35.94414 -34.29686 -32.97639 -31.66534 -30.78151 -28.30359 -25.79274 -24.33617 -23.38952 -21.83750 -21.40927 -20.59704 -18.78138 -17.29823 -16.89146 -16.58745 -16.03815 -15.56186 -15.22127 -15.02334 -14.57462 -14.40606 -14.03513 -13.69359 -13.24420 -13.19352 -13.12869 -12.98320 -12.93137 -12.78992 -12.54302 -12.36313 -12.07935 -11.86256 -11.60768 -11.52860 -11.49889 -11.30897 -11.06762 -10.70854 -10.49927 -10.40702 -9.07510 -8.07227 -6.29444 1.37534 1.38146 1.45634 2.38453 3.12337 3.38225 3.55351 3.93415 3.98920 4.04825 4.26428 4.44005 4.54304 4.58189 4.66361 4.69676 4.75967 4.79177 4.84959 4.94203 4.96688 5.02661 5.17142 5.19250 5.25368 5.36184 5.36730 5.42665 5.43617 5.51058 5.59262 5.62736 5.66434 5.77512 6.10181 6.18071 6.33768 6.76290 6.89004 6.98614 7.42011 8.88986 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.030230 B = 0.006308 C = 0.005573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.015814 B = 4437.692692 C = 5023.272921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.101 4.101 3 C 0.223 3.777 4 H -0.004 1.004 5 C -0.561 4.561 6 H 0.048 0.952 7 C 0.021 3.979 8 N -0.910 5.910 9 Si 0.948 3.052 10 H -0.271 1.271 11 H -0.283 1.283 12 H -0.278 1.278 13 N -0.667 5.667 14 C 0.046 3.954 15 C 0.147 3.853 16 O -0.568 6.568 17 C -0.125 4.125 18 C -0.113 4.113 19 C -0.116 4.116 20 C -0.108 4.108 21 C -0.108 4.108 22 H 0.062 0.938 23 H 0.027 0.973 24 H 0.045 0.955 25 H 0.059 0.941 26 H 0.030 0.970 27 H 0.262 0.738 28 H 0.327 0.673 29 H 0.006 0.994 30 H 0.058 0.942 31 H 0.380 0.620 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.059 0.941 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.063 0.937 38 H 0.057 0.943 39 H 0.071 0.929 40 H 0.054 0.946 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.973 7.598 10.331 15.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.140 4.140 3 C 0.114 3.886 4 H 0.014 0.986 5 C -0.600 4.600 6 H 0.066 0.934 7 C -0.179 4.179 8 N -0.549 5.549 9 Si 0.774 3.226 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.204 1.204 13 N -0.296 5.296 14 C -0.085 4.085 15 C 0.106 3.894 16 O -0.376 6.376 17 C -0.163 4.163 18 C -0.150 4.150 19 C -0.154 4.154 20 C -0.146 4.146 21 C -0.146 4.146 22 H 0.081 0.919 23 H 0.047 0.953 24 H 0.064 0.936 25 H 0.077 0.923 26 H 0.049 0.951 27 H 0.071 0.929 28 H 0.144 0.856 29 H 0.024 0.976 30 H 0.076 0.924 31 H 0.228 0.772 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.089 0.911 40 H 0.073 0.927 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.659 8.050 10.050 15.517 hybrid contribution 2.278 -0.577 -0.829 2.492 sum -6.381 7.473 9.220 13.475 Atomic orbital electron populations 1.21575 0.96342 0.99977 1.00433 1.21341 0.94436 0.98164 1.00052 1.18895 0.91437 0.91645 0.86588 0.98583 1.22138 0.94193 1.38096 1.05557 0.93412 1.25638 1.01971 0.94781 0.95527 1.69995 1.36411 1.38734 1.09755 0.85768 0.81222 0.78066 0.77498 1.19613 1.20800 1.20370 1.60861 1.53749 1.06627 1.08405 1.22461 0.98137 0.89712 0.98179 1.21173 0.88310 0.95115 0.84808 1.86428 1.63737 1.31760 1.55629 1.21946 0.95863 1.00444 0.98073 1.21470 1.00682 0.95734 0.97154 1.21541 0.96855 0.95306 1.01682 1.21396 0.97290 0.99287 0.96623 1.21538 1.01119 0.92743 0.99204 0.91946 0.95349 0.93627 0.92294 0.95124 0.92868 0.85623 0.97559 0.92352 0.77158 0.91988 0.91130 0.92232 0.91408 0.91002 0.91789 0.92444 0.91065 0.92749 0.90237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.95 9.85 71.98 0.71 -4.24 16 2 C -0.10 -4.77 5.45 30.59 0.17 -4.61 16 3 C 0.22 10.95 1.97 44.17 0.09 11.04 16 4 H 0.00 -0.21 7.70 -2.39 -0.02 -0.23 16 5 C -0.56 -30.32 8.47 25.60 0.22 -30.10 16 6 H 0.05 2.57 7.73 -2.91 -0.02 2.55 16 7 C 0.02 1.15 5.29 84.65 0.45 1.60 16 8 N -0.91 -52.02 11.29 21.45 0.24 -51.78 16 9 Si 0.95 43.61 29.54 68.60 2.03 45.64 16 10 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 11 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 12 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 13 N -0.67 -26.28 4.60 -495.44 -2.28 -28.56 16 14 C 0.05 1.69 4.71 86.30 0.41 2.09 16 15 C 0.15 4.29 0.79 -10.79 -0.01 4.28 16 16 O -0.57 -16.99 11.63 -148.98 -1.73 -18.72 16 17 C -0.13 -3.28 4.70 30.60 0.14 -3.14 16 18 C -0.11 -2.45 5.78 30.60 0.18 -2.27 16 19 C -0.12 -2.27 5.92 30.60 0.18 -2.09 16 20 C -0.11 -2.38 5.78 30.60 0.18 -2.21 16 21 C -0.11 -2.84 4.94 30.60 0.15 -2.69 16 22 H 0.06 2.29 7.64 -2.39 -0.02 2.27 16 23 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 24 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 25 H 0.06 3.17 5.95 -2.38 -0.01 3.15 16 26 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 28 H 0.33 12.54 7.17 -89.70 -0.64 11.90 16 29 H 0.01 0.26 8.12 -2.39 -0.02 0.24 16 30 H 0.06 2.24 7.92 -2.39 -0.02 2.22 16 31 H 0.38 10.10 7.75 -74.05 -0.57 9.53 16 32 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.07 1.99 7.47 -2.39 -0.02 1.97 16 34 H 0.06 1.36 7.68 -2.39 -0.02 1.34 16 35 H 0.07 1.30 8.14 -2.39 -0.02 1.29 16 36 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.06 1.18 8.14 -2.39 -0.02 1.17 16 38 H 0.06 1.40 7.68 -2.39 -0.02 1.38 16 39 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -58.14 314.57 0.88 -57.25 By element: Atomic # 1 Polarization: 28.73 SS G_CDS: -0.23 Total: 28.51 kcal Atomic # 6 Polarization: -35.18 SS G_CDS: 2.86 Total: -32.33 kcal Atomic # 7 Polarization: -78.30 SS G_CDS: -2.04 Total: -80.34 kcal Atomic # 8 Polarization: -16.99 SS G_CDS: -1.73 Total: -18.72 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -58.14 0.88 -57.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083466388.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.687 kcal (2) G-P(sol) polarization free energy of solvation -58.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds