Wall clock time and date at job start Sun Mar 29 2020 22:41:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42897 * 113.99810 * 2 1 4 4 C 1.53000 * 109.47223 * 179.97438 * 3 2 1 5 5 H 1.08996 * 109.47554 * 185.64769 * 4 3 2 6 6 N 1.46906 * 109.47130 * 65.64574 * 4 3 2 7 7 C 1.46907 * 110.99702 * 136.98465 * 6 4 3 8 8 C 1.53000 * 109.46844 * 185.44335 * 7 6 4 9 9 C 1.50705 * 115.55103 * 320.94857 * 8 7 6 10 10 H 1.07996 * 119.99708 * 99.40796 * 9 8 7 11 11 C 1.37872 * 119.99950 * 279.41102 * 9 8 7 12 12 N 1.31517 * 120.00182 * 5.27208 * 11 9 8 13 13 Si 1.86797 * 119.99928 * 185.26552 * 11 9 8 14 14 H 1.48494 * 109.47346 * 0.02562 * 13 11 9 15 15 H 1.48502 * 109.47129 * 120.00207 * 13 11 9 16 16 H 1.48500 * 109.47361 * 239.99923 * 13 11 9 17 17 C 1.52995 * 117.49762 * 175.28168 * 8 7 6 18 18 C 1.52999 * 60.03074 * 252.49910 * 17 8 7 19 19 C 1.52998 * 109.47122 * 305.65199 * 4 3 2 20 20 C 1.53000 * 109.47588 * 182.67101 * 19 4 3 21 21 C 1.53007 * 109.46942 * 302.66943 * 19 4 3 22 22 H 1.09003 * 109.46886 * 300.00247 * 1 2 3 23 23 H 1.08995 * 109.46869 * 60.00344 * 1 2 3 24 24 H 1.09000 * 109.46810 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47674 * 59.99782 * 3 2 1 26 26 H 1.09002 * 109.47081 * 299.99580 * 3 2 1 27 27 H 1.00892 * 111.00215 * 260.94635 * 6 4 3 28 28 H 1.09001 * 109.46571 * 65.44234 * 7 6 4 29 29 H 1.08999 * 109.46876 * 305.44306 * 7 6 4 30 30 H 0.97001 * 120.00361 * 185.00413 * 12 11 9 31 31 H 1.09004 * 117.49908 * 359.97438 * 17 8 7 32 32 H 1.08991 * 117.50504 * 144.99703 * 17 8 7 33 33 H 1.09003 * 117.50000 * 107.50329 * 18 17 8 34 34 H 1.09004 * 117.49653 * 252.52415 * 18 17 8 35 35 H 1.09001 * 109.47449 * 62.66570 * 19 4 3 36 36 H 1.08992 * 109.46948 * 59.43336 * 20 19 4 37 37 H 1.08994 * 109.47171 * 179.44154 * 20 19 4 38 38 H 1.09010 * 109.46443 * 299.43759 * 20 19 4 39 39 H 1.08998 * 109.47038 * 185.92240 * 21 19 4 40 40 H 1.08997 * 109.46681 * 305.92189 * 21 19 4 41 41 H 1.08995 * 109.47147 * 65.91858 * 21 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 1 3.9784 2.1755 0.1018 6 7 3.9791 0.5765 -1.2609 7 6 5.1587 1.2710 -1.7939 8 6 5.5086 0.6997 -3.1695 9 6 5.3526 -0.7924 -3.3124 10 1 4.4688 -1.2006 -3.7801 11 6 6.3380 -1.6364 -2.8460 12 7 7.3642 -1.1471 -2.1847 13 14 6.2157 -3.4748 -3.1532 14 1 4.9752 -3.7679 -3.9150 15 1 7.3946 -3.9255 -3.9358 16 1 6.1804 -4.1926 -1.8538 17 6 6.6463 1.3684 -3.9436 18 6 5.1973 1.5637 -4.3940 19 6 3.9771 0.3065 1.1731 20 6 5.5051 0.2400 1.2134 21 6 3.4579 0.9048 2.4822 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.6886 1.8465 0.8899 26 1 1.6887 1.8463 -0.8900 27 1 4.1622 -0.4086 -1.1426 28 1 6.0008 1.1290 -1.1166 29 1 4.9425 2.3353 -1.8868 30 1 8.0930 -1.7298 -1.9198 31 1 7.1453 2.2156 -3.4731 32 1 7.2820 0.7292 -4.5562 33 1 4.7432 2.5392 -4.2197 34 1 4.8795 1.0526 -5.3028 35 1 3.5728 -0.6979 1.0472 36 1 5.9096 1.2455 1.3293 37 1 5.8198 -0.3775 2.0546 38 1 5.8744 -0.1954 0.2848 39 1 3.8591 0.3403 3.3239 40 1 3.7758 1.9447 2.5576 41 1 2.3692 0.8556 2.4976 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083854488.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:41:36 Heat of formation + Delta-G solvation = -34.292877 kcal Electronic energy + Delta-G solvation = -18686.618286 eV Core-core repulsion = 15988.024410 eV Total energy + Delta-G solvation = -2698.593876 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.47906 -36.78546 -35.69101 -32.13013 -31.85553 -28.97875 -26.54789 -26.02372 -25.27992 -24.02023 -21.78787 -20.95789 -19.65193 -18.71030 -16.08294 -15.76991 -15.69210 -15.03152 -14.60619 -14.49074 -14.22106 -13.77144 -13.08931 -12.85024 -12.47849 -12.22284 -11.98453 -11.82988 -11.62288 -11.26756 -11.07547 -11.04387 -10.93110 -10.77122 -10.53455 -10.38087 -10.20750 -10.10240 -10.01030 -9.36010 -9.18593 -8.69584 -8.36784 -7.99623 -7.15385 -5.96147 -3.98850 3.33228 3.42400 3.47709 4.20996 4.48103 5.02311 5.17746 5.32706 5.34272 5.44059 5.49961 5.51544 5.58413 5.75874 5.83252 5.85722 5.92532 6.08025 6.10564 6.21869 6.23495 6.28164 6.38971 6.48179 6.53754 6.67330 6.77056 6.85359 6.87646 6.96636 7.11059 7.20740 7.51569 7.54712 7.59283 7.96997 8.25579 8.56901 8.65952 9.04036 9.64946 11.12222 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.018957 B = 0.008091 C = 0.007696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.708636 B = 3459.794467 C = 3637.247930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.374 6.374 3 C 0.077 3.923 4 C 0.092 3.908 5 H 0.072 0.928 6 N -0.663 5.663 7 C 0.103 3.897 8 C 0.055 3.945 9 C -0.475 4.475 10 H 0.061 0.939 11 C 0.068 3.932 12 N -0.881 5.881 13 Si 0.882 3.118 14 H -0.273 1.273 15 H -0.287 1.287 16 H -0.286 1.286 17 C -0.169 4.169 18 C -0.208 4.208 19 C -0.113 4.113 20 C -0.155 4.155 21 C -0.141 4.141 22 H 0.030 0.970 23 H 0.037 0.963 24 H 0.079 0.921 25 H 0.038 0.962 26 H 0.049 0.951 27 H 0.359 0.641 28 H 0.037 0.963 29 H 0.031 0.969 30 H 0.257 0.743 31 H 0.059 0.941 32 H 0.077 0.923 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.045 0.955 37 H 0.044 0.956 38 H 0.081 0.919 39 H 0.047 0.953 40 H 0.047 0.953 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.056 4.611 7.038 11.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.293 6.293 3 C -0.001 4.001 4 C -0.020 4.020 5 H 0.090 0.910 6 N -0.295 5.295 7 C -0.027 4.027 8 C 0.054 3.946 9 C -0.513 4.513 10 H 0.079 0.921 11 C -0.134 4.134 12 N -0.519 5.519 13 Si 0.710 3.290 14 H -0.197 1.197 15 H -0.213 1.213 16 H -0.212 1.212 17 C -0.207 4.207 18 C -0.245 4.245 19 C -0.133 4.133 20 C -0.212 4.212 21 C -0.199 4.199 22 H 0.049 0.951 23 H 0.055 0.945 24 H 0.097 0.903 25 H 0.056 0.944 26 H 0.067 0.933 27 H 0.181 0.819 28 H 0.055 0.945 29 H 0.050 0.950 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.096 0.904 33 H 0.080 0.920 34 H 0.091 0.909 35 H 0.097 0.903 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.100 0.900 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.238 4.721 6.787 11.671 hybrid contribution 0.600 -1.002 0.423 1.242 sum -7.638 3.719 7.210 11.143 Atomic orbital electron populations 1.22646 0.82584 1.02043 0.99120 1.87965 1.18162 1.27995 1.95128 1.22676 0.94279 0.84463 0.98636 1.21647 0.92473 0.97830 0.90019 0.91031 1.60453 1.36632 1.08713 1.23715 1.21533 0.90387 0.93913 0.96822 1.18815 0.95873 0.92941 0.86945 1.20452 1.04651 0.88533 1.37685 0.92124 1.24943 0.95872 0.98002 0.94571 1.70020 1.08933 1.35230 1.37694 0.86687 0.77957 0.86402 0.77917 1.19712 1.21313 1.21180 1.22562 0.90525 1.01764 1.05851 1.22970 0.99689 1.00267 1.01612 1.21667 0.96063 1.00747 0.94837 1.21982 0.94966 1.01072 1.03173 1.21827 1.00573 1.00174 0.97290 0.95102 0.94472 0.90268 0.94390 0.93278 0.81911 0.94501 0.95016 0.93363 0.92281 0.90437 0.91970 0.90852 0.90309 0.93615 0.93639 0.90011 0.93339 0.93381 0.92936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.52 16 2 O -0.37 -6.13 9.81 -35.23 -0.35 -6.47 16 3 C 0.08 1.18 5.18 37.16 0.19 1.37 16 4 C 0.09 1.56 2.20 -67.71 -0.15 1.41 16 5 H 0.07 1.19 7.52 -51.93 -0.39 0.80 16 6 N -0.66 -13.76 5.77 -106.72 -0.62 -14.38 16 7 C 0.10 2.28 5.22 -3.82 -0.02 2.26 16 8 C 0.05 1.34 1.70 -155.63 -0.26 1.08 16 9 C -0.47 -12.67 7.44 -34.44 -0.26 -12.93 16 10 H 0.06 1.68 7.82 -52.49 -0.41 1.27 16 11 C 0.07 1.82 5.42 -17.82 -0.10 1.72 16 12 N -0.88 -24.08 13.09 55.43 0.73 -23.36 16 13 Si 0.88 21.08 29.54 -169.99 -5.02 16.06 16 14 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 15 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 16 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 17 C -0.17 -4.00 9.69 -26.73 -0.26 -4.26 16 18 C -0.21 -4.68 9.89 -26.70 -0.26 -4.95 16 19 C -0.11 -1.84 2.07 -90.62 -0.19 -2.03 16 20 C -0.15 -2.70 8.22 37.16 0.31 -2.39 16 21 C -0.14 -1.87 8.58 37.16 0.32 -1.55 16 22 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 23 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 25 H 0.04 0.50 6.85 -51.93 -0.36 0.14 16 26 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.36 8.29 6.75 -39.30 -0.27 8.02 16 28 H 0.04 0.87 6.14 -51.93 -0.32 0.55 16 29 H 0.03 0.66 7.77 -51.93 -0.40 0.26 16 30 H 0.26 6.81 8.32 -40.82 -0.34 6.47 16 31 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 32 H 0.08 1.95 8.14 -51.93 -0.42 1.52 16 33 H 0.06 1.28 8.08 -51.93 -0.42 0.86 16 34 H 0.07 1.65 8.14 -51.93 -0.42 1.22 16 35 H 0.08 1.41 7.59 -51.93 -0.39 1.02 16 36 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.08 1.73 6.05 -51.92 -0.31 1.42 16 39 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.05 0.67 6.86 -51.93 -0.36 0.31 16 LS Contribution 325.45 15.07 4.90 4.90 Total: -1.00 -27.18 325.45 -7.33 -34.52 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -7.41 Total: 7.47 kcal Atomic # 6 Polarization: -19.18 SS G_CDS: 0.43 Total: -18.75 kcal Atomic # 7 Polarization: -37.84 SS G_CDS: 0.11 Total: -37.73 kcal Atomic # 8 Polarization: -6.13 SS G_CDS: -0.35 Total: -6.47 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -27.18 -7.33 -34.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083854488.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.222 kcal (2) G-P(sol) polarization free energy of solvation -27.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds