Wall clock time and date at job start Sun Mar 29 2020 22:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47098 * 2 1 4 4 C 1.53006 * 109.47370 * 119.99786 * 2 1 3 5 5 C 1.52999 * 109.46997 * 175.00241 * 4 2 1 6 6 O 1.42905 * 109.46728 * 180.02562 * 5 4 2 7 7 C 1.42899 * 113.99778 * 179.97438 * 6 5 4 8 8 H 1.08996 * 110.27850 * 27.90799 * 7 6 5 9 9 C 1.54594 * 110.30948 * 265.71213 * 7 6 5 10 10 C 1.54932 * 102.92580 * 219.12894 * 9 7 6 11 11 N 1.48537 * 103.22779 * 37.41208 * 10 9 7 12 12 C 1.46888 * 111.00270 * 200.28081 * 11 10 9 13 13 C 1.50699 * 109.47352 * 287.39714 * 12 11 10 14 14 H 1.08007 * 119.99829 * 359.97438 * 13 12 11 15 15 C 1.37881 * 120.00356 * 179.97438 * 13 12 11 16 16 N 1.31520 * 119.99663 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00098 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47325 * 89.99956 * 17 15 13 19 19 H 1.48500 * 109.46834 * 210.00037 * 17 15 13 20 20 H 1.48500 * 109.46815 * 329.99814 * 17 15 13 21 21 C 1.47902 * 105.82068 * 320.79744 * 11 10 9 22 22 H 1.09000 * 109.46998 * 300.00170 * 1 2 3 23 23 H 1.09002 * 109.47083 * 60.00155 * 1 2 3 24 24 H 1.08994 * 109.46630 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47608 * 240.00265 * 2 1 3 26 26 H 1.08996 * 109.46933 * 180.02562 * 3 2 1 27 27 H 1.09002 * 109.47028 * 299.99879 * 3 2 1 28 28 H 1.09000 * 109.47335 * 60.00037 * 3 2 1 29 29 H 1.09000 * 109.46866 * 55.00029 * 4 2 1 30 30 H 1.09001 * 109.46611 * 295.00146 * 4 2 1 31 31 H 1.09000 * 109.47486 * 60.00167 * 5 4 2 32 32 H 1.09001 * 109.47362 * 299.99445 * 5 4 2 33 33 H 1.09003 * 110.72073 * 337.48935 * 9 7 6 34 34 H 1.09000 * 110.72715 * 100.76615 * 9 7 6 35 35 H 1.09006 * 110.66630 * 278.98296 * 10 9 7 36 36 H 1.09002 * 110.67013 * 155.85015 * 10 9 7 37 37 H 1.09004 * 109.47179 * 47.39736 * 12 11 10 38 38 H 1.09004 * 109.47162 * 167.39604 * 12 11 10 39 39 H 0.97000 * 119.99796 * 180.02562 * 16 15 13 40 40 H 1.09000 * 109.91698 * 265.98021 * 21 11 10 41 41 H 1.08998 * 110.08621 * 144.76743 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5649 -0.8309 1.1880 6 8 4.0412 -1.5051 2.3545 7 6 5.4610 -1.6613 2.3965 8 1 5.9459 -0.8603 1.8385 9 6 5.8664 -3.0388 1.8236 10 6 7.0168 -3.4798 2.7629 11 7 6.5740 -2.9930 4.0945 12 6 7.7100 -2.8824 5.0191 13 6 8.1587 -4.2608 5.4308 14 1 7.6504 -5.1320 5.0445 15 6 9.2181 -4.4099 6.3006 16 7 9.8373 -3.3491 6.7707 17 14 9.7747 -6.1187 6.8104 18 1 10.8074 -6.6065 5.8613 19 1 10.3467 -6.0649 8.1797 20 1 8.6124 -7.0429 6.7953 21 6 5.9547 -1.6713 3.8552 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3632 -1.0276 0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9564 -0.8900 28 1 1.6767 1.9564 0.8900 29 1 1.6055 -1.7198 1.2952 30 1 1.7517 -0.1582 2.1370 31 1 3.9995 0.1676 1.1420 32 1 3.8533 -1.3939 0.3003 33 1 5.0334 -3.7396 1.8785 34 1 6.2220 -2.9405 0.7979 35 1 7.9542 -3.0054 2.4722 36 1 7.1179 -4.5651 2.7642 37 1 8.5322 -2.3653 4.5244 38 1 7.4062 -2.3203 5.9023 39 1 10.5828 -3.4540 7.3823 40 1 6.6931 -0.8832 4.0026 41 1 5.1138 -1.5237 4.5327 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096459536.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:11 Heat of formation + Delta-G solvation = -65.459331 kcal Electronic energy + Delta-G solvation = -17385.316667 eV Core-core repulsion = 14685.371311 eV Total energy + Delta-G solvation = -2699.945355 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.94346 -37.29713 -35.79438 -32.86422 -30.61873 -29.41690 -27.84658 -27.42253 -25.98435 -23.18522 -22.50215 -20.59096 -20.22032 -19.87752 -16.85296 -16.25149 -15.93662 -15.32874 -14.86506 -14.44069 -14.28978 -13.89024 -13.56385 -13.16456 -13.02361 -12.55841 -12.38733 -12.28912 -11.83836 -11.79171 -11.49568 -11.26632 -11.18983 -10.97481 -10.86400 -10.79633 -10.62346 -10.61035 -10.34286 -10.28157 -9.79525 -9.36053 -9.09469 -8.41059 -7.30873 -6.00504 -4.01551 3.33824 3.39738 3.45043 3.73946 4.45250 4.63085 4.67432 4.78223 4.90423 5.03353 5.18991 5.26429 5.30494 5.35204 5.36070 5.39571 5.44279 5.51397 5.57505 5.66556 5.74547 5.83123 5.85442 5.94838 6.05386 6.10910 6.15232 6.17990 6.23272 6.42024 6.61801 6.63232 7.18331 7.30204 7.49457 7.82010 8.03698 8.19512 8.54049 9.06393 9.62625 11.10676 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.064518 B = 0.003575 C = 0.003525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 433.883308 B = 7829.353647 C = 7941.399678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.095 4.095 3 C -0.152 4.152 4 C -0.114 4.114 5 C 0.060 3.940 6 O -0.375 6.375 7 C 0.082 3.918 8 H 0.059 0.941 9 C -0.146 4.146 10 C 0.050 3.950 11 N -0.511 5.511 12 C 0.183 3.817 13 C -0.504 4.504 14 H 0.063 0.937 15 C 0.054 3.946 16 N -0.900 5.900 17 Si 0.899 3.101 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.272 1.272 21 C 0.038 3.962 22 H 0.055 0.945 23 H 0.054 0.946 24 H 0.055 0.945 25 H 0.070 0.930 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.047 0.953 32 H 0.043 0.957 33 H 0.080 0.920 34 H 0.061 0.939 35 H 0.037 0.963 36 H 0.080 0.920 37 H -0.006 1.006 38 H 0.030 0.970 39 H 0.261 0.739 40 H 0.043 0.957 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.833 7.519 -14.332 21.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.114 4.114 3 C -0.209 4.209 4 C -0.152 4.152 5 C -0.017 4.017 6 O -0.294 6.294 7 C 0.024 3.976 8 H 0.077 0.923 9 C -0.184 4.184 10 C -0.078 4.078 11 N -0.237 5.237 12 C 0.058 3.942 13 C -0.543 4.543 14 H 0.081 0.919 15 C -0.147 4.147 16 N -0.540 5.540 17 Si 0.727 3.273 18 H -0.208 1.208 19 H -0.213 1.213 20 H -0.197 1.197 21 C -0.091 4.091 22 H 0.074 0.926 23 H 0.073 0.927 24 H 0.074 0.926 25 H 0.088 0.912 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.099 0.901 34 H 0.080 0.920 35 H 0.055 0.945 36 H 0.099 0.901 37 H 0.012 0.988 38 H 0.048 0.952 39 H 0.071 0.929 40 H 0.061 0.939 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -14.173 7.153 -13.802 21.037 hybrid contribution 1.272 -0.150 -0.194 1.295 sum -12.901 7.003 -13.996 20.282 Atomic orbital electron populations 1.21823 0.94927 1.01863 1.01748 1.21059 0.95936 0.96321 0.98040 1.21929 1.01240 0.95940 1.01775 1.21578 0.93927 1.01452 0.98199 1.22559 0.94913 0.95702 0.88536 1.87974 1.21641 1.78253 1.41566 1.23036 0.80738 0.96435 0.97427 0.92296 1.23054 0.99930 0.97262 0.98199 1.22986 0.94560 1.01311 0.88921 1.64868 1.30531 1.19660 1.08599 1.19913 0.85675 0.97742 0.90881 1.21141 1.14176 0.92398 1.26590 0.91861 1.25004 0.96483 0.97044 0.96202 1.69965 1.22586 1.28660 1.32822 0.86478 0.78799 0.84329 0.77719 1.20766 1.21258 1.19720 1.22879 0.99059 0.93039 0.94114 0.92562 0.92721 0.92572 0.91178 0.92470 0.92803 0.92488 0.91097 0.91097 0.93535 0.93825 0.90138 0.91991 0.94470 0.90133 0.98848 0.95154 0.92950 0.93868 0.90080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.19 37.16 0.34 -0.71 16 2 C -0.09 -0.77 2.92 -90.61 -0.26 -1.03 16 3 C -0.15 -1.15 8.95 37.16 0.33 -0.82 16 4 C -0.11 -1.16 5.05 -26.73 -0.14 -1.29 16 5 C 0.06 0.70 5.53 37.16 0.21 0.91 16 6 O -0.38 -5.89 9.93 -35.23 -0.35 -6.24 16 7 C 0.08 1.33 3.48 -25.37 -0.09 1.24 16 8 H 0.06 0.85 7.81 -51.93 -0.41 0.44 16 9 C -0.15 -2.36 6.80 -24.87 -0.17 -2.53 16 10 C 0.05 1.00 6.12 -1.90 -0.01 0.99 16 11 N -0.51 -11.71 5.23 -231.89 -1.21 -12.92 16 12 C 0.18 4.94 4.47 -4.98 -0.02 4.92 16 13 C -0.50 -14.58 8.91 -34.44 -0.31 -14.89 16 14 H 0.06 1.82 7.81 -52.48 -0.41 1.41 16 15 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 16 N -0.90 -27.20 13.29 55.43 0.74 -26.47 16 17 Si 0.90 22.00 29.54 -169.99 -5.02 16.98 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 21 C 0.04 0.73 6.48 -2.75 -0.02 0.71 16 22 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 23 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 24 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.45 6.57 -51.93 -0.34 0.11 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.05 0.51 6.53 -51.93 -0.34 0.17 16 32 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.08 1.33 8.08 -51.93 -0.42 0.91 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.04 0.75 7.81 -51.93 -0.41 0.34 16 36 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 37 H -0.01 -0.18 7.83 -51.93 -0.41 -0.58 16 38 H 0.03 0.87 8.08 -51.93 -0.42 0.45 16 39 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 40 H 0.04 0.83 7.77 -51.93 -0.40 0.43 16 41 H 0.08 1.59 7.96 -51.93 -0.41 1.18 16 LS Contribution 326.80 15.07 4.92 4.92 Total: -1.00 -30.69 326.80 -8.91 -39.60 By element: Atomic # 1 Polarization: 2.92 SS G_CDS: -7.75 Total: -4.83 kcal Atomic # 6 Polarization: -10.81 SS G_CDS: -0.23 Total: -11.04 kcal Atomic # 7 Polarization: -38.91 SS G_CDS: -0.48 Total: -39.39 kcal Atomic # 8 Polarization: -5.89 SS G_CDS: -0.35 Total: -6.24 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.69 -8.91 -39.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096459536.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.861 kcal (2) G-P(sol) polarization free energy of solvation -30.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds