Wall clock time and date at job start Sun Mar 29 2020 22:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47213 * 2 1 4 4 C 1.53003 * 109.46888 * 240.00184 * 2 1 3 5 5 C 1.50702 * 109.47204 * 60.00015 * 4 2 1 6 6 H 1.08003 * 119.99486 * 0.02562 * 5 4 2 7 7 C 1.37874 * 120.00280 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99621 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00124 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47244 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47206 * 119.99885 * 9 7 5 12 12 H 1.48506 * 109.46987 * 239.99853 * 9 7 5 13 13 C 1.53000 * 109.47090 * 120.00434 * 2 1 3 14 14 N 1.46893 * 109.47181 * 292.99078 * 13 2 1 15 15 C 1.48063 * 111.16217 * 61.40267 * 14 13 2 16 16 C 1.53990 * 107.14395 * 145.63231 * 15 14 13 17 17 C 1.54600 * 105.14023 * 358.91740 * 16 15 14 18 18 H 1.09002 * 110.72646 * 96.39979 * 17 16 15 19 19 C 1.53001 * 110.72352 * 219.68205 * 17 16 15 20 20 O 1.42899 * 109.47391 * 288.50293 * 19 17 16 21 21 C 1.48533 * 111.00359 * 178.79589 * 14 13 2 22 22 H 1.09004 * 109.46905 * 316.51547 * 1 2 3 23 23 H 1.08989 * 109.47336 * 76.51969 * 1 2 3 24 24 H 1.09004 * 109.47296 * 196.52366 * 1 2 3 25 25 H 1.09002 * 109.47053 * 179.97438 * 3 2 1 26 26 H 1.08992 * 109.47119 * 300.00273 * 3 2 1 27 27 H 1.09000 * 109.47017 * 60.00595 * 3 2 1 28 28 H 1.09006 * 109.47197 * 180.02562 * 4 2 1 29 29 H 1.09000 * 109.47280 * 300.00165 * 4 2 1 30 30 H 0.96999 * 119.99875 * 179.97438 * 8 7 5 31 31 H 1.09005 * 109.47129 * 172.99433 * 13 2 1 32 32 H 1.09000 * 109.47421 * 52.99738 * 13 2 1 33 33 H 1.08995 * 109.75904 * 26.31849 * 15 14 13 34 34 H 1.08997 * 110.15601 * 265.16849 * 15 14 13 35 35 H 1.08998 * 110.31222 * 240.00300 * 16 15 14 36 36 H 1.09009 * 110.31114 * 117.82857 * 16 15 14 37 37 H 1.09004 * 109.47069 * 48.50262 * 19 17 16 38 38 H 1.09004 * 109.46619 * 168.49934 * 19 17 16 39 39 H 0.96693 * 113.99832 * 180.02562 * 20 19 17 40 40 H 1.09001 * 110.66805 * 81.84002 * 21 14 13 41 41 H 1.08997 * 110.66557 * 318.88800 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4798 6 1 0.9170 0.8676 -2.3805 7 6 1.8710 -0.4814 -3.7320 8 7 2.6279 -1.5502 -3.8527 9 14 1.2489 0.3996 -5.2572 10 1 0.4233 1.5659 -4.8530 11 1 2.4042 0.8665 -6.0650 12 1 0.4241 -0.5335 -6.0661 13 6 2.0400 -0.7213 1.2492 14 7 1.6932 0.0617 2.4427 15 6 0.2260 0.2056 2.5798 16 6 -0.0917 0.2006 4.0866 17 6 1.2745 0.0181 4.7867 18 1 1.6837 0.9814 5.0912 19 6 1.1462 -0.9213 5.9875 20 8 0.4356 -0.2599 7.0361 21 6 2.1481 -0.6234 3.6796 22 1 -0.3633 0.7457 0.7072 23 1 -0.3633 0.2395 -0.9992 24 1 -0.3634 -0.9852 0.2923 25 1 3.1300 1.4424 0.0005 26 1 1.6767 1.9563 -0.8899 27 1 1.6768 1.9563 0.8900 28 1 3.1300 -0.7217 -1.2491 29 1 1.6766 -1.7489 -1.2494 30 1 2.8622 -1.8815 -4.7337 31 1 3.1228 -0.8312 1.1887 32 1 1.5780 -1.7065 1.3140 33 1 -0.2735 -0.6315 2.0923 34 1 -0.1026 1.1445 2.1342 35 1 -0.7556 -0.6287 4.3306 36 1 -0.5441 1.1477 4.3810 37 1 0.6033 -1.8187 5.6905 38 1 2.1399 -1.1979 6.3402 39 1 0.3171 -0.7975 7.8309 40 1 3.2048 -0.4275 3.8615 41 1 1.9625 -1.6956 3.6159 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092780724.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:32 Heat of formation + Delta-G solvation = -74.311762 kcal Electronic energy + Delta-G solvation = -18236.213120 eV Core-core repulsion = 15535.883894 eV Total energy + Delta-G solvation = -2700.329225 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.72479 -38.34423 -36.92949 -34.57888 -32.50997 -30.75676 -28.96261 -27.91644 -27.19011 -25.70154 -24.25767 -21.89147 -21.12475 -19.52103 -18.32294 -18.18196 -17.27596 -16.77901 -16.29404 -15.68566 -15.29370 -14.94367 -14.67000 -14.48403 -14.26403 -14.03506 -13.71817 -13.41108 -12.98943 -12.86403 -12.70506 -12.58126 -12.36585 -12.20615 -12.12994 -12.03916 -11.79093 -11.52088 -11.41936 -11.25015 -10.86618 -10.78616 -10.59628 -10.51194 -9.27629 -8.14458 -6.21163 1.39859 1.40895 1.53219 2.43485 2.98691 3.19490 3.35292 3.76346 3.84749 4.06575 4.14903 4.19974 4.32329 4.45602 4.51982 4.56274 4.58856 4.70539 4.73848 4.82144 4.85348 4.95565 4.99975 5.04513 5.10758 5.18012 5.22706 5.24836 5.38171 5.51916 5.53751 5.60499 5.64726 5.85850 5.92220 6.05531 6.14340 6.36810 6.93576 6.94095 7.45934 8.98212 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.060739 B = 0.004580 C = 0.004460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 460.878943 B = 6112.027702 C = 6275.827391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.054 4.054 3 C -0.104 4.104 4 C 0.041 3.959 5 C -0.513 4.513 6 H 0.065 0.935 7 C -0.004 4.004 8 N -0.938 5.938 9 Si 0.956 3.044 10 H -0.261 1.261 11 H -0.282 1.282 12 H -0.282 1.282 13 C 0.070 3.930 14 N -0.517 5.517 15 C 0.027 3.973 16 C -0.118 4.118 17 C -0.087 4.087 18 H 0.080 0.920 19 C 0.089 3.911 20 O -0.591 6.591 21 C 0.040 3.960 22 H 0.080 0.920 23 H 0.042 0.958 24 H 0.039 0.961 25 H 0.031 0.969 26 H 0.038 0.962 27 H 0.065 0.935 28 H -0.015 1.015 29 H -0.017 1.017 30 H 0.260 0.740 31 H 0.061 0.939 32 H 0.024 0.976 33 H 0.048 0.952 34 H 0.083 0.917 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.052 0.948 38 H 0.060 0.940 39 H 0.397 0.603 40 H 0.086 0.914 41 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.351 1.579 19.380 19.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.054 4.054 3 C -0.162 4.162 4 C 0.004 3.996 5 C -0.551 4.551 6 H 0.083 0.917 7 C -0.201 4.201 8 N -0.579 5.579 9 Si 0.782 3.218 10 H -0.185 1.185 11 H -0.208 1.208 12 H -0.208 1.208 13 C -0.058 4.058 14 N -0.241 5.241 15 C -0.101 4.101 16 C -0.156 4.156 17 C -0.106 4.106 18 H 0.099 0.901 19 C 0.011 3.989 20 O -0.399 6.399 21 C -0.087 4.087 22 H 0.098 0.902 23 H 0.061 0.939 24 H 0.058 0.942 25 H 0.050 0.950 26 H 0.057 0.943 27 H 0.084 0.916 28 H 0.003 0.997 29 H 0.002 0.998 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.042 0.958 33 H 0.066 0.934 34 H 0.101 0.899 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.071 0.929 38 H 0.078 0.922 39 H 0.247 0.753 40 H 0.105 0.895 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -4.037 2.459 18.752 19.338 hybrid contribution -0.235 -1.336 -0.908 1.632 sum -4.271 1.123 17.843 18.382 Atomic orbital electron populations 1.22356 0.94926 1.00678 1.01768 1.20461 0.95760 0.96145 0.93067 1.21484 0.99218 0.95200 1.00275 1.18991 0.94056 0.93964 0.92613 1.21634 1.30157 1.11854 0.91451 0.91671 1.25913 0.95701 0.95913 1.02548 1.70115 1.38843 1.24998 1.23982 0.85521 0.78146 0.78808 0.79344 1.18518 1.20782 1.20755 1.22183 0.99804 0.93706 0.90147 1.64734 1.12191 1.45696 1.01435 1.23441 0.88564 1.01668 0.96389 1.22459 0.97012 1.02658 0.93490 1.21985 0.95617 0.99668 0.93377 0.90131 1.22120 0.95947 0.93757 0.87123 1.86435 1.78879 1.46294 1.28298 1.23204 1.00115 0.96467 0.88961 0.90169 0.93889 0.94151 0.95003 0.94340 0.91620 0.99679 0.99844 0.93149 0.92059 0.95798 0.93366 0.89945 0.91083 0.90911 0.92938 0.92179 0.75325 0.89531 0.93450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.27 6.93 71.98 0.50 -4.77 16 2 C -0.05 -2.21 0.54 -52.18 -0.03 -2.24 16 3 C -0.10 -4.11 7.92 71.98 0.57 -3.54 16 4 C 0.04 2.18 4.04 29.85 0.12 2.30 16 5 C -0.51 -28.79 7.42 25.60 0.19 -28.60 16 6 H 0.07 3.53 5.81 -2.91 -0.02 3.51 16 7 C 0.00 -0.24 5.46 84.65 0.46 0.22 16 8 N -0.94 -57.79 13.29 21.45 0.28 -57.50 16 9 Si 0.96 44.88 29.54 68.60 2.03 46.91 16 10 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 11 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 12 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 13 C 0.07 2.47 4.02 86.30 0.35 2.82 16 14 N -0.52 -15.10 4.30 -882.62 -3.80 -18.89 16 15 C 0.03 0.70 4.52 86.41 0.39 1.09 16 16 C -0.12 -2.57 6.45 31.47 0.20 -2.37 16 17 C -0.09 -1.80 3.32 -9.59 -0.03 -1.83 16 18 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 19 C 0.09 1.41 6.39 71.98 0.46 1.87 16 20 O -0.59 -9.71 13.60 -148.98 -2.03 -11.73 16 21 C 0.04 0.94 6.00 86.65 0.52 1.46 16 22 H 0.08 2.54 4.56 -2.38 -0.01 2.53 16 23 H 0.04 1.80 6.26 -2.39 -0.01 1.78 16 24 H 0.04 1.45 6.95 -2.38 -0.02 1.43 16 25 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.04 1.60 6.62 -2.39 -0.02 1.59 16 27 H 0.06 2.27 7.00 -2.39 -0.02 2.25 16 28 H -0.02 -0.88 8.14 -2.38 -0.02 -0.90 16 29 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 30 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 31 H 0.06 2.26 8.14 -2.38 -0.02 2.24 16 32 H 0.02 0.85 7.87 -2.39 -0.02 0.84 16 33 H 0.05 1.35 5.58 -2.39 -0.01 1.33 16 34 H 0.08 2.23 5.95 -2.39 -0.01 2.22 16 35 H 0.07 1.44 7.72 -2.39 -0.02 1.42 16 36 H 0.07 1.55 8.14 -2.38 -0.02 1.54 16 37 H 0.05 0.76 7.95 -2.39 -0.02 0.75 16 38 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 39 H 0.40 2.71 9.12 -74.06 -0.68 2.04 16 40 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.05 1.07 7.89 -2.39 -0.02 1.05 16 Total: -1.00 -66.17 307.76 0.51 -65.66 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: 0.33 Total: 9.15 kcal Atomic # 6 Polarization: -37.29 SS G_CDS: 3.70 Total: -33.59 kcal Atomic # 7 Polarization: -72.88 SS G_CDS: -3.51 Total: -76.39 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: -2.03 Total: -11.73 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -66.17 0.51 -65.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092780724.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.656 kcal (2) G-P(sol) polarization free energy of solvation -66.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds