Wall clock time and date at job start Sun Mar 29 2020 22:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46987 * 2 1 4 4 C 1.53001 * 109.47176 * 239.99702 * 2 1 3 5 5 C 1.50707 * 109.46926 * 60.00295 * 4 2 1 6 6 H 1.08004 * 119.99997 * 359.97438 * 5 4 2 7 7 C 1.37874 * 119.99791 * 179.97438 * 5 4 2 8 8 N 1.31513 * 120.00180 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99813 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.46934 * 89.99961 * 9 7 5 11 11 H 1.48497 * 109.46834 * 210.00236 * 9 7 5 12 12 H 1.48498 * 109.46987 * 329.99839 * 9 7 5 13 13 C 1.52999 * 109.46896 * 120.00132 * 2 1 3 14 14 N 1.46894 * 109.47011 * 177.36035 * 13 2 1 15 15 C 1.47844 * 111.00387 * 78.05765 * 14 13 2 16 16 C 1.54901 * 104.80171 * 146.36261 * 15 14 13 17 17 C 1.55144 * 101.65150 * 322.93148 * 16 15 14 18 18 H 1.09003 * 110.85397 * 277.19640 * 17 16 15 19 19 C 1.53001 * 110.70531 * 154.03448 * 17 16 15 20 20 O 1.42898 * 109.47063 * 71.40065 * 19 17 16 21 21 C 1.47448 * 111.00106 * 198.89719 * 14 13 2 22 22 H 1.09000 * 109.47660 * 297.35726 * 1 2 3 23 23 H 1.09008 * 109.47052 * 57.35272 * 1 2 3 24 24 H 1.09002 * 109.47492 * 177.35218 * 1 2 3 25 25 H 1.09000 * 109.46325 * 191.51030 * 3 2 1 26 26 H 1.08994 * 109.47037 * 311.50966 * 3 2 1 27 27 H 1.08995 * 109.47136 * 71.51230 * 3 2 1 28 28 H 1.08999 * 109.47047 * 179.97438 * 4 2 1 29 29 H 1.08995 * 109.47039 * 300.00481 * 4 2 1 30 30 H 0.96998 * 120.00216 * 180.02562 * 8 7 5 31 31 H 1.09001 * 109.47579 * 57.35651 * 13 2 1 32 32 H 1.09004 * 109.47031 * 297.35466 * 13 2 1 33 33 H 1.08999 * 110.37381 * 265.19383 * 15 14 13 34 34 H 1.09005 * 110.37437 * 27.41832 * 15 14 13 35 35 H 1.08996 * 110.99608 * 204.84038 * 16 15 14 36 36 H 1.08998 * 110.99321 * 81.01858 * 16 15 14 37 37 H 1.09000 * 109.47415 * 311.39830 * 19 17 16 38 38 H 1.09002 * 109.46783 * 191.40043 * 19 17 16 39 39 H 0.96709 * 113.99833 * 179.97438 * 20 19 17 40 40 H 1.08998 * 109.88301 * 117.33436 * 21 14 13 41 41 H 1.09000 * 109.88555 * 356.14957 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 1 0.9165 0.8670 -2.3806 7 6 1.8712 -0.4817 -3.7319 8 7 2.6273 -1.5510 -3.8526 9 14 1.2480 0.3985 -5.2572 10 1 2.2254 1.4409 -5.6612 11 1 1.0838 -0.5808 -6.3614 12 1 -0.0606 1.0350 -4.9614 13 6 2.0399 -0.7213 1.2492 14 7 3.5075 -0.7768 1.2178 15 6 4.0955 0.5207 1.6135 16 6 5.4045 0.1523 2.3552 17 6 4.9829 -1.1329 3.1152 18 1 4.4712 -0.8837 4.0448 19 6 6.1975 -2.0218 3.3900 20 8 7.0147 -1.4149 4.3929 21 6 4.0165 -1.8196 2.1274 22 1 -0.3634 0.4722 0.9127 23 1 -0.3633 0.5544 -0.8654 24 1 -0.3634 -1.0266 -0.0475 25 1 3.1105 1.4493 -0.2051 26 1 1.5190 2.0121 -0.7695 27 1 1.8538 1.8937 0.9746 28 1 3.1300 -0.7209 -1.2494 29 1 1.6766 -1.7489 -1.2492 30 1 2.8623 -1.8820 -4.7335 31 1 1.6384 -1.7344 1.2733 32 1 1.7158 -0.1808 2.1386 33 1 4.3155 1.1224 0.7316 34 1 3.4185 1.0571 2.2786 35 1 5.6942 0.9399 3.0507 36 1 6.2077 -0.0576 1.6488 37 1 6.7754 -2.1411 2.4735 38 1 5.8614 -2.9988 3.7374 39 1 7.8047 -1.9251 4.6183 40 1 4.5483 -2.5814 1.5574 41 1 3.1884 -2.2722 2.6729 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092780723.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:30 Heat of formation + Delta-G solvation = -81.311686 kcal Electronic energy + Delta-G solvation = -18369.540353 eV Core-core repulsion = 15668.907588 eV Total energy + Delta-G solvation = -2700.632765 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.58441 -38.28645 -36.95154 -34.48021 -32.49395 -30.62142 -29.07849 -27.90107 -26.97729 -25.30691 -24.54426 -21.92848 -21.19378 -19.62063 -18.28094 -18.21990 -16.86329 -16.75364 -16.33576 -15.67301 -15.33608 -14.92992 -14.70278 -14.26698 -14.19319 -13.81594 -13.52224 -13.40636 -13.24591 -12.90077 -12.69043 -12.63455 -12.29885 -12.25400 -12.21425 -12.00624 -11.75517 -11.62698 -11.52214 -11.16284 -10.81986 -10.69188 -10.64384 -10.41444 -9.01774 -8.06029 -6.12482 1.41528 1.42040 1.52239 2.47677 3.10976 3.27072 3.27696 3.69585 3.80232 4.14209 4.20237 4.27550 4.37926 4.43950 4.49385 4.52835 4.58534 4.69291 4.71495 4.82254 4.86683 4.94272 4.96560 5.01884 5.10418 5.13436 5.20243 5.29736 5.36859 5.54756 5.60403 5.67317 5.75799 6.01603 6.11814 6.22428 6.34421 6.46833 6.92043 7.05966 7.53810 9.05737 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.032595 B = 0.005537 C = 0.005188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.810993 B = 5055.245587 C = 5396.169404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.058 4.058 3 C -0.122 4.122 4 C 0.059 3.941 5 C -0.515 4.515 6 H 0.060 0.940 7 C -0.003 4.003 8 N -0.936 5.936 9 Si 0.950 3.050 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.264 1.264 13 C 0.073 3.927 14 N -0.542 5.542 15 C 0.041 3.959 16 C -0.114 4.114 17 C -0.103 4.103 18 H 0.081 0.919 19 C 0.090 3.910 20 O -0.590 6.590 21 C 0.050 3.950 22 H 0.061 0.939 23 H 0.045 0.955 24 H 0.038 0.962 25 H 0.051 0.949 26 H 0.038 0.962 27 H 0.055 0.945 28 H 0.002 0.998 29 H -0.029 1.029 30 H 0.257 0.743 31 H 0.058 0.942 32 H 0.044 0.956 33 H 0.072 0.928 34 H 0.052 0.948 35 H 0.082 0.918 36 H 0.065 0.935 37 H 0.049 0.951 38 H 0.060 0.940 39 H 0.397 0.603 40 H 0.068 0.932 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.621 1.225 15.875 16.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.059 4.059 3 C -0.179 4.179 4 C 0.022 3.978 5 C -0.554 4.554 6 H 0.078 0.922 7 C -0.200 4.200 8 N -0.578 5.578 9 Si 0.776 3.224 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.189 1.189 13 C -0.055 4.055 14 N -0.265 5.265 15 C -0.086 4.086 16 C -0.152 4.152 17 C -0.122 4.122 18 H 0.100 0.900 19 C 0.012 3.988 20 O -0.398 6.398 21 C -0.077 4.077 22 H 0.080 0.920 23 H 0.065 0.935 24 H 0.057 0.943 25 H 0.070 0.930 26 H 0.057 0.943 27 H 0.073 0.927 28 H 0.021 0.979 29 H -0.010 1.010 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.062 0.938 33 H 0.090 0.910 34 H 0.071 0.929 35 H 0.100 0.900 36 H 0.084 0.916 37 H 0.067 0.933 38 H 0.078 0.922 39 H 0.247 0.753 40 H 0.087 0.913 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.352 1.446 15.210 15.887 hybrid contribution -0.064 -0.243 -0.535 0.590 sum 4.288 1.203 14.676 15.337 Atomic orbital electron populations 1.21665 0.94864 1.00641 1.00780 1.20529 0.94863 0.95684 0.94823 1.21913 1.00924 0.95316 0.99752 1.18789 0.95193 0.92579 0.91210 1.21758 1.29836 1.11714 0.92070 0.92231 1.25859 0.95891 0.95914 1.02290 1.70129 1.39058 1.24963 1.23647 0.85670 0.79030 0.78287 0.79393 1.20252 1.21326 1.18866 1.22323 0.87096 0.99669 0.96412 1.63384 1.07244 1.05211 1.50701 1.23341 0.95352 0.91393 0.98469 1.22704 0.96857 0.97368 0.98297 1.22308 0.95686 0.95936 0.98294 0.90047 1.22079 0.90939 0.94984 0.90754 1.86416 1.40713 1.52918 1.59770 1.22783 0.97528 0.94917 0.92503 0.92011 0.93545 0.94265 0.92984 0.94323 0.92657 0.97945 1.01045 0.93425 0.92326 0.93767 0.90997 0.92950 0.89985 0.91588 0.93262 0.92182 0.75335 0.91321 0.91989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.55 8.14 71.98 0.59 -3.96 16 2 C -0.06 -2.37 0.60 -52.18 -0.03 -2.40 16 3 C -0.12 -4.58 6.68 71.98 0.48 -4.10 16 4 C 0.06 3.16 3.83 29.85 0.11 3.27 16 5 C -0.52 -29.24 7.79 25.60 0.20 -29.05 16 6 H 0.06 3.25 5.74 -2.91 -0.02 3.23 16 7 C 0.00 -0.19 5.46 84.65 0.46 0.28 16 8 N -0.94 -58.63 13.29 21.45 0.28 -58.34 16 9 Si 0.95 45.45 29.54 68.60 2.03 47.48 16 10 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 11 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 12 H -0.26 -12.04 7.11 99.48 0.71 -11.34 16 13 C 0.07 2.52 3.90 86.30 0.34 2.86 16 14 N -0.54 -18.52 4.21 -885.56 -3.73 -22.25 16 15 C 0.04 1.24 4.92 86.77 0.43 1.67 16 16 C -0.11 -2.92 6.47 31.98 0.21 -2.71 16 17 C -0.10 -2.41 3.21 -9.61 -0.03 -2.44 16 18 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 19 C 0.09 1.76 6.33 71.98 0.46 2.22 16 20 O -0.59 -11.12 13.60 -148.98 -2.03 -13.15 16 21 C 0.05 1.40 6.43 86.64 0.56 1.96 16 22 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 23 H 0.05 1.87 6.70 -2.38 -0.02 1.85 16 24 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 25 H 0.05 2.05 5.21 -2.39 -0.01 2.04 16 26 H 0.04 1.53 6.99 -2.39 -0.02 1.51 16 27 H 0.05 1.71 7.55 -2.39 -0.02 1.69 16 28 H 0.00 0.13 7.53 -2.39 -0.02 0.11 16 29 H -0.03 -1.72 8.14 -2.39 -0.02 -1.74 16 30 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 31 H 0.06 2.06 7.76 -2.39 -0.02 2.04 16 32 H 0.04 1.33 7.58 -2.38 -0.02 1.31 16 33 H 0.07 2.40 5.81 -2.39 -0.01 2.39 16 34 H 0.05 1.44 6.91 -2.38 -0.02 1.43 16 35 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.07 1.78 7.94 -2.39 -0.02 1.76 16 37 H 0.05 0.98 8.00 -2.39 -0.02 0.96 16 38 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.40 3.69 9.12 -74.05 -0.68 3.01 16 40 H 0.07 1.99 7.82 -2.39 -0.02 1.97 16 41 H 0.06 1.58 7.41 -2.39 -0.02 1.56 16 Total: -1.00 -68.09 310.98 0.64 -67.46 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: 0.32 Total: 11.21 kcal Atomic # 6 Polarization: -36.17 SS G_CDS: 3.76 Total: -32.41 kcal Atomic # 7 Polarization: -77.15 SS G_CDS: -3.45 Total: -80.59 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: -2.03 Total: -13.15 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -68.09 0.64 -67.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092780723.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.856 kcal (2) G-P(sol) polarization free energy of solvation -68.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds