Wall clock time and date at job start Sun Mar 29 2020 22:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 109.46850 * 2 1 4 4 C 1.53008 * 109.46850 * 179.97438 * 3 2 1 5 5 N 1.46906 * 109.46874 * 185.16076 * 4 3 2 6 6 C 1.46899 * 110.99759 * 299.94523 * 5 4 3 7 7 C 1.53003 * 109.47124 * 300.28533 * 6 5 4 8 8 O 1.42894 * 109.47285 * 69.09286 * 7 6 5 9 9 C 1.46900 * 110.99593 * 175.99348 * 5 4 3 10 10 C 1.53005 * 109.46830 * 195.30484 * 9 5 4 11 11 C 1.50692 * 115.54730 * 53.80349 * 10 9 5 12 12 H 1.08000 * 119.99594 * 215.57626 * 11 10 9 13 13 C 1.37876 * 120.00440 * 35.30409 * 11 10 9 14 14 N 1.31508 * 119.99934 * 355.75632 * 13 11 10 15 15 Si 1.86800 * 120.00185 * 175.75946 * 13 11 10 16 16 H 1.48504 * 109.46814 * 59.99764 * 15 13 11 17 17 H 1.48501 * 109.47134 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.47181 * 300.00006 * 15 13 11 19 19 C 1.52997 * 117.49633 * 199.47241 * 10 9 5 20 20 C 1.53001 * 117.49599 * 268.12934 * 10 9 5 21 21 H 1.08997 * 109.46819 * 299.99926 * 1 2 3 22 22 H 1.09002 * 109.47095 * 59.99522 * 1 2 3 23 23 H 1.08992 * 109.47038 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.46819 * 240.00074 * 2 1 3 25 25 H 1.08996 * 109.46696 * 119.99668 * 2 1 3 26 26 H 1.08997 * 109.47349 * 60.00398 * 3 2 1 27 27 H 1.08990 * 109.47379 * 299.99772 * 3 2 1 28 28 H 1.08996 * 109.46946 * 65.15816 * 4 3 2 29 29 H 1.09000 * 109.46915 * 305.15337 * 4 3 2 30 30 H 1.08998 * 109.47547 * 60.28121 * 6 5 4 31 31 H 1.09003 * 109.46773 * 180.28706 * 6 5 4 32 32 H 1.09002 * 109.47045 * 189.09969 * 7 6 5 33 33 H 1.09009 * 109.46939 * 309.09144 * 7 6 5 34 34 H 0.96701 * 114.00085 * 184.98839 * 8 7 6 35 35 H 1.08999 * 109.47297 * 75.30298 * 9 5 4 36 36 H 1.09002 * 109.47263 * 315.30825 * 9 5 4 37 37 H 0.97003 * 120.00258 * 184.99911 * 14 13 11 38 38 H 1.08994 * 117.49881 * 215.00287 * 19 10 9 39 39 H 1.09002 * 117.49872 * 0.02562 * 19 10 9 40 40 H 1.09002 * 117.49921 * 359.97438 * 20 10 9 41 41 H 1.09002 * 117.49171 * 144.97761 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 7 4.0597 2.8220 0.1252 6 6 3.5901 3.6502 -0.9935 7 6 4.0961 3.0611 -2.3117 8 8 3.4329 1.8209 -2.5649 9 6 5.5249 2.8535 0.2249 10 6 5.9724 4.2272 0.7288 11 6 5.3333 4.6880 2.0133 12 1 5.1043 5.7335 2.1577 13 6 5.0358 3.7742 3.0020 14 7 5.2323 2.4910 2.7920 15 14 4.3536 4.3589 4.6397 16 1 3.0718 5.0743 4.4148 17 1 4.1186 3.1893 5.5240 18 1 5.3273 5.2780 5.2818 19 6 7.4262 4.6325 0.4778 20 6 6.2987 5.2923 -0.3200 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.6767 1.9563 0.8900 27 1 1.6767 1.9563 -0.8899 28 1 3.9338 1.0106 -0.9317 29 1 3.9330 0.8509 0.8411 30 1 2.5003 3.6697 -0.9989 31 1 3.9711 4.6651 -0.8791 32 1 3.8879 3.7570 -3.1244 33 1 5.1709 2.8914 -2.2451 34 1 3.7589 1.3528 -3.3458 35 1 5.9600 2.6672 -0.7570 36 1 5.8583 2.0845 0.9218 37 1 4.9561 1.8425 3.4585 38 1 7.9204 5.2325 1.2418 39 1 8.0637 3.9207 -0.0466 40 1 6.1951 5.0143 -1.3688 41 1 6.0508 6.3265 -0.0808 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083855160.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:46:11 Heat of formation + Delta-G solvation = -37.801844 kcal Electronic energy + Delta-G solvation = -18982.835850 eV Core-core repulsion = 16284.089813 eV Total energy + Delta-G solvation = -2698.746037 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.00328 -37.86102 -36.47383 -34.83739 -33.97845 -30.35087 -29.33065 -27.38632 -25.90787 -24.20952 -22.88726 -22.27567 -20.98402 -20.34682 -18.41972 -17.88254 -17.18203 -16.45171 -16.02074 -15.83202 -15.47087 -15.03096 -14.54423 -14.37240 -13.94091 -13.56244 -13.33765 -13.19413 -12.86210 -12.78489 -12.77796 -12.32301 -12.22970 -12.13664 -12.02000 -11.84270 -11.74475 -11.58545 -11.33647 -11.02935 -10.78128 -10.44056 -10.38322 -9.93817 -8.38117 -7.75924 -5.92430 1.46583 1.48053 1.53520 2.54033 3.15375 3.44603 3.62698 3.81782 4.17348 4.25836 4.30919 4.40282 4.41965 4.45314 4.55935 4.65485 4.69399 4.83501 4.90953 4.97578 4.97998 5.03538 5.04912 5.13033 5.18551 5.21333 5.27244 5.38428 5.41714 5.50738 5.59210 5.65101 5.69131 5.77291 6.16755 6.53192 6.83239 6.92481 6.95847 7.10991 7.68227 9.14343 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.018038 B = 0.010138 C = 0.007143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.912560 B = 2761.276673 C = 3918.775611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.114 4.114 3 C -0.094 4.094 4 C 0.069 3.931 5 N -0.508 5.508 6 C 0.053 3.947 7 C 0.047 3.953 8 O -0.567 6.567 9 C 0.122 3.878 10 C 0.037 3.963 11 C -0.492 4.492 12 H 0.037 0.963 13 C 0.050 3.950 14 N -0.878 5.878 15 Si 0.936 3.064 16 H -0.281 1.281 17 H -0.288 1.288 18 H -0.280 1.280 19 C -0.212 4.212 20 C -0.195 4.195 21 H 0.045 0.955 22 H 0.056 0.944 23 H 0.065 0.935 24 H 0.065 0.935 25 H 0.047 0.953 26 H 0.031 0.969 27 H 0.062 0.938 28 H 0.055 0.945 29 H 0.034 0.966 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.058 0.942 33 H 0.038 0.962 34 H 0.382 0.618 35 H -0.007 1.007 36 H 0.083 0.917 37 H 0.252 0.748 38 H 0.067 0.933 39 H 0.075 0.925 40 H 0.084 0.916 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.643 -3.776 -9.884 11.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.152 4.152 3 C -0.132 4.132 4 C -0.059 4.059 5 N -0.230 5.230 6 C -0.075 4.075 7 C -0.032 4.032 8 O -0.374 6.374 9 C -0.006 4.006 10 C 0.036 3.964 11 C -0.530 4.530 12 H 0.055 0.945 13 C -0.152 4.152 14 N -0.516 5.516 15 Si 0.764 3.236 16 H -0.207 1.207 17 H -0.213 1.213 18 H -0.206 1.206 19 C -0.251 4.251 20 C -0.232 4.232 21 H 0.064 0.936 22 H 0.075 0.925 23 H 0.084 0.916 24 H 0.084 0.916 25 H 0.066 0.934 26 H 0.049 0.951 27 H 0.081 0.919 28 H 0.072 0.928 29 H 0.052 0.948 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.076 0.924 33 H 0.057 0.943 34 H 0.231 0.769 35 H 0.010 0.990 36 H 0.101 0.899 37 H 0.061 0.939 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.102 0.898 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.130 -3.594 -8.766 10.774 hybrid contribution 0.548 0.102 -0.080 0.563 sum -4.582 -3.492 -8.846 10.556 Atomic orbital electron populations 1.21712 0.95013 1.01894 1.01505 1.21397 0.96394 0.96115 1.01310 1.21381 0.94959 0.96710 1.00123 1.22094 0.95155 0.89607 0.99042 1.61686 1.10707 1.10151 1.40415 1.22305 1.00119 0.97726 0.87385 1.22857 0.95833 0.86164 0.98362 1.86653 1.64519 1.35189 1.51077 1.21472 0.86533 0.97927 0.94636 1.19120 0.91898 0.91980 0.93392 1.20413 1.40715 0.92708 0.99150 0.94476 1.25267 0.94970 0.95039 0.99877 1.69942 1.46638 1.00607 1.34384 0.85987 0.78622 0.77461 0.81494 1.20718 1.21343 1.20556 1.22991 0.93962 1.04737 1.03402 1.22890 1.05768 0.98282 0.96252 0.93605 0.92502 0.91645 0.91601 0.93417 0.95060 0.91907 0.92777 0.94789 0.91616 0.90565 0.92405 0.94342 0.76871 0.98967 0.89900 0.93866 0.91420 0.90699 0.89796 0.91086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.48 9.91 71.98 0.71 -2.77 16 2 C -0.11 -3.30 5.93 30.60 0.18 -3.12 16 3 C -0.09 -3.30 4.52 30.60 0.14 -3.16 16 4 C 0.07 2.72 4.37 86.30 0.38 3.10 16 5 N -0.51 -22.13 4.03 -896.19 -3.61 -25.75 16 6 C 0.05 1.99 5.36 86.30 0.46 2.45 16 7 C 0.05 1.40 6.85 71.98 0.49 1.89 16 8 O -0.57 -15.25 9.30 -148.98 -1.39 -16.63 16 9 C 0.12 5.67 3.77 86.30 0.33 5.99 16 10 C 0.04 1.79 1.64 -52.93 -0.09 1.71 16 11 C -0.49 -27.02 8.74 25.60 0.22 -26.80 16 12 H 0.04 2.08 7.82 -2.91 -0.02 2.06 16 13 C 0.05 2.74 5.30 84.66 0.45 3.19 16 14 N -0.88 -48.47 10.10 21.45 0.22 -48.25 16 15 Si 0.94 44.53 29.54 68.60 2.03 46.55 16 16 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 17 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 18 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 19 C -0.21 -9.44 9.96 30.62 0.30 -9.13 16 20 C -0.19 -8.12 8.38 30.62 0.26 -7.86 16 21 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 22 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 23 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 24 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 25 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.06 2.15 5.85 -2.39 -0.01 2.14 16 28 H 0.05 2.02 5.31 -2.39 -0.01 2.01 16 29 H 0.03 1.53 8.01 -2.39 -0.02 1.51 16 30 H 0.07 2.42 6.44 -2.39 -0.02 2.41 16 31 H 0.08 3.01 6.09 -2.39 -0.01 3.00 16 32 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.04 1.21 5.93 -2.38 -0.01 1.20 16 34 H 0.38 6.70 9.12 -74.06 -0.68 6.03 16 35 H -0.01 -0.31 5.76 -2.39 -0.01 -0.33 16 36 H 0.08 4.40 5.73 -2.39 -0.01 4.39 16 37 H 0.25 13.61 8.32 -92.71 -0.77 12.84 16 38 H 0.07 3.08 8.14 -2.39 -0.02 3.06 16 39 H 0.07 3.08 8.14 -2.39 -0.02 3.06 16 40 H 0.08 3.09 8.09 -2.39 -0.02 3.08 16 41 H 0.07 2.96 8.14 -2.39 -0.02 2.94 16 Total: -1.00 -58.94 312.92 1.40 -57.53 By element: Atomic # 1 Polarization: 20.73 SS G_CDS: 0.32 Total: 21.05 kcal Atomic # 6 Polarization: -38.35 SS G_CDS: 3.84 Total: -34.51 kcal Atomic # 7 Polarization: -70.60 SS G_CDS: -3.40 Total: -74.00 kcal Atomic # 8 Polarization: -15.25 SS G_CDS: -1.39 Total: -16.63 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.55 kcal Total: -58.94 1.40 -57.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083855160.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.733 kcal (2) G-P(sol) polarization free energy of solvation -58.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds