Wall clock time and date at job start Sun Mar 29 2020 22:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42894 * 114.00247 * 2 1 4 4 C 1.53002 * 109.47606 * 180.02562 * 3 2 1 5 5 H 1.08994 * 109.47527 * 175.04321 * 4 3 2 6 6 N 1.46911 * 109.46807 * 295.04852 * 4 3 2 7 7 C 1.46899 * 110.99459 * 216.24914 * 6 4 3 8 8 C 1.53007 * 109.47148 * 87.98522 * 7 6 4 9 9 C 1.50700 * 115.54512 * 324.20030 * 8 7 6 10 10 H 1.08004 * 119.99970 * 279.22054 * 9 8 7 11 11 C 1.37876 * 119.99891 * 99.23170 * 9 8 7 12 12 N 1.31521 * 119.99975 * 176.00976 * 11 9 8 13 13 Si 1.86797 * 120.00183 * 356.00548 * 11 9 8 14 14 H 1.48491 * 109.47306 * 90.80388 * 13 11 9 15 15 H 1.48500 * 109.47126 * 210.80917 * 13 11 9 16 16 H 1.48501 * 109.46922 * 330.80441 * 13 11 9 17 17 C 1.52994 * 117.49835 * 178.53128 * 8 7 6 18 18 C 1.53001 * 60.03005 * 252.49950 * 17 8 7 19 19 C 1.53000 * 109.46765 * 55.04213 * 4 3 2 20 20 C 1.53000 * 109.46956 * 63.30780 * 19 4 3 21 21 C 1.52998 * 109.47078 * 183.30577 * 19 4 3 22 22 H 1.09008 * 109.46860 * 300.00002 * 1 2 3 23 23 H 1.08996 * 109.47228 * 59.99580 * 1 2 3 24 24 H 1.09001 * 109.47231 * 179.97438 * 1 2 3 25 25 H 1.09007 * 109.47436 * 60.00213 * 3 2 1 26 26 H 1.08998 * 109.47523 * 300.00214 * 3 2 1 27 27 H 1.00895 * 110.99738 * 340.20074 * 6 4 3 28 28 H 1.08998 * 109.47668 * 327.98380 * 7 6 4 29 29 H 1.08997 * 109.47040 * 207.98142 * 7 6 4 30 30 H 0.96991 * 119.99936 * 179.97438 * 12 11 9 31 31 H 1.09002 * 117.49999 * 359.97438 * 17 8 7 32 32 H 1.08998 * 117.49709 * 144.99849 * 17 8 7 33 33 H 1.09004 * 117.50284 * 107.50695 * 18 17 8 34 34 H 1.08998 * 117.49656 * 252.51892 * 18 17 8 35 35 H 1.09003 * 109.47187 * 303.30444 * 19 4 3 36 36 H 1.09002 * 109.47101 * 182.49001 * 20 19 4 37 37 H 1.09000 * 109.46923 * 302.48587 * 20 19 4 38 38 H 1.08998 * 109.47406 * 62.49412 * 20 19 4 39 39 H 1.09007 * 109.47000 * 65.33113 * 21 19 4 40 40 H 1.08999 * 109.47415 * 185.33537 * 21 19 4 41 41 H 1.09002 * 109.47528 * 305.33601 * 21 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.9785 2.1765 -0.0894 6 7 3.9778 0.5611 1.2539 7 6 5.2461 1.1435 1.7124 8 6 4.9596 2.3698 2.5814 9 6 3.7762 3.2024 2.1605 10 1 3.8772 3.9172 1.3571 11 6 2.5646 3.0520 2.8011 12 7 1.5536 3.8326 2.4877 13 14 2.3590 1.7394 4.1142 14 1 2.6896 2.3129 5.4434 15 1 0.9539 1.2588 4.1179 16 1 3.2701 0.6029 3.8249 17 6 6.1586 3.1017 3.1876 18 6 5.2475 2.2569 4.0805 19 6 3.9781 0.3206 -1.1832 20 6 3.5898 1.0107 -2.4924 21 6 5.4956 0.1316 -1.1370 22 1 -0.3633 0.5139 0.8901 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 1.6887 1.8464 0.8900 26 1 1.6886 1.8464 -0.8899 27 1 3.2668 0.6371 1.9657 28 1 5.8424 1.4407 0.8498 29 1 5.7950 0.4047 2.2963 30 1 0.7012 3.7265 2.9381 31 1 7.1515 2.7093 2.9678 32 1 6.0914 4.1855 3.2821 33 1 5.6410 1.3091 4.4479 34 1 4.5808 2.7850 4.7622 35 1 3.4889 -0.6518 -1.1260 36 1 3.8653 0.3749 -3.3339 37 1 2.5139 1.1852 -2.5060 38 1 4.1135 1.9634 -2.5703 39 1 5.7633 -0.4432 -0.2503 40 1 5.8226 -0.4028 -2.0289 41 1 5.9823 1.1062 -1.0986 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083854487.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:41:33 Heat of formation + Delta-G solvation = -44.229775 kcal Electronic energy + Delta-G solvation = -19369.823468 eV Core-core repulsion = 16670.798695 eV Total energy + Delta-G solvation = -2699.024773 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.14931 -38.64305 -36.99991 -34.30517 -33.76721 -30.30568 -27.89378 -27.54142 -27.11382 -25.46411 -23.71391 -23.15607 -20.78071 -20.49357 -18.43395 -17.30143 -17.01406 -16.70656 -16.60939 -15.90331 -15.57561 -15.11334 -14.80993 -14.45638 -14.43194 -14.09970 -13.63907 -13.46368 -13.05209 -12.91229 -12.79818 -12.70517 -12.33831 -12.25667 -12.14648 -11.96874 -11.62690 -11.42269 -11.30350 -11.22496 -10.90860 -10.72260 -10.37450 -10.12615 -8.99660 -8.31355 -6.32710 1.25195 1.34633 1.42705 2.28839 2.95119 3.02139 3.19626 3.67894 4.03912 4.15046 4.18918 4.34696 4.39421 4.45289 4.50544 4.51111 4.58101 4.68577 4.76902 4.78215 4.82504 4.87879 4.93953 4.98146 4.99952 5.08052 5.13727 5.19644 5.25025 5.39292 5.44385 5.50992 5.64791 5.71637 5.74613 6.25931 6.29579 6.50142 6.67618 6.73274 7.32348 8.82266 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.019500 B = 0.012352 C = 0.009021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.558959 B = 2266.254407 C = 3103.099581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.393 6.393 3 C 0.053 3.947 4 C 0.114 3.886 5 H 0.051 0.949 6 N -0.668 5.668 7 C 0.092 3.908 8 C -0.057 4.057 9 C -0.472 4.472 10 H 0.038 0.962 11 C 0.045 3.955 12 N -0.932 5.932 13 Si 0.912 3.088 14 H -0.283 1.283 15 H -0.304 1.304 16 H -0.232 1.232 17 C -0.164 4.164 18 C -0.209 4.209 19 C -0.078 4.078 20 C -0.142 4.142 21 C -0.134 4.134 22 H 0.021 0.979 23 H 0.049 0.951 24 H 0.107 0.893 25 H 0.045 0.955 26 H 0.046 0.954 27 H 0.330 0.670 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.262 0.738 31 H 0.106 0.894 32 H 0.072 0.928 33 H 0.098 0.902 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.045 0.955 38 H 0.049 0.951 39 H 0.057 0.943 40 H 0.062 0.938 41 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.725 -7.928 -5.506 10.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.312 6.312 3 C -0.024 4.024 4 C 0.004 3.996 5 H 0.069 0.931 6 N -0.299 5.299 7 C -0.038 4.038 8 C -0.059 4.059 9 C -0.510 4.510 10 H 0.056 0.944 11 C -0.153 4.153 12 N -0.571 5.571 13 Si 0.740 3.260 14 H -0.210 1.210 15 H -0.232 1.232 16 H -0.156 1.156 17 C -0.202 4.202 18 C -0.246 4.246 19 C -0.098 4.098 20 C -0.200 4.200 21 C -0.191 4.191 22 H 0.040 0.960 23 H 0.067 0.933 24 H 0.125 0.875 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.150 0.850 28 H 0.093 0.907 29 H 0.085 0.915 30 H 0.072 0.928 31 H 0.124 0.876 32 H 0.091 0.909 33 H 0.117 0.883 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 3.945 -8.598 -5.789 11.091 hybrid contribution -1.301 1.312 1.369 2.300 sum 2.644 -7.287 -4.419 8.923 Atomic orbital electron populations 1.22864 0.81018 1.03552 0.99666 1.87841 1.20012 1.27963 1.95396 1.22903 0.95067 0.84138 1.00282 1.21456 0.90853 0.96132 0.91159 0.93137 1.61050 1.06351 1.56556 1.05947 1.21894 0.91867 0.92325 0.97702 1.20483 0.96108 0.97497 0.91854 1.20248 0.93061 1.19887 1.17791 0.94363 1.25429 0.95552 0.96674 0.97681 1.70003 1.03208 1.39726 1.44175 0.86469 0.76559 0.82377 0.80592 1.20978 1.23210 1.15563 1.22859 0.95114 0.97582 1.04642 1.23032 1.04799 1.01877 0.94868 1.21010 0.96850 0.98989 0.92907 1.21837 1.00717 1.00448 0.96955 1.21770 0.94589 1.00943 1.01775 0.95985 0.93277 0.87492 0.93644 0.93612 0.84956 0.90691 0.91473 0.92848 0.87572 0.90897 0.88337 0.91771 0.91338 0.91048 0.93634 0.93232 0.92435 0.91882 0.93691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 11.01 113.37 1.25 2.05 16 2 O -0.39 -15.14 9.71 -148.98 -1.45 -16.58 16 3 C 0.05 2.22 4.93 71.98 0.35 2.57 16 4 C 0.11 4.53 1.15 44.91 0.05 4.58 16 5 H 0.05 2.25 6.37 -2.39 -0.02 2.24 16 6 N -0.67 -27.53 5.86 -491.54 -2.88 -30.42 16 7 C 0.09 3.55 5.03 86.31 0.43 3.99 16 8 C -0.06 -2.49 1.44 -52.91 -0.08 -2.57 16 9 C -0.47 -24.80 6.64 25.60 0.17 -24.63 16 10 H 0.04 2.28 7.93 -2.91 -0.02 2.25 16 11 C 0.05 2.44 3.45 84.65 0.29 2.74 16 12 N -0.93 -54.23 13.61 21.45 0.29 -53.94 16 13 Si 0.91 43.83 22.52 68.60 1.55 45.38 16 14 H -0.28 -13.52 6.80 99.48 0.68 -12.85 16 15 H -0.30 -14.92 7.11 99.48 0.71 -14.21 16 16 H -0.23 -10.43 5.81 99.48 0.58 -9.85 16 17 C -0.16 -6.26 9.95 30.59 0.30 -5.96 16 18 C -0.21 -8.50 7.13 30.62 0.22 -8.28 16 19 C -0.08 -2.54 2.54 -10.79 -0.03 -2.57 16 20 C -0.14 -4.01 8.98 71.98 0.65 -3.36 16 21 C -0.13 -3.80 7.76 71.98 0.56 -3.24 16 22 H 0.02 0.74 8.14 -2.38 -0.02 0.72 16 23 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 24 H 0.11 2.68 8.14 -2.39 -0.02 2.66 16 25 H 0.05 2.24 5.55 -2.38 -0.01 2.22 16 26 H 0.05 1.82 6.71 -2.39 -0.02 1.81 16 27 H 0.33 15.07 3.58 -89.70 -0.32 14.75 16 28 H 0.07 2.71 5.58 -2.39 -0.01 2.70 16 29 H 0.07 2.37 7.91 -2.39 -0.02 2.35 16 30 H 0.26 14.70 8.31 -92.72 -0.77 13.93 16 31 H 0.11 3.33 8.14 -2.39 -0.02 3.31 16 32 H 0.07 2.93 8.14 -2.39 -0.02 2.91 16 33 H 0.10 3.52 8.06 -2.39 -0.02 3.50 16 34 H 0.06 2.87 5.86 -2.39 -0.01 2.85 16 35 H 0.07 2.35 7.45 -2.39 -0.02 2.33 16 36 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.04 1.33 6.50 -2.39 -0.02 1.32 16 38 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.06 1.71 6.95 -2.38 -0.02 1.69 16 40 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.04 1.28 7.28 -2.39 -0.02 1.27 16 Total: -1.00 -58.70 300.63 2.20 -56.51 By element: Atomic # 1 Polarization: 33.22 SS G_CDS: 0.51 Total: 33.74 kcal Atomic # 6 Polarization: -38.86 SS G_CDS: 4.18 Total: -34.69 kcal Atomic # 7 Polarization: -81.77 SS G_CDS: -2.59 Total: -84.36 kcal Atomic # 8 Polarization: -15.14 SS G_CDS: -1.45 Total: -16.58 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 1.55 Total: 45.38 kcal Total: -58.70 2.20 -56.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083854487.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.275 kcal (2) G-P(sol) polarization free energy of solvation -58.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds