Wall clock time and date at job start Sun Mar 29 2020 23:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.47036 * 2 1 4 4 H 1.09002 * 109.47012 * 53.16683 * 3 2 1 5 5 C 1.50703 * 109.47036 * 293.16828 * 3 2 1 6 6 H 1.08005 * 119.99692 * 275.24884 * 5 3 2 7 7 C 1.37872 * 120.00231 * 95.25021 * 5 3 2 8 8 N 1.31517 * 119.99861 * 5.40390 * 7 5 3 9 9 Si 1.86801 * 119.99983 * 185.40354 * 7 5 3 10 10 H 1.48494 * 109.47240 * 90.00245 * 9 7 5 11 11 H 1.48509 * 109.46989 * 210.00048 * 9 7 5 12 12 H 1.48497 * 109.47316 * 329.99998 * 9 7 5 13 13 N 1.46897 * 109.47358 * 173.16647 * 3 2 1 14 14 C 1.46903 * 110.99810 * 50.25075 * 13 3 2 15 15 C 1.46904 * 110.99751 * 286.30273 * 13 3 2 16 16 C 1.52995 * 109.47131 * 288.03123 * 15 13 3 17 17 C 1.53176 * 109.54613 * 294.82446 * 16 15 13 18 18 C 1.53090 * 109.16215 * 183.15020 * 17 16 15 19 19 O 1.42905 * 109.41465 * 57.61253 * 18 17 16 20 20 C 1.42904 * 114.09530 * 298.83757 * 19 18 17 21 21 C 1.53089 * 109.41380 * 61.15827 * 20 19 18 22 22 H 1.09001 * 109.46976 * 182.45318 * 1 2 3 23 23 H 1.08996 * 109.47170 * 302.45569 * 1 2 3 24 24 H 1.09002 * 109.46739 * 62.45939 * 1 2 3 25 25 H 1.08999 * 109.47447 * 239.99886 * 2 1 3 26 26 H 1.09000 * 109.46975 * 119.99445 * 2 1 3 27 27 H 0.96998 * 119.99551 * 179.97438 * 8 7 5 28 28 H 1.09001 * 109.46632 * 54.00001 * 14 13 3 29 29 H 1.08998 * 109.47501 * 294.00096 * 14 13 3 30 30 H 1.08999 * 109.47172 * 173.99342 * 14 13 3 31 31 H 1.09002 * 109.47376 * 48.04102 * 15 13 3 32 32 H 1.09004 * 109.46740 * 168.03426 * 15 13 3 33 33 H 1.09005 * 109.54007 * 55.09238 * 16 15 13 34 34 H 1.08991 * 109.52410 * 303.05786 * 17 16 15 35 35 H 1.08999 * 109.52265 * 63.24835 * 17 16 15 36 36 H 1.09002 * 109.48474 * 297.62748 * 18 17 16 37 37 H 1.09002 * 109.48030 * 177.59086 * 18 17 16 38 38 H 1.09005 * 109.48145 * 301.17792 * 20 19 18 39 39 H 1.09002 * 109.49040 * 181.14984 * 20 19 18 40 40 H 1.09001 * 109.52372 * 182.47977 * 21 20 19 41 41 H 1.09005 * 109.52411 * 62.30025 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5803 1.9904 0.8225 5 6 1.6804 2.1025 -1.3063 6 1 2.3215 1.9812 -2.1670 7 6 0.5332 2.8610 -1.4026 8 7 -0.1910 3.0970 -0.3304 9 14 0.0075 3.5537 -3.0559 10 1 -0.8771 2.5785 -3.7424 11 1 -0.7271 4.8275 -2.8479 12 1 1.2089 3.8059 -3.8915 13 7 3.4997 1.4459 0.1648 14 6 4.1392 0.5290 -0.7883 15 6 3.8743 1.1146 1.5461 16 6 3.5325 2.2906 2.4632 17 6 4.3983 3.4984 2.0921 18 6 4.1058 4.6441 3.0645 19 8 4.3571 4.2078 4.4019 20 6 3.5425 3.1108 4.8205 21 6 3.8123 1.9035 3.9186 22 1 -0.3633 -1.0267 0.0440 23 1 -0.3633 0.5515 0.8671 24 1 -0.3633 0.4752 -0.9112 25 1 1.8935 -0.5138 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 -0.9980 3.6310 -0.3982 28 1 3.8163 0.7738 -1.8003 29 1 3.8534 -0.4964 -0.5538 30 1 5.2223 0.6295 -0.7183 31 1 3.3254 0.2301 1.8693 32 1 4.9449 0.9155 1.5944 33 1 2.4790 2.5469 2.3501 34 1 5.4515 3.2254 2.1571 35 1 4.1653 3.8151 1.0755 36 1 3.0621 4.9437 2.9699 37 1 4.7502 5.4919 2.8316 38 1 2.4914 3.3904 4.7488 39 1 3.7807 2.8540 5.8527 40 1 3.1602 1.0795 4.2083 41 1 4.8537 1.5982 4.0206 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104351159.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:04 Heat of formation + Delta-G solvation = -76.245832 kcal Electronic energy + Delta-G solvation = -18881.084308 eV Core-core repulsion = 16180.671215 eV Total energy + Delta-G solvation = -2700.413093 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.46800 -38.90953 -35.54967 -34.16413 -32.70063 -31.91210 -28.88802 -28.33503 -25.95625 -24.62708 -24.25381 -23.10642 -21.20125 -20.23120 -18.34510 -17.08337 -16.91156 -16.62773 -16.11658 -15.90836 -15.57493 -15.29898 -15.04536 -14.58071 -14.20928 -14.05836 -13.50328 -13.27359 -12.91110 -12.84574 -12.74741 -12.66840 -12.44917 -12.19988 -12.17111 -12.11508 -11.84377 -11.70197 -11.32752 -11.17597 -10.99091 -10.81284 -10.42649 -10.36278 -8.67912 -8.03852 -6.08965 1.40880 1.43891 1.51679 2.46410 3.00786 3.17992 3.54194 3.85507 4.05729 4.08028 4.20331 4.38297 4.45454 4.47959 4.52727 4.61117 4.64117 4.74055 4.78507 4.79749 4.86860 4.88789 4.99242 5.01718 5.04348 5.12818 5.17759 5.25690 5.31744 5.43673 5.47537 5.57323 5.68635 5.75567 5.81581 6.25921 6.29706 6.71825 6.87262 7.03108 7.55519 9.03111 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.022727 B = 0.007747 C = 0.006980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.714096 B = 3613.567413 C = 4010.510603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.133 4.133 3 C 0.207 3.793 4 H 0.043 0.957 5 C -0.502 4.502 6 H 0.046 0.954 7 C 0.028 3.972 8 N -0.913 5.913 9 Si 0.938 3.062 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.274 1.274 13 N -0.546 5.546 14 C 0.037 3.963 15 C 0.064 3.936 16 C -0.082 4.082 17 C -0.127 4.127 18 C 0.062 3.938 19 O -0.398 6.398 20 C 0.059 3.941 21 C -0.142 4.142 22 H 0.043 0.957 23 H 0.032 0.968 24 H 0.038 0.962 25 H 0.043 0.957 26 H 0.035 0.965 27 H 0.258 0.742 28 H 0.051 0.949 29 H 0.019 0.981 30 H 0.066 0.934 31 H 0.023 0.977 32 H 0.074 0.926 33 H 0.043 0.957 34 H 0.070 0.930 35 H 0.062 0.938 36 H 0.035 0.965 37 H 0.106 0.894 38 H 0.041 0.959 39 H 0.116 0.884 40 H 0.077 0.923 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.257 -2.799 6.941 10.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.172 4.172 3 C 0.100 3.900 4 H 0.061 0.939 5 C -0.541 4.541 6 H 0.064 0.936 7 C -0.172 4.172 8 N -0.553 5.553 9 Si 0.765 3.235 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.198 1.198 13 N -0.269 5.269 14 C -0.111 4.111 15 C -0.064 4.064 16 C -0.101 4.101 17 C -0.165 4.165 18 C -0.015 4.015 19 O -0.317 6.317 20 C -0.017 4.017 21 C -0.180 4.180 22 H 0.062 0.938 23 H 0.051 0.949 24 H 0.057 0.943 25 H 0.062 0.938 26 H 0.053 0.947 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.037 0.963 30 H 0.085 0.915 31 H 0.041 0.959 32 H 0.093 0.907 33 H 0.061 0.939 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.054 0.946 37 H 0.124 0.876 38 H 0.059 0.941 39 H 0.134 0.866 40 H 0.095 0.905 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 7.418 -2.135 7.005 10.424 hybrid contribution -1.261 -0.467 -1.134 1.759 sum 6.157 -2.602 5.871 8.897 Atomic orbital electron populations 1.21301 0.96154 0.98276 1.01053 1.22102 0.96523 1.00435 0.98179 1.19381 0.82795 0.90937 0.96922 0.93948 1.21207 1.06303 1.30171 0.96441 0.93622 1.25442 0.97095 0.96038 0.98613 1.70034 1.16256 1.40173 1.28790 0.85867 0.78232 0.77762 0.81591 1.20406 1.21366 1.19847 1.62388 1.10917 1.50497 1.03082 1.22195 0.98477 0.93542 0.96896 1.22080 0.99724 0.95378 0.89229 1.21100 0.98884 0.95656 0.94417 1.21928 0.99761 0.95381 0.99436 1.22623 1.00248 0.96964 0.81638 1.87837 1.62807 1.50900 1.30182 1.22686 0.94103 0.85829 0.99117 1.22165 1.03018 0.98744 0.94042 0.93830 0.94884 0.94310 0.93849 0.94656 0.93322 0.92969 0.96301 0.91520 0.95922 0.90749 0.93878 0.91123 0.91910 0.94614 0.87639 0.94083 0.86629 0.90460 0.90222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.88 9.04 71.98 0.65 -4.23 16 2 C -0.13 -5.78 4.40 30.60 0.13 -5.65 16 3 C 0.21 9.89 1.81 44.17 0.08 9.97 16 4 H 0.04 2.32 5.35 -2.39 -0.01 2.31 16 5 C -0.50 -26.75 7.64 25.60 0.20 -26.55 16 6 H 0.05 2.47 6.55 -2.91 -0.02 2.45 16 7 C 0.03 1.48 4.34 84.65 0.37 1.85 16 8 N -0.91 -51.09 12.12 21.45 0.26 -50.83 16 9 Si 0.94 43.40 29.54 68.60 2.03 45.42 16 10 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 11 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 12 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 13 N -0.55 -22.57 4.16 -901.45 -3.75 -26.32 16 14 C 0.04 1.37 8.52 127.69 1.09 2.45 16 15 C 0.06 2.23 4.28 86.30 0.37 2.60 16 16 C -0.08 -2.78 2.29 -10.68 -0.02 -2.80 16 17 C -0.13 -4.19 5.27 30.68 0.16 -4.03 16 18 C 0.06 1.88 6.84 72.01 0.49 2.37 16 19 O -0.40 -11.89 10.77 -148.98 -1.60 -13.49 16 20 C 0.06 1.53 6.84 72.01 0.49 2.03 16 21 C -0.14 -3.78 5.42 30.68 0.17 -3.61 16 22 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 23 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 24 H 0.04 1.89 6.67 -2.39 -0.02 1.88 16 25 H 0.04 1.86 6.88 -2.39 -0.02 1.84 16 26 H 0.03 1.42 6.49 -2.39 -0.02 1.40 16 27 H 0.26 13.94 8.31 -92.71 -0.77 13.17 16 28 H 0.05 2.08 6.53 -2.39 -0.02 2.06 16 29 H 0.02 0.65 6.73 -2.39 -0.02 0.64 16 30 H 0.07 2.09 8.12 -2.39 -0.02 2.07 16 31 H 0.02 0.80 6.38 -2.39 -0.02 0.78 16 32 H 0.07 2.28 7.98 -2.38 -0.02 2.26 16 33 H 0.04 1.81 6.43 -2.38 -0.02 1.79 16 34 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.06 2.42 7.86 -2.39 -0.02 2.41 16 36 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.11 2.77 8.14 -2.39 -0.02 2.75 16 38 H 0.04 1.13 8.14 -2.38 -0.02 1.11 16 39 H 0.12 2.32 8.14 -2.39 -0.02 2.30 16 40 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 Total: -1.00 -57.68 308.18 2.08 -55.59 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: 0.98 Total: 15.23 kcal Atomic # 6 Polarization: -29.78 SS G_CDS: 4.18 Total: -25.61 kcal Atomic # 7 Polarization: -73.66 SS G_CDS: -3.49 Total: -77.15 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: -1.60 Total: -13.49 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.42 kcal Total: -57.68 2.08 -55.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104351159.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.652 kcal (2) G-P(sol) polarization free energy of solvation -57.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds