Wall clock time and date at job start Sun Mar 29 2020 22:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47098 * 2 1 4 4 C 1.53006 * 109.47370 * 119.99786 * 2 1 3 5 5 C 1.52999 * 109.46997 * 175.00241 * 4 2 1 6 6 O 1.42905 * 109.46728 * 180.02562 * 5 4 2 7 7 C 1.42899 * 113.99778 * 179.97438 * 6 5 4 8 8 H 1.08996 * 110.27850 * 27.90799 * 7 6 5 9 9 C 1.54594 * 110.30948 * 265.71213 * 7 6 5 10 10 C 1.54932 * 102.92580 * 219.12894 * 9 7 6 11 11 N 1.48537 * 103.22779 * 37.41208 * 10 9 7 12 12 C 1.46888 * 111.00270 * 200.28081 * 11 10 9 13 13 C 1.50699 * 109.47352 * 287.39714 * 12 11 10 14 14 H 1.08007 * 119.99829 * 359.97438 * 13 12 11 15 15 C 1.37881 * 120.00356 * 179.97438 * 13 12 11 16 16 N 1.31520 * 119.99663 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00098 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47325 * 89.99956 * 17 15 13 19 19 H 1.48500 * 109.46834 * 210.00037 * 17 15 13 20 20 H 1.48500 * 109.46815 * 329.99814 * 17 15 13 21 21 C 1.47902 * 105.82068 * 320.79744 * 11 10 9 22 22 H 1.09000 * 109.46998 * 300.00170 * 1 2 3 23 23 H 1.09002 * 109.47083 * 60.00155 * 1 2 3 24 24 H 1.08994 * 109.46630 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47608 * 240.00265 * 2 1 3 26 26 H 1.08996 * 109.46933 * 180.02562 * 3 2 1 27 27 H 1.09002 * 109.47028 * 299.99879 * 3 2 1 28 28 H 1.09000 * 109.47335 * 60.00037 * 3 2 1 29 29 H 1.09000 * 109.46866 * 55.00029 * 4 2 1 30 30 H 1.09001 * 109.46611 * 295.00146 * 4 2 1 31 31 H 1.09000 * 109.47486 * 60.00167 * 5 4 2 32 32 H 1.09001 * 109.47362 * 299.99445 * 5 4 2 33 33 H 1.09003 * 110.72073 * 337.48935 * 9 7 6 34 34 H 1.09000 * 110.72715 * 100.76615 * 9 7 6 35 35 H 1.09006 * 110.66630 * 278.98296 * 10 9 7 36 36 H 1.09002 * 110.67013 * 155.85015 * 10 9 7 37 37 H 1.09004 * 109.47179 * 47.39736 * 12 11 10 38 38 H 1.09004 * 109.47162 * 167.39604 * 12 11 10 39 39 H 0.97000 * 119.99796 * 180.02562 * 16 15 13 40 40 H 1.09000 * 109.91698 * 265.98021 * 21 11 10 41 41 H 1.08998 * 110.08621 * 144.76743 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5649 -0.8309 1.1880 6 8 4.0412 -1.5051 2.3545 7 6 5.4610 -1.6613 2.3965 8 1 5.9459 -0.8603 1.8385 9 6 5.8664 -3.0388 1.8236 10 6 7.0168 -3.4798 2.7629 11 7 6.5740 -2.9930 4.0945 12 6 7.7100 -2.8824 5.0191 13 6 8.1587 -4.2608 5.4308 14 1 7.6504 -5.1320 5.0445 15 6 9.2181 -4.4099 6.3006 16 7 9.8373 -3.3491 6.7707 17 14 9.7747 -6.1187 6.8104 18 1 10.8074 -6.6065 5.8613 19 1 10.3467 -6.0649 8.1797 20 1 8.6124 -7.0429 6.7953 21 6 5.9547 -1.6713 3.8552 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3632 -1.0276 0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9564 -0.8900 28 1 1.6767 1.9564 0.8900 29 1 1.6055 -1.7198 1.2952 30 1 1.7517 -0.1582 2.1370 31 1 3.9995 0.1676 1.1420 32 1 3.8533 -1.3939 0.3003 33 1 5.0334 -3.7396 1.8785 34 1 6.2220 -2.9405 0.7979 35 1 7.9542 -3.0054 2.4722 36 1 7.1179 -4.5651 2.7642 37 1 8.5322 -2.3653 4.5244 38 1 7.4062 -2.3203 5.9023 39 1 10.5828 -3.4540 7.3823 40 1 6.6931 -0.8832 4.0026 41 1 5.1138 -1.5237 4.5327 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096459536.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:10 Heat of formation + Delta-G solvation = -84.886564 kcal Electronic energy + Delta-G solvation = -17386.159095 eV Core-core repulsion = 14685.371311 eV Total energy + Delta-G solvation = -2700.787783 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.30578 -38.43353 -36.84904 -34.96626 -32.25563 -30.48401 -29.36906 -28.03013 -27.84699 -24.49341 -24.01970 -21.97532 -21.75506 -20.76334 -18.59468 -17.89092 -17.16750 -16.69475 -16.18144 -15.73361 -15.56463 -15.20211 -14.85103 -14.58579 -14.25083 -13.93526 -13.70938 -13.42807 -13.10659 -12.95584 -12.80700 -12.71311 -12.51172 -12.42856 -12.25156 -12.23704 -11.87163 -11.64977 -11.59494 -11.47560 -11.44261 -11.30709 -10.63348 -10.42014 -9.15502 -8.22851 -6.33522 1.40149 1.42241 1.54260 2.39255 2.65623 3.09451 3.32673 3.68994 3.79415 3.95472 3.98739 4.07707 4.14867 4.33707 4.37536 4.49728 4.52997 4.61348 4.68848 4.79868 4.82725 4.85175 4.88423 4.97028 4.97910 5.03552 5.05285 5.13567 5.14391 5.16614 5.26355 5.33500 5.46705 5.51679 5.62194 5.98817 6.22982 6.35581 6.50130 6.81763 7.36484 8.88693 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.064518 B = 0.003575 C = 0.003525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 433.883308 B = 7829.353647 C = 7941.399678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.091 4.091 3 C -0.152 4.152 4 C -0.111 4.111 5 C 0.054 3.946 6 O -0.395 6.395 7 C 0.092 3.908 8 H 0.084 0.916 9 C -0.131 4.131 10 C 0.047 3.953 11 N -0.529 5.529 12 C 0.200 3.800 13 C -0.526 4.526 14 H 0.061 0.939 15 C 0.001 3.999 16 N -0.935 5.935 17 Si 0.973 3.027 18 H -0.270 1.270 19 H -0.280 1.280 20 H -0.266 1.266 21 C 0.033 3.967 22 H 0.053 0.947 23 H 0.065 0.935 24 H 0.055 0.945 25 H 0.076 0.924 26 H 0.054 0.946 27 H 0.064 0.936 28 H 0.053 0.947 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.078 0.922 34 H 0.097 0.903 35 H 0.032 0.968 36 H 0.071 0.929 37 H -0.030 1.030 38 H 0.000 1.000 39 H 0.266 0.734 40 H 0.040 0.960 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.453 7.054 -16.012 22.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.109 4.109 3 C -0.209 4.209 4 C -0.149 4.149 5 C -0.022 4.022 6 O -0.314 6.314 7 C 0.034 3.966 8 H 0.102 0.898 9 C -0.169 4.169 10 C -0.081 4.081 11 N -0.254 5.254 12 C 0.073 3.927 13 C -0.564 4.564 14 H 0.079 0.921 15 C -0.197 4.197 16 N -0.576 5.576 17 Si 0.797 3.203 18 H -0.195 1.195 19 H -0.206 1.206 20 H -0.190 1.190 21 C -0.095 4.095 22 H 0.072 0.928 23 H 0.084 0.916 24 H 0.074 0.926 25 H 0.095 0.905 26 H 0.073 0.927 27 H 0.083 0.917 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.097 0.903 34 H 0.116 0.884 35 H 0.051 0.949 36 H 0.090 0.910 37 H -0.012 1.012 38 H 0.018 0.982 39 H 0.074 0.926 40 H 0.058 0.942 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -14.815 6.697 -15.504 22.466 hybrid contribution 1.410 0.056 0.319 1.447 sum -13.405 6.753 -15.184 21.351 Atomic orbital electron populations 1.21822 0.94267 1.02031 1.02210 1.21040 0.96465 0.96368 0.97061 1.21934 1.01113 0.95663 1.02198 1.21581 0.92962 1.01301 0.99031 1.22808 0.95745 0.96087 0.87553 1.87951 1.20964 1.78894 1.43622 1.22854 0.81561 0.97357 0.94871 0.89802 1.22979 0.98095 0.96846 0.98982 1.23027 0.96088 1.00697 0.88316 1.64730 1.28813 1.21936 1.09916 1.19549 0.86197 0.96369 0.90550 1.21430 1.14764 0.92993 1.27211 0.92120 1.25960 0.96333 1.01547 0.95894 1.70088 1.23050 1.31143 1.33273 0.85327 0.78547 0.78838 0.77580 1.19508 1.20554 1.19021 1.22903 0.98507 0.91226 0.96878 0.92787 0.91604 0.92584 0.90523 0.92655 0.91676 0.92831 0.91717 0.91944 0.92458 0.92517 0.90337 0.88413 0.94938 0.91040 1.01228 0.98176 0.92563 0.94197 0.90908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.19 71.98 0.66 -1.16 16 2 C -0.09 -1.27 2.92 -10.79 -0.03 -1.31 16 3 C -0.15 -1.99 8.95 71.98 0.64 -1.35 16 4 C -0.11 -2.08 5.05 30.60 0.15 -1.92 16 5 C 0.05 1.15 5.53 71.98 0.40 1.55 16 6 O -0.39 -11.74 9.93 -148.98 -1.48 -13.22 16 7 C 0.09 2.82 3.48 31.47 0.11 2.93 16 8 H 0.08 2.18 7.81 -2.39 -0.02 2.16 16 9 C -0.13 -3.94 6.80 31.80 0.22 -3.72 16 10 C 0.05 1.84 6.12 86.65 0.53 2.37 16 11 N -0.53 -24.71 5.23 -887.57 -4.64 -29.36 16 12 C 0.20 11.21 4.47 85.56 0.38 11.59 16 13 C -0.53 -31.04 8.91 25.60 0.23 -30.81 16 14 H 0.06 3.53 7.81 -2.91 -0.02 3.51 16 15 C 0.00 0.03 5.46 84.65 0.46 0.50 16 16 N -0.94 -57.45 13.29 21.45 0.28 -57.16 16 17 Si 0.97 45.18 29.54 68.60 2.03 47.21 16 18 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 19 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 20 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 21 C 0.03 1.30 6.48 86.45 0.56 1.86 16 22 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 23 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 24 H 0.06 0.69 8.14 -2.39 -0.02 0.68 16 25 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.05 0.74 6.57 -2.39 -0.02 0.72 16 27 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.06 1.10 6.53 -2.39 -0.02 1.09 16 32 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.08 2.42 8.08 -2.39 -0.02 2.40 16 34 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 35 H 0.03 1.31 7.81 -2.38 -0.02 1.29 16 36 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16 37 H -0.03 -1.78 7.83 -2.38 -0.02 -1.79 16 38 H 0.00 0.01 8.08 -2.38 -0.02 -0.01 16 39 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 40 H 0.04 1.57 7.77 -2.39 -0.02 1.55 16 41 H 0.07 2.93 7.96 -2.39 -0.02 2.91 16 Total: -1.00 -66.53 326.80 1.45 -65.07 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: 0.95 Total: 6.93 kcal Atomic # 6 Polarization: -23.78 SS G_CDS: 4.32 Total: -19.46 kcal Atomic # 7 Polarization: -82.16 SS G_CDS: -4.36 Total: -86.52 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: -1.48 Total: -13.22 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -66.53 1.45 -65.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096459536.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.813 kcal (2) G-P(sol) polarization free energy of solvation -66.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds