Wall clock time and date at job start Sun Mar 29 2020 23:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.47036 * 2 1 4 4 H 1.09002 * 109.47012 * 53.16683 * 3 2 1 5 5 C 1.50703 * 109.47036 * 293.16828 * 3 2 1 6 6 H 1.08005 * 119.99692 * 275.24884 * 5 3 2 7 7 C 1.37872 * 120.00231 * 95.25021 * 5 3 2 8 8 N 1.31517 * 119.99861 * 5.40390 * 7 5 3 9 9 Si 1.86801 * 119.99983 * 185.40354 * 7 5 3 10 10 H 1.48494 * 109.47240 * 90.00245 * 9 7 5 11 11 H 1.48509 * 109.46989 * 210.00048 * 9 7 5 12 12 H 1.48497 * 109.47316 * 329.99998 * 9 7 5 13 13 N 1.46897 * 109.47358 * 173.16647 * 3 2 1 14 14 C 1.46903 * 110.99810 * 50.25075 * 13 3 2 15 15 C 1.46904 * 110.99751 * 286.30273 * 13 3 2 16 16 C 1.52995 * 109.47131 * 288.03123 * 15 13 3 17 17 C 1.53176 * 109.54613 * 294.82446 * 16 15 13 18 18 C 1.53090 * 109.16215 * 183.15020 * 17 16 15 19 19 O 1.42905 * 109.41465 * 57.61253 * 18 17 16 20 20 C 1.42904 * 114.09530 * 298.83757 * 19 18 17 21 21 C 1.53089 * 109.41380 * 61.15827 * 20 19 18 22 22 H 1.09001 * 109.46976 * 182.45318 * 1 2 3 23 23 H 1.08996 * 109.47170 * 302.45569 * 1 2 3 24 24 H 1.09002 * 109.46739 * 62.45939 * 1 2 3 25 25 H 1.08999 * 109.47447 * 239.99886 * 2 1 3 26 26 H 1.09000 * 109.46975 * 119.99445 * 2 1 3 27 27 H 0.96998 * 119.99551 * 179.97438 * 8 7 5 28 28 H 1.09001 * 109.46632 * 54.00001 * 14 13 3 29 29 H 1.08998 * 109.47501 * 294.00096 * 14 13 3 30 30 H 1.08999 * 109.47172 * 173.99342 * 14 13 3 31 31 H 1.09002 * 109.47376 * 48.04102 * 15 13 3 32 32 H 1.09004 * 109.46740 * 168.03426 * 15 13 3 33 33 H 1.09005 * 109.54007 * 55.09238 * 16 15 13 34 34 H 1.08991 * 109.52410 * 303.05786 * 17 16 15 35 35 H 1.08999 * 109.52265 * 63.24835 * 17 16 15 36 36 H 1.09002 * 109.48474 * 297.62748 * 18 17 16 37 37 H 1.09002 * 109.48030 * 177.59086 * 18 17 16 38 38 H 1.09005 * 109.48145 * 301.17792 * 20 19 18 39 39 H 1.09002 * 109.49040 * 181.14984 * 20 19 18 40 40 H 1.09001 * 109.52372 * 182.47977 * 21 20 19 41 41 H 1.09005 * 109.52411 * 62.30025 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5803 1.9904 0.8225 5 6 1.6804 2.1025 -1.3063 6 1 2.3215 1.9812 -2.1670 7 6 0.5332 2.8610 -1.4026 8 7 -0.1910 3.0970 -0.3304 9 14 0.0075 3.5537 -3.0559 10 1 -0.8771 2.5785 -3.7424 11 1 -0.7271 4.8275 -2.8479 12 1 1.2089 3.8059 -3.8915 13 7 3.4997 1.4459 0.1648 14 6 4.1392 0.5290 -0.7883 15 6 3.8743 1.1146 1.5461 16 6 3.5325 2.2906 2.4632 17 6 4.3983 3.4984 2.0921 18 6 4.1058 4.6441 3.0645 19 8 4.3571 4.2078 4.4019 20 6 3.5425 3.1108 4.8205 21 6 3.8123 1.9035 3.9186 22 1 -0.3633 -1.0267 0.0440 23 1 -0.3633 0.5515 0.8671 24 1 -0.3633 0.4752 -0.9112 25 1 1.8935 -0.5138 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 -0.9980 3.6310 -0.3982 28 1 3.8163 0.7738 -1.8003 29 1 3.8534 -0.4964 -0.5538 30 1 5.2223 0.6295 -0.7183 31 1 3.3254 0.2301 1.8693 32 1 4.9449 0.9155 1.5944 33 1 2.4790 2.5469 2.3501 34 1 5.4515 3.2254 2.1571 35 1 4.1653 3.8151 1.0755 36 1 3.0621 4.9437 2.9699 37 1 4.7502 5.4919 2.8316 38 1 2.4914 3.3904 4.7488 39 1 3.7807 2.8540 5.8527 40 1 3.1602 1.0795 4.2083 41 1 4.8537 1.5982 4.0206 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104351159.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:04 Heat of formation + Delta-G solvation = -60.361536 kcal Electronic energy + Delta-G solvation = -18880.395514 eV Core-core repulsion = 16180.671215 eV Total energy + Delta-G solvation = -2699.724298 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.14736 -37.31733 -33.98975 -32.41854 -30.91037 -30.66431 -27.34017 -26.57771 -24.24236 -23.21446 -22.77932 -21.53841 -19.78492 -18.55011 -16.39601 -15.77122 -15.67282 -14.91831 -14.57403 -14.31771 -14.17207 -13.75616 -13.34077 -12.98892 -12.81808 -12.32307 -12.01874 -11.76772 -11.42897 -11.30467 -10.96519 -10.92498 -10.86503 -10.69175 -10.55224 -10.30064 -10.25121 -10.03106 -9.88996 -9.76559 -9.25412 -9.12874 -8.86542 -8.39091 -7.03449 -6.00630 -4.00543 3.30239 3.37897 3.41265 4.17853 4.42728 4.87348 5.18844 5.25100 5.29541 5.44652 5.48949 5.66322 5.76073 5.86469 5.93786 6.06345 6.11141 6.14950 6.20897 6.28354 6.30930 6.36724 6.37740 6.43277 6.58135 6.61974 6.72630 6.83660 6.92577 6.94405 7.17049 7.28996 7.50586 7.53363 7.59013 7.87321 8.14344 8.43280 8.65753 9.06368 9.61365 11.07802 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.022727 B = 0.007747 C = 0.006980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.714096 B = 3613.567413 C = 4010.510603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.139 4.139 3 C 0.198 3.802 4 H 0.074 0.926 5 C -0.491 4.491 6 H 0.055 0.945 7 C 0.068 3.932 8 N -0.890 5.890 9 Si 0.887 3.113 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.275 1.275 13 N -0.531 5.531 14 C 0.034 3.966 15 C 0.060 3.940 16 C -0.083 4.083 17 C -0.134 4.134 18 C 0.058 3.942 19 O -0.392 6.392 20 C 0.064 3.936 21 C -0.150 4.150 22 H 0.013 0.987 23 H 0.049 0.951 24 H 0.064 0.936 25 H 0.041 0.959 26 H 0.020 0.980 27 H 0.259 0.741 28 H 0.069 0.931 29 H 0.011 0.989 30 H 0.041 0.959 31 H 0.024 0.976 32 H 0.053 0.947 33 H 0.082 0.918 34 H 0.057 0.943 35 H 0.091 0.909 36 H 0.051 0.949 37 H 0.087 0.913 38 H 0.049 0.951 39 H 0.085 0.915 40 H 0.067 0.933 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.014 -1.983 6.334 8.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.179 4.179 3 C 0.092 3.908 4 H 0.092 0.908 5 C -0.530 4.530 6 H 0.073 0.927 7 C -0.134 4.134 8 N -0.529 5.529 9 Si 0.715 3.285 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.200 1.200 13 N -0.253 5.253 14 C -0.115 4.115 15 C -0.068 4.068 16 C -0.102 4.102 17 C -0.172 4.172 18 C -0.018 4.018 19 O -0.311 6.311 20 C -0.013 4.013 21 C -0.188 4.188 22 H 0.033 0.967 23 H 0.068 0.932 24 H 0.083 0.917 25 H 0.060 0.940 26 H 0.038 0.962 27 H 0.069 0.931 28 H 0.088 0.912 29 H 0.029 0.971 30 H 0.060 0.940 31 H 0.042 0.958 32 H 0.071 0.929 33 H 0.100 0.900 34 H 0.076 0.924 35 H 0.110 0.890 36 H 0.069 0.931 37 H 0.105 0.895 38 H 0.067 0.933 39 H 0.104 0.896 40 H 0.085 0.915 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.165 -1.311 6.402 8.984 hybrid contribution -0.909 -0.699 -0.965 1.499 sum 5.256 -2.010 5.436 7.824 Atomic orbital electron populations 1.21419 0.95944 0.97093 1.03230 1.22219 0.96795 1.01380 0.97499 1.19674 0.81077 0.90666 0.99351 0.90817 1.20958 1.06417 1.30045 0.95607 0.92721 1.24866 0.96919 0.95508 0.96114 1.69920 1.16027 1.39499 1.27417 0.86682 0.78692 0.78421 0.84701 1.20860 1.21366 1.19974 1.62542 1.12541 1.49174 1.01080 1.22209 0.97218 0.93688 0.98362 1.22041 0.98648 0.95288 0.90862 1.21159 1.01163 0.95570 0.92291 1.22036 0.99293 0.95102 1.00768 1.22662 1.00673 0.96815 0.81670 1.87842 1.62490 1.50248 1.30531 1.22502 0.94596 0.86565 0.97673 1.22221 1.01967 0.98248 0.96367 0.96747 0.93234 0.91729 0.94036 0.96173 0.93073 0.91177 0.97062 0.94028 0.95755 0.92885 0.90017 0.92416 0.89028 0.93082 0.89522 0.93274 0.89649 0.91457 0.91674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.65 9.04 37.16 0.34 -2.32 16 2 C -0.14 -3.08 4.40 -26.73 -0.12 -3.19 16 3 C 0.20 4.70 1.81 -68.86 -0.12 4.57 16 4 H 0.07 1.95 5.35 -51.93 -0.28 1.67 16 5 C -0.49 -12.88 7.64 -34.44 -0.26 -13.15 16 6 H 0.05 1.46 6.55 -52.48 -0.34 1.11 16 7 C 0.07 1.80 4.34 -17.82 -0.08 1.72 16 8 N -0.89 -24.28 12.12 55.43 0.67 -23.61 16 9 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 13 N -0.53 -11.09 4.16 -236.28 -0.98 -12.07 16 14 C 0.03 0.65 8.52 60.07 0.51 1.16 16 15 C 0.06 1.09 4.28 -3.82 -0.02 1.07 16 16 C -0.08 -1.43 2.29 -90.44 -0.21 -1.64 16 17 C -0.13 -2.25 5.27 -26.59 -0.14 -2.39 16 18 C 0.06 0.90 6.84 37.20 0.25 1.16 16 19 O -0.39 -6.20 10.77 -35.23 -0.38 -6.58 16 20 C 0.06 0.88 6.84 37.20 0.25 1.14 16 21 C -0.15 -2.15 5.42 -26.59 -0.14 -2.30 16 22 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 23 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 24 H 0.06 1.58 6.67 -51.93 -0.35 1.23 16 25 H 0.04 0.91 6.88 -51.93 -0.36 0.55 16 26 H 0.02 0.41 6.49 -51.93 -0.34 0.08 16 27 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 28 H 0.07 1.42 6.53 -51.93 -0.34 1.08 16 29 H 0.01 0.20 6.73 -51.93 -0.35 -0.15 16 30 H 0.04 0.70 8.12 -51.93 -0.42 0.28 16 31 H 0.02 0.45 6.38 -51.93 -0.33 0.12 16 32 H 0.05 0.89 7.98 -51.93 -0.41 0.47 16 33 H 0.08 1.66 6.43 -51.93 -0.33 1.33 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.09 1.74 7.86 -51.93 -0.41 1.33 16 36 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 308.18 15.07 4.64 4.64 Total: -1.00 -26.93 308.18 -8.00 -34.94 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -7.20 Total: 0.96 kcal Atomic # 6 Polarization: -14.43 SS G_CDS: 0.27 Total: -14.17 kcal Atomic # 7 Polarization: -35.37 SS G_CDS: -0.31 Total: -35.68 kcal Atomic # 8 Polarization: -6.20 SS G_CDS: -0.38 Total: -6.58 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -26.93 -8.00 -34.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104351159.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.426 kcal (2) G-P(sol) polarization free energy of solvation -26.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds