Wall clock time and date at job start Sun Mar 29 2020 22:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 109.46850 * 2 1 4 4 C 1.53008 * 109.46850 * 179.97438 * 3 2 1 5 5 N 1.46906 * 109.46874 * 185.16076 * 4 3 2 6 6 C 1.46899 * 110.99759 * 299.94523 * 5 4 3 7 7 C 1.53003 * 109.47124 * 300.28533 * 6 5 4 8 8 O 1.42894 * 109.47285 * 69.09286 * 7 6 5 9 9 C 1.46900 * 110.99593 * 175.99348 * 5 4 3 10 10 C 1.53005 * 109.46830 * 195.30484 * 9 5 4 11 11 C 1.50692 * 115.54730 * 53.80349 * 10 9 5 12 12 H 1.08000 * 119.99594 * 215.57626 * 11 10 9 13 13 C 1.37876 * 120.00440 * 35.30409 * 11 10 9 14 14 N 1.31508 * 119.99934 * 355.75632 * 13 11 10 15 15 Si 1.86800 * 120.00185 * 175.75946 * 13 11 10 16 16 H 1.48504 * 109.46814 * 59.99764 * 15 13 11 17 17 H 1.48501 * 109.47134 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.47181 * 300.00006 * 15 13 11 19 19 C 1.52997 * 117.49633 * 199.47241 * 10 9 5 20 20 C 1.53001 * 117.49599 * 268.12934 * 10 9 5 21 21 H 1.08997 * 109.46819 * 299.99926 * 1 2 3 22 22 H 1.09002 * 109.47095 * 59.99522 * 1 2 3 23 23 H 1.08992 * 109.47038 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.46819 * 240.00074 * 2 1 3 25 25 H 1.08996 * 109.46696 * 119.99668 * 2 1 3 26 26 H 1.08997 * 109.47349 * 60.00398 * 3 2 1 27 27 H 1.08990 * 109.47379 * 299.99772 * 3 2 1 28 28 H 1.08996 * 109.46946 * 65.15816 * 4 3 2 29 29 H 1.09000 * 109.46915 * 305.15337 * 4 3 2 30 30 H 1.08998 * 109.47547 * 60.28121 * 6 5 4 31 31 H 1.09003 * 109.46773 * 180.28706 * 6 5 4 32 32 H 1.09002 * 109.47045 * 189.09969 * 7 6 5 33 33 H 1.09009 * 109.46939 * 309.09144 * 7 6 5 34 34 H 0.96701 * 114.00085 * 184.98839 * 8 7 6 35 35 H 1.08999 * 109.47297 * 75.30298 * 9 5 4 36 36 H 1.09002 * 109.47263 * 315.30825 * 9 5 4 37 37 H 0.97003 * 120.00258 * 184.99911 * 14 13 11 38 38 H 1.08994 * 117.49881 * 215.00287 * 19 10 9 39 39 H 1.09002 * 117.49872 * 0.02562 * 19 10 9 40 40 H 1.09002 * 117.49921 * 359.97438 * 20 10 9 41 41 H 1.09002 * 117.49171 * 144.97761 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 7 4.0597 2.8220 0.1252 6 6 3.5901 3.6502 -0.9935 7 6 4.0961 3.0611 -2.3117 8 8 3.4329 1.8209 -2.5649 9 6 5.5249 2.8535 0.2249 10 6 5.9724 4.2272 0.7288 11 6 5.3333 4.6880 2.0133 12 1 5.1043 5.7335 2.1577 13 6 5.0358 3.7742 3.0020 14 7 5.2323 2.4910 2.7920 15 14 4.3536 4.3589 4.6397 16 1 3.0718 5.0743 4.4148 17 1 4.1186 3.1893 5.5240 18 1 5.3273 5.2780 5.2818 19 6 7.4262 4.6325 0.4778 20 6 6.2987 5.2923 -0.3200 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.6767 1.9563 0.8900 27 1 1.6767 1.9563 -0.8899 28 1 3.9338 1.0106 -0.9317 29 1 3.9330 0.8509 0.8411 30 1 2.5003 3.6697 -0.9989 31 1 3.9711 4.6651 -0.8791 32 1 3.8879 3.7570 -3.1244 33 1 5.1709 2.8914 -2.2451 34 1 3.7589 1.3528 -3.3458 35 1 5.9600 2.6672 -0.7570 36 1 5.8583 2.0845 0.9218 37 1 4.9561 1.8425 3.4585 38 1 7.9204 5.2325 1.2418 39 1 8.0637 3.9207 -0.0466 40 1 6.1951 5.0143 -1.3688 41 1 6.0508 6.3265 -0.0808 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083855160.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:46:12 Heat of formation + Delta-G solvation = -20.763743 kcal Electronic energy + Delta-G solvation = -18982.097023 eV Core-core repulsion = 16284.089813 eV Total energy + Delta-G solvation = -2698.007209 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.43622 -36.25231 -35.12881 -33.43041 -31.94406 -28.97919 -27.79620 -25.38140 -24.32141 -22.79895 -21.12201 -20.90136 -19.36735 -18.56034 -17.17385 -15.97826 -15.66426 -14.71190 -14.46810 -14.19643 -13.89040 -13.42832 -13.15537 -12.82579 -12.59113 -12.18550 -11.75544 -11.50223 -11.31156 -11.14460 -10.86418 -10.82490 -10.56206 -10.47767 -10.42066 -10.29755 -10.21603 -10.02051 -9.80822 -9.26063 -9.14512 -8.70647 -8.52589 -8.00227 -6.77068 -5.73407 -3.83349 3.41351 3.45404 3.48804 4.54397 4.65255 4.97997 5.27662 5.44169 5.49869 5.61031 5.63928 5.68513 5.82276 5.85637 6.05144 6.18149 6.19807 6.26033 6.30584 6.43584 6.46384 6.56422 6.59237 6.67813 6.71056 6.75118 6.81080 6.93304 6.98938 7.13939 7.17472 7.32949 7.42240 7.74812 7.91606 8.15203 8.43083 8.52332 8.71053 9.11152 9.76626 11.21725 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.018038 B = 0.010138 C = 0.007143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.912560 B = 2761.276673 C = 3918.775611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.118 4.118 3 C -0.106 4.106 4 C 0.060 3.940 5 N -0.485 5.485 6 C 0.054 3.946 7 C 0.033 3.967 8 O -0.557 6.557 9 C 0.106 3.894 10 C 0.068 3.932 11 C -0.474 4.474 12 H 0.051 0.949 13 C 0.087 3.913 14 N -0.869 5.869 15 Si 0.889 3.111 16 H -0.279 1.279 17 H -0.290 1.290 18 H -0.282 1.282 19 C -0.213 4.213 20 C -0.220 4.220 21 H 0.051 0.949 22 H 0.049 0.951 23 H 0.045 0.955 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.043 0.957 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.089 0.911 32 H 0.032 0.968 33 H 0.047 0.953 34 H 0.359 0.641 35 H -0.019 1.019 36 H 0.115 0.885 37 H 0.255 0.745 38 H 0.075 0.925 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.051 -3.530 -8.330 9.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.156 4.156 3 C -0.143 4.143 4 C -0.067 4.067 5 N -0.205 5.205 6 C -0.075 4.075 7 C -0.046 4.046 8 O -0.361 6.361 9 C -0.021 4.021 10 C 0.067 3.933 11 C -0.511 4.511 12 H 0.070 0.930 13 C -0.116 4.116 14 N -0.506 5.506 15 Si 0.718 3.282 16 H -0.205 1.205 17 H -0.215 1.215 18 H -0.208 1.208 19 C -0.251 4.251 20 C -0.258 4.258 21 H 0.070 0.930 22 H 0.068 0.932 23 H 0.064 0.936 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.061 0.939 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.107 0.893 32 H 0.051 0.949 33 H 0.065 0.935 34 H 0.205 0.795 35 H -0.001 1.001 36 H 0.133 0.867 37 H 0.066 0.934 38 H 0.094 0.906 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.543 -3.345 -7.191 9.140 hybrid contribution 0.355 0.012 -0.529 0.637 sum -4.188 -3.333 -7.720 9.394 Atomic orbital electron populations 1.21751 0.96812 1.00546 1.01442 1.21437 0.94845 0.98189 1.01174 1.21496 0.96491 0.95004 1.01342 1.22170 0.93990 0.90683 0.99881 1.61779 1.11506 1.08968 1.38280 1.22390 1.00264 0.98581 0.86294 1.23181 0.96738 0.85216 0.99459 1.86749 1.64514 1.35464 1.49383 1.21813 0.85445 0.99680 0.95135 1.19030 0.90788 0.90389 0.93065 1.20226 1.40078 0.93332 0.97498 0.93041 1.24743 0.94359 0.94775 0.97700 1.69779 1.46318 1.00329 1.34164 0.86734 0.79383 0.77949 0.84169 1.20460 1.21535 1.20764 1.22996 0.94396 1.04533 1.03202 1.22936 1.07899 0.99185 0.95737 0.93035 0.93177 0.93616 0.92668 0.92633 0.92471 0.92283 0.93887 0.91833 0.91558 0.89260 0.94939 0.93514 0.79546 1.00087 0.86689 0.93406 0.90597 0.92128 0.92104 0.90980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.91 37.16 0.37 -1.57 16 2 C -0.12 -1.79 5.93 -26.73 -0.16 -1.95 16 3 C -0.11 -1.88 4.52 -26.73 -0.12 -2.00 16 4 C 0.06 1.20 4.37 -3.82 -0.02 1.19 16 5 N -0.48 -10.57 4.03 -234.61 -0.95 -11.51 16 6 C 0.05 1.04 5.36 -3.82 -0.02 1.02 16 7 C 0.03 0.54 6.85 37.16 0.25 0.79 16 8 O -0.56 -8.32 9.30 -35.23 -0.33 -8.65 16 9 C 0.11 2.48 3.77 -3.82 -0.01 2.46 16 10 C 0.07 1.66 1.64 -155.66 -0.26 1.41 16 11 C -0.47 -12.86 8.74 -34.44 -0.30 -13.16 16 12 H 0.05 1.42 7.82 -52.49 -0.41 1.01 16 13 C 0.09 2.36 5.30 -17.82 -0.09 2.26 16 14 N -0.87 -23.49 10.10 55.43 0.56 -22.94 16 15 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 16 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 17 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 19 C -0.21 -4.82 9.96 -26.70 -0.27 -5.09 16 20 C -0.22 -4.76 8.38 -26.69 -0.22 -4.98 16 21 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 22 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 26 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 27 H 0.06 1.05 5.85 -51.93 -0.30 0.75 16 28 H 0.04 0.83 5.31 -51.93 -0.28 0.55 16 29 H 0.06 1.40 8.01 -51.93 -0.42 0.98 16 30 H 0.07 1.26 6.44 -51.93 -0.33 0.92 16 31 H 0.09 1.81 6.09 -51.93 -0.32 1.50 16 32 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.05 0.80 5.93 -51.92 -0.31 0.49 16 34 H 0.36 3.80 9.12 45.56 0.42 4.22 16 35 H -0.02 -0.41 5.76 -51.93 -0.30 -0.71 16 36 H 0.12 2.99 5.73 -51.93 -0.30 2.70 16 37 H 0.26 6.76 8.32 -40.82 -0.34 6.43 16 38 H 0.08 1.74 8.14 -51.93 -0.42 1.32 16 39 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 40 H 0.06 1.21 8.09 -51.93 -0.42 0.79 16 41 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 LS Contribution 312.92 15.07 4.72 4.72 Total: -1.00 -27.65 312.92 -8.20 -35.85 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -6.33 Total: 5.76 kcal Atomic # 6 Polarization: -18.78 SS G_CDS: -0.85 Total: -19.63 kcal Atomic # 7 Polarization: -34.06 SS G_CDS: -0.39 Total: -34.45 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: -0.33 Total: -8.65 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -27.65 -8.20 -35.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083855160.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.081 kcal (2) G-P(sol) polarization free energy of solvation -27.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds