Wall clock time and date at job start Sun Mar 29 2020 22:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46987 * 2 1 4 4 C 1.53001 * 109.47176 * 239.99702 * 2 1 3 5 5 C 1.50707 * 109.46926 * 60.00295 * 4 2 1 6 6 H 1.08004 * 119.99997 * 359.97438 * 5 4 2 7 7 C 1.37874 * 119.99791 * 179.97438 * 5 4 2 8 8 N 1.31513 * 120.00180 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99813 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.46934 * 89.99961 * 9 7 5 11 11 H 1.48497 * 109.46834 * 210.00236 * 9 7 5 12 12 H 1.48498 * 109.46987 * 329.99839 * 9 7 5 13 13 C 1.52999 * 109.46896 * 120.00132 * 2 1 3 14 14 N 1.46894 * 109.47011 * 177.36035 * 13 2 1 15 15 C 1.47844 * 111.00387 * 78.05765 * 14 13 2 16 16 C 1.54901 * 104.80171 * 146.36261 * 15 14 13 17 17 C 1.55144 * 101.65150 * 322.93148 * 16 15 14 18 18 H 1.09003 * 110.85397 * 277.19640 * 17 16 15 19 19 C 1.53001 * 110.70531 * 154.03448 * 17 16 15 20 20 O 1.42898 * 109.47063 * 71.40065 * 19 17 16 21 21 C 1.47448 * 111.00106 * 198.89719 * 14 13 2 22 22 H 1.09000 * 109.47660 * 297.35726 * 1 2 3 23 23 H 1.09008 * 109.47052 * 57.35272 * 1 2 3 24 24 H 1.09002 * 109.47492 * 177.35218 * 1 2 3 25 25 H 1.09000 * 109.46325 * 191.51030 * 3 2 1 26 26 H 1.08994 * 109.47037 * 311.50966 * 3 2 1 27 27 H 1.08995 * 109.47136 * 71.51230 * 3 2 1 28 28 H 1.08999 * 109.47047 * 179.97438 * 4 2 1 29 29 H 1.08995 * 109.47039 * 300.00481 * 4 2 1 30 30 H 0.96998 * 120.00216 * 180.02562 * 8 7 5 31 31 H 1.09001 * 109.47579 * 57.35651 * 13 2 1 32 32 H 1.09004 * 109.47031 * 297.35466 * 13 2 1 33 33 H 1.08999 * 110.37381 * 265.19383 * 15 14 13 34 34 H 1.09005 * 110.37437 * 27.41832 * 15 14 13 35 35 H 1.08996 * 110.99608 * 204.84038 * 16 15 14 36 36 H 1.08998 * 110.99321 * 81.01858 * 16 15 14 37 37 H 1.09000 * 109.47415 * 311.39830 * 19 17 16 38 38 H 1.09002 * 109.46783 * 191.40043 * 19 17 16 39 39 H 0.96709 * 113.99833 * 179.97438 * 20 19 17 40 40 H 1.08998 * 109.88301 * 117.33436 * 21 14 13 41 41 H 1.09000 * 109.88555 * 356.14957 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 1 0.9165 0.8670 -2.3806 7 6 1.8712 -0.4817 -3.7319 8 7 2.6273 -1.5510 -3.8526 9 14 1.2480 0.3985 -5.2572 10 1 2.2254 1.4409 -5.6612 11 1 1.0838 -0.5808 -6.3614 12 1 -0.0606 1.0350 -4.9614 13 6 2.0399 -0.7213 1.2492 14 7 3.5075 -0.7768 1.2178 15 6 4.0955 0.5207 1.6135 16 6 5.4045 0.1523 2.3552 17 6 4.9829 -1.1329 3.1152 18 1 4.4712 -0.8837 4.0448 19 6 6.1975 -2.0218 3.3900 20 8 7.0147 -1.4149 4.3929 21 6 4.0165 -1.8196 2.1274 22 1 -0.3634 0.4722 0.9127 23 1 -0.3633 0.5544 -0.8654 24 1 -0.3634 -1.0266 -0.0475 25 1 3.1105 1.4493 -0.2051 26 1 1.5190 2.0121 -0.7695 27 1 1.8538 1.8937 0.9746 28 1 3.1300 -0.7209 -1.2494 29 1 1.6766 -1.7489 -1.2492 30 1 2.8623 -1.8820 -4.7335 31 1 1.6384 -1.7344 1.2733 32 1 1.7158 -0.1808 2.1386 33 1 4.3155 1.1224 0.7316 34 1 3.4185 1.0571 2.2786 35 1 5.6942 0.9399 3.0507 36 1 6.2077 -0.0576 1.6488 37 1 6.7754 -2.1411 2.4735 38 1 5.8614 -2.9988 3.7374 39 1 7.8047 -1.9251 4.6183 40 1 4.5483 -2.5814 1.5574 41 1 3.1884 -2.2722 2.6729 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092780723.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:31 Heat of formation + Delta-G solvation = -59.180653 kcal Electronic energy + Delta-G solvation = -18368.580679 eV Core-core repulsion = 15668.907588 eV Total energy + Delta-G solvation = -2699.673091 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.33898 -37.11248 -35.70198 -32.42580 -31.18243 -29.46410 -27.02290 -26.41161 -25.68115 -24.01177 -22.64029 -20.70725 -20.14986 -17.99272 -17.37531 -16.17497 -15.70077 -15.38300 -14.60222 -14.48197 -13.89463 -13.64509 -13.31970 -12.73838 -12.64235 -12.39661 -12.06544 -11.99937 -11.82897 -11.37404 -11.06934 -10.95895 -10.85864 -10.73152 -10.65719 -10.52623 -10.23314 -10.17243 -10.05413 -9.88824 -9.49937 -8.86902 -8.67385 -8.18929 -7.72694 -5.83348 -3.82727 3.39258 3.45699 3.48284 4.04821 4.39286 4.57869 4.70148 4.85878 5.14363 5.32839 5.44025 5.51796 5.53457 5.55210 5.69913 5.71036 5.82348 5.93927 6.02748 6.08439 6.14079 6.17829 6.33777 6.38767 6.41790 6.46025 6.56715 6.80952 6.86315 7.14282 7.30438 7.38148 7.45594 7.50713 7.66399 7.91587 8.12804 8.29090 8.64114 9.24952 9.78813 11.27875 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.032595 B = 0.005537 C = 0.005188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.810993 B = 5055.245587 C = 5396.169404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.058 4.058 3 C -0.130 4.130 4 C 0.045 3.955 5 C -0.508 4.508 6 H 0.054 0.946 7 C 0.055 3.945 8 N -0.896 5.896 9 Si 0.882 3.118 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.276 1.276 13 C 0.065 3.935 14 N -0.510 5.510 15 C 0.040 3.960 16 C -0.120 4.120 17 C -0.111 4.111 18 H 0.077 0.923 19 C 0.087 3.913 20 O -0.575 6.575 21 C 0.050 3.950 22 H 0.026 0.974 23 H 0.063 0.937 24 H 0.044 0.956 25 H 0.061 0.939 26 H 0.052 0.948 27 H 0.023 0.977 28 H 0.034 0.966 29 H 0.007 0.993 30 H 0.256 0.744 31 H 0.064 0.936 32 H 0.021 0.979 33 H 0.091 0.909 34 H 0.042 0.958 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.051 0.949 38 H 0.044 0.956 39 H 0.376 0.624 40 H 0.076 0.924 41 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.963 0.268 14.474 15.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.058 4.058 3 C -0.187 4.187 4 C 0.008 3.992 5 C -0.546 4.546 6 H 0.072 0.928 7 C -0.145 4.145 8 N -0.536 5.536 9 Si 0.711 3.289 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.201 1.201 13 C -0.063 4.063 14 N -0.234 5.234 15 C -0.087 4.087 16 C -0.158 4.158 17 C -0.130 4.130 18 H 0.095 0.905 19 C 0.009 3.991 20 O -0.380 6.380 21 C -0.078 4.078 22 H 0.045 0.955 23 H 0.082 0.918 24 H 0.063 0.937 25 H 0.080 0.920 26 H 0.071 0.929 27 H 0.042 0.958 28 H 0.052 0.948 29 H 0.025 0.975 30 H 0.066 0.934 31 H 0.082 0.918 32 H 0.039 0.961 33 H 0.109 0.891 34 H 0.060 0.940 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.069 0.931 38 H 0.062 0.938 39 H 0.223 0.777 40 H 0.095 0.905 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.685 0.485 13.791 14.573 hybrid contribution -0.210 0.082 -0.122 0.256 sum 4.475 0.567 13.670 14.395 Atomic orbital electron populations 1.21739 0.95957 1.00874 0.99852 1.20598 0.93929 0.95250 0.96068 1.22011 1.01852 0.96312 0.98523 1.19021 0.97378 0.94036 0.88734 1.21366 1.30387 1.11734 0.91133 0.92811 1.24980 0.95585 0.95130 0.98778 1.69980 1.37496 1.23212 1.22919 0.86757 0.79164 0.79472 0.83542 1.20925 1.21500 1.20110 1.22494 0.86518 1.00087 0.97179 1.63506 1.07461 1.03681 1.48716 1.23404 0.94207 0.92224 0.98892 1.22761 0.98169 0.96484 0.98394 1.22393 0.95257 0.96390 0.98969 0.90468 1.22183 0.91555 0.94872 0.90521 1.86480 1.39563 1.51962 1.60009 1.22804 0.96821 0.95668 0.92497 0.95468 0.91781 0.93684 0.91982 0.92865 0.95795 0.94775 0.97466 0.93391 0.91785 0.96133 0.89119 0.93999 0.91198 0.90768 0.93064 0.93757 0.77730 0.90528 0.93005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.44 8.14 37.16 0.30 -2.14 16 2 C -0.06 -1.19 0.60 -154.51 -0.09 -1.28 16 3 C -0.13 -2.51 6.68 37.16 0.25 -2.26 16 4 C 0.05 1.17 3.83 -27.88 -0.11 1.06 16 5 C -0.51 -14.17 7.79 -34.44 -0.27 -14.44 16 6 H 0.05 1.46 5.74 -52.48 -0.30 1.16 16 7 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -27.31 13.29 55.43 0.74 -26.58 16 9 Si 0.88 21.97 29.54 -169.99 -5.02 16.95 16 10 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 13 C 0.07 1.16 3.90 -3.83 -0.01 1.15 16 14 N -0.51 -8.82 4.21 -231.26 -0.97 -9.80 16 15 C 0.04 0.62 4.92 -2.30 -0.01 0.61 16 16 C -0.12 -1.61 6.47 -24.59 -0.16 -1.77 16 17 C -0.11 -1.40 3.21 -88.80 -0.28 -1.68 16 18 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 19 C 0.09 0.93 6.33 37.16 0.24 1.16 16 20 O -0.58 -6.11 13.60 -35.23 -0.48 -6.59 16 21 C 0.05 0.72 6.43 -2.84 -0.02 0.71 16 22 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 23 H 0.06 1.32 6.70 -51.92 -0.35 0.97 16 24 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.06 1.22 5.21 -51.93 -0.27 0.95 16 26 H 0.05 1.08 6.99 -51.93 -0.36 0.72 16 27 H 0.02 0.39 7.55 -51.93 -0.39 0.00 16 28 H 0.03 0.96 7.53 -51.93 -0.39 0.57 16 29 H 0.01 0.20 8.14 -51.93 -0.42 -0.23 16 30 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 31 H 0.06 1.14 7.76 -51.93 -0.40 0.74 16 32 H 0.02 0.34 7.58 -51.93 -0.39 -0.05 16 33 H 0.09 1.51 5.81 -51.93 -0.30 1.21 16 34 H 0.04 0.63 6.91 -51.93 -0.36 0.27 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.07 1.02 7.94 -51.93 -0.41 0.61 16 37 H 0.05 0.54 8.00 -51.93 -0.42 0.13 16 38 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.38 2.20 9.12 45.56 0.42 2.62 16 40 H 0.08 1.11 7.82 -51.93 -0.41 0.71 16 41 H 0.05 0.70 7.41 -51.93 -0.39 0.31 16 LS Contribution 310.98 15.07 4.69 4.69 Total: -1.00 -31.42 310.98 -7.72 -39.14 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -6.40 Total: -0.43 kcal Atomic # 6 Polarization: -17.12 SS G_CDS: -0.27 Total: -17.38 kcal Atomic # 7 Polarization: -36.14 SS G_CDS: -0.24 Total: -36.38 kcal Atomic # 8 Polarization: -6.11 SS G_CDS: -0.48 Total: -6.59 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.42 -7.72 -39.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092780723.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.040 kcal (2) G-P(sol) polarization free energy of solvation -31.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds