Wall clock time and date at job start Sun Mar 29 2020 22:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47213 * 2 1 4 4 C 1.53003 * 109.46888 * 240.00184 * 2 1 3 5 5 C 1.50702 * 109.47204 * 60.00015 * 4 2 1 6 6 H 1.08003 * 119.99486 * 0.02562 * 5 4 2 7 7 C 1.37874 * 120.00280 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99621 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00124 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47244 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47206 * 119.99885 * 9 7 5 12 12 H 1.48506 * 109.46987 * 239.99853 * 9 7 5 13 13 C 1.53000 * 109.47090 * 120.00434 * 2 1 3 14 14 N 1.46893 * 109.47181 * 292.99078 * 13 2 1 15 15 C 1.48063 * 111.16217 * 61.40267 * 14 13 2 16 16 C 1.53990 * 107.14395 * 145.63231 * 15 14 13 17 17 C 1.54600 * 105.14023 * 358.91740 * 16 15 14 18 18 H 1.09002 * 110.72646 * 96.39979 * 17 16 15 19 19 C 1.53001 * 110.72352 * 219.68205 * 17 16 15 20 20 O 1.42899 * 109.47391 * 288.50293 * 19 17 16 21 21 C 1.48533 * 111.00359 * 178.79589 * 14 13 2 22 22 H 1.09004 * 109.46905 * 316.51547 * 1 2 3 23 23 H 1.08989 * 109.47336 * 76.51969 * 1 2 3 24 24 H 1.09004 * 109.47296 * 196.52366 * 1 2 3 25 25 H 1.09002 * 109.47053 * 179.97438 * 3 2 1 26 26 H 1.08992 * 109.47119 * 300.00273 * 3 2 1 27 27 H 1.09000 * 109.47017 * 60.00595 * 3 2 1 28 28 H 1.09006 * 109.47197 * 180.02562 * 4 2 1 29 29 H 1.09000 * 109.47280 * 300.00165 * 4 2 1 30 30 H 0.96999 * 119.99875 * 179.97438 * 8 7 5 31 31 H 1.09005 * 109.47129 * 172.99433 * 13 2 1 32 32 H 1.09000 * 109.47421 * 52.99738 * 13 2 1 33 33 H 1.08995 * 109.75904 * 26.31849 * 15 14 13 34 34 H 1.08997 * 110.15601 * 265.16849 * 15 14 13 35 35 H 1.08998 * 110.31222 * 240.00300 * 16 15 14 36 36 H 1.09009 * 110.31114 * 117.82857 * 16 15 14 37 37 H 1.09004 * 109.47069 * 48.50262 * 19 17 16 38 38 H 1.09004 * 109.46619 * 168.49934 * 19 17 16 39 39 H 0.96693 * 113.99832 * 180.02562 * 20 19 17 40 40 H 1.09001 * 110.66805 * 81.84002 * 21 14 13 41 41 H 1.08997 * 110.66557 * 318.88800 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4798 6 1 0.9170 0.8676 -2.3805 7 6 1.8710 -0.4814 -3.7320 8 7 2.6279 -1.5502 -3.8527 9 14 1.2489 0.3996 -5.2572 10 1 0.4233 1.5659 -4.8530 11 1 2.4042 0.8665 -6.0650 12 1 0.4241 -0.5335 -6.0661 13 6 2.0400 -0.7213 1.2492 14 7 1.6932 0.0617 2.4427 15 6 0.2260 0.2056 2.5798 16 6 -0.0917 0.2006 4.0866 17 6 1.2745 0.0181 4.7867 18 1 1.6837 0.9814 5.0912 19 6 1.1462 -0.9213 5.9875 20 8 0.4356 -0.2599 7.0361 21 6 2.1481 -0.6234 3.6796 22 1 -0.3633 0.7457 0.7072 23 1 -0.3633 0.2395 -0.9992 24 1 -0.3634 -0.9852 0.2923 25 1 3.1300 1.4424 0.0005 26 1 1.6767 1.9563 -0.8899 27 1 1.6768 1.9563 0.8900 28 1 3.1300 -0.7217 -1.2491 29 1 1.6766 -1.7489 -1.2494 30 1 2.8622 -1.8815 -4.7337 31 1 3.1228 -0.8312 1.1887 32 1 1.5780 -1.7065 1.3140 33 1 -0.2735 -0.6315 2.0923 34 1 -0.1026 1.1445 2.1342 35 1 -0.7556 -0.6287 4.3306 36 1 -0.5441 1.1477 4.3810 37 1 0.6033 -1.8187 5.6905 38 1 2.1399 -1.1979 6.3402 39 1 0.3171 -0.7975 7.8309 40 1 3.2048 -0.4275 3.8615 41 1 1.9625 -1.6956 3.6159 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092780724.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:33 Heat of formation + Delta-G solvation = -52.700342 kcal Electronic energy + Delta-G solvation = -18235.275978 eV Core-core repulsion = 15535.883894 eV Total energy + Delta-G solvation = -2699.392084 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.51814 -37.25567 -35.72355 -32.61143 -31.18172 -29.65098 -27.04454 -26.35862 -25.84311 -24.44510 -22.50270 -20.74591 -20.11296 -17.90932 -17.46506 -16.27784 -16.13084 -15.44648 -14.69888 -14.45886 -13.90068 -13.67949 -13.40064 -13.20663 -12.72572 -12.45260 -12.13140 -12.04834 -11.70223 -11.35061 -11.16645 -11.04991 -10.84468 -10.77385 -10.65448 -10.42918 -10.32873 -10.18613 -10.08391 -9.81522 -9.59694 -8.94228 -8.77444 -8.30158 -8.05054 -5.94719 -3.94425 3.33627 3.41450 3.45207 3.89830 4.30856 4.50488 4.70061 4.83007 4.95778 5.24656 5.28763 5.39175 5.41254 5.45980 5.67743 5.70135 5.75087 5.84875 5.91006 6.04183 6.12461 6.18863 6.26747 6.34687 6.45386 6.58116 6.69694 6.78097 6.91229 7.14217 7.26186 7.29080 7.35395 7.39606 7.50807 7.73332 7.88179 8.05875 8.50612 9.11074 9.68176 11.17071 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.060739 B = 0.004580 C = 0.004460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 460.878943 B = 6112.027702 C = 6275.827391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.056 4.056 3 C -0.114 4.114 4 C 0.034 3.966 5 C -0.505 4.505 6 H 0.060 0.940 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.887 3.113 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.286 1.286 13 C 0.058 3.942 14 N -0.509 5.509 15 C 0.029 3.971 16 C -0.124 4.124 17 C -0.092 4.092 18 H 0.088 0.912 19 C 0.084 3.916 20 O -0.573 6.573 21 C 0.041 3.959 22 H 0.051 0.949 23 H 0.066 0.934 24 H 0.035 0.965 25 H 0.039 0.961 26 H 0.053 0.947 27 H 0.042 0.958 28 H 0.015 0.985 29 H 0.012 0.988 30 H 0.258 0.742 31 H 0.070 0.930 32 H 0.027 0.973 33 H 0.054 0.946 34 H 0.086 0.914 35 H 0.062 0.938 36 H 0.069 0.931 37 H 0.045 0.955 38 H 0.046 0.954 39 H 0.376 0.624 40 H 0.080 0.920 41 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.370 0.776 17.969 18.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.057 4.057 3 C -0.172 4.172 4 C -0.003 4.003 5 C -0.543 4.543 6 H 0.078 0.922 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.715 3.285 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.212 1.212 13 C -0.070 4.070 14 N -0.233 5.233 15 C -0.099 4.099 16 C -0.162 4.162 17 C -0.111 4.111 18 H 0.106 0.894 19 C 0.006 3.994 20 O -0.378 6.378 21 C -0.088 4.088 22 H 0.070 0.930 23 H 0.085 0.915 24 H 0.054 0.946 25 H 0.059 0.941 26 H 0.072 0.928 27 H 0.061 0.939 28 H 0.033 0.967 29 H 0.030 0.970 30 H 0.068 0.932 31 H 0.088 0.912 32 H 0.046 0.954 33 H 0.073 0.927 34 H 0.104 0.896 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.223 0.777 40 H 0.098 0.902 41 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -3.045 1.653 17.309 17.652 hybrid contribution -0.556 -1.068 -0.539 1.319 sum -3.601 0.586 16.770 17.162 Atomic orbital electron populations 1.22419 0.96232 0.99483 1.02435 1.20589 0.94743 0.96189 0.94157 1.21589 0.99843 0.95692 1.00057 1.19118 0.96071 0.94977 0.90165 1.21279 1.30619 1.11844 0.90589 0.92189 1.25016 0.95429 0.95132 0.99053 1.69980 1.37361 1.23313 1.23147 0.86610 0.78611 0.79739 0.83498 1.19756 1.21149 1.21214 1.22473 1.00547 0.93967 0.89968 1.64794 1.11206 1.45845 1.01427 1.23462 0.89453 1.02256 0.94698 1.22511 0.96456 1.02076 0.95189 1.22042 0.96559 0.99584 0.92880 0.89363 1.22207 0.94929 0.94420 0.87802 1.86498 1.78839 1.45161 1.27254 1.23148 0.99452 0.96226 0.89928 0.93005 0.91506 0.94553 0.94139 0.92774 0.93852 0.96680 0.97003 0.93246 0.91166 0.95430 0.92734 0.89564 0.91963 0.91237 0.93705 0.93615 0.77713 0.90169 0.94036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 6.93 37.16 0.26 -2.58 16 2 C -0.06 -1.15 0.54 -154.51 -0.08 -1.23 16 3 C -0.11 -2.28 7.92 37.16 0.29 -1.98 16 4 C 0.03 0.87 4.04 -27.88 -0.11 0.76 16 5 C -0.50 -13.94 7.42 -34.44 -0.26 -14.19 16 6 H 0.06 1.62 5.81 -52.48 -0.31 1.31 16 7 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 8 N -0.90 -27.02 13.29 55.43 0.74 -26.29 16 9 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 10 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 13 C 0.06 1.04 4.02 -3.83 -0.02 1.02 16 14 N -0.51 -7.82 4.30 -230.33 -0.99 -8.82 16 15 C 0.03 0.41 4.52 -2.67 -0.01 0.40 16 16 C -0.12 -1.51 6.45 -25.37 -0.16 -1.67 16 17 C -0.09 -1.06 3.32 -88.76 -0.30 -1.35 16 18 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 19 C 0.08 0.80 6.39 37.16 0.24 1.03 16 20 O -0.57 -5.53 13.60 -35.23 -0.48 -6.01 16 21 C 0.04 0.52 6.00 -1.90 -0.01 0.51 16 22 H 0.05 0.86 4.56 -51.93 -0.24 0.63 16 23 H 0.07 1.41 6.26 -51.93 -0.33 1.09 16 24 H 0.04 0.66 6.95 -51.93 -0.36 0.30 16 25 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.05 1.14 6.62 -51.93 -0.34 0.80 16 27 H 0.04 0.78 7.00 -51.93 -0.36 0.42 16 28 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 31 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.03 0.49 7.87 -51.93 -0.41 0.09 16 33 H 0.05 0.81 5.58 -51.93 -0.29 0.52 16 34 H 0.09 1.27 5.95 -51.93 -0.31 0.96 16 35 H 0.06 0.72 7.72 -51.93 -0.40 0.32 16 36 H 0.07 0.83 8.14 -51.92 -0.42 0.41 16 37 H 0.04 0.40 7.95 -51.93 -0.41 -0.02 16 38 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.38 1.84 9.12 45.56 0.42 2.25 16 40 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 41 H 0.04 0.51 7.89 -51.93 -0.41 0.10 16 LS Contribution 307.76 15.07 4.64 4.64 Total: -1.00 -30.74 307.76 -7.64 -38.38 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -6.27 Total: -0.77 kcal Atomic # 6 Polarization: -17.60 SS G_CDS: -0.26 Total: -17.86 kcal Atomic # 7 Polarization: -34.85 SS G_CDS: -0.25 Total: -35.10 kcal Atomic # 8 Polarization: -5.53 SS G_CDS: -0.48 Total: -6.01 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -30.74 -7.64 -38.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092780724.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.321 kcal (2) G-P(sol) polarization free energy of solvation -30.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds