Wall clock time and date at job start Sun Mar 29 2020 22:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47812 * 2 1 4 4 H 1.09002 * 109.50561 * 55.07988 * 3 2 1 5 5 C 1.53094 * 109.51204 * 175.21813 * 3 2 1 6 6 N 1.47006 * 109.25983 * 176.77957 * 5 3 2 7 7 C 1.46901 * 111.00573 * 177.60708 * 6 5 3 8 8 C 1.52992 * 109.47859 * 189.68511 * 7 6 5 9 9 C 1.52997 * 109.47482 * 179.97438 * 8 7 6 10 10 C 1.50701 * 109.47212 * 179.97438 * 9 8 7 11 11 H 1.07998 * 120.00129 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99861 * 179.97438 * 10 9 8 13 13 N 1.31510 * 119.99913 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99734 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47094 * 90.00289 * 14 12 10 16 16 H 1.48505 * 109.47195 * 210.00171 * 14 12 10 17 17 H 1.48493 * 109.47449 * 330.00136 * 14 12 10 18 18 C 1.47017 * 110.75754 * 301.38662 * 6 5 3 19 19 C 1.53099 * 109.25650 * 58.61252 * 18 6 5 20 20 H 1.09001 * 109.50280 * 183.17695 * 19 18 6 21 21 C 1.52999 * 109.50530 * 63.08948 * 19 18 6 22 22 O 1.43016 * 109.26050 * 303.15357 * 19 18 6 23 23 H 1.08998 * 109.47376 * 180.02562 * 1 2 3 24 24 H 1.09008 * 109.46618 * 300.00385 * 1 2 3 25 25 H 1.08997 * 109.47165 * 59.99796 * 1 2 3 26 26 H 1.09007 * 109.47083 * 239.99865 * 2 1 3 27 27 H 1.09006 * 109.47231 * 120.00383 * 2 1 3 28 28 H 1.09003 * 109.50367 * 56.84798 * 5 3 2 29 29 H 1.09000 * 109.50667 * 296.71771 * 5 3 2 30 30 H 1.09002 * 109.46980 * 69.68170 * 7 6 5 31 31 H 1.09001 * 109.46628 * 309.68591 * 7 6 5 32 32 H 1.09002 * 109.47103 * 59.99734 * 8 7 6 33 33 H 1.08998 * 109.46862 * 300.00546 * 8 7 6 34 34 H 1.09002 * 109.47153 * 59.99783 * 9 8 7 35 35 H 1.09001 * 109.46832 * 299.99974 * 9 8 7 36 36 H 0.97002 * 119.99768 * 179.97438 * 13 12 10 37 37 H 1.08998 * 109.50671 * 178.54754 * 18 6 5 38 38 H 1.09001 * 109.50135 * 298.63886 * 18 6 5 39 39 H 1.08998 * 109.47315 * 60.00508 * 21 19 18 40 40 H 1.09000 * 109.46749 * 180.02562 * 21 19 18 41 41 H 1.09000 * 109.47483 * 299.99615 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6070 1.9817 0.8425 5 6 3.5663 1.4450 0.1203 6 7 4.0565 2.8287 0.0421 7 6 5.5149 2.8810 0.2105 8 6 5.9588 4.3369 0.3652 9 6 7.4776 4.3912 0.5412 10 6 7.9148 5.8254 0.6930 11 1 7.1825 6.6188 0.6670 12 6 9.2496 6.1246 0.8661 13 7 10.1412 5.1584 0.8983 14 14 9.7914 7.9023 1.0550 15 1 9.7773 8.2740 2.4926 16 1 11.1661 8.0607 0.5162 17 1 8.8615 8.7854 0.3062 18 6 3.6497 3.4549 -1.2243 19 6 2.1226 3.4322 -1.3311 20 1 1.8190 3.8443 -2.2934 21 6 1.5191 4.2709 -0.2027 22 8 1.6621 2.0826 -1.2218 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.9964 0.8600 -0.6927 29 1 3.8568 1.0094 1.0763 30 1 5.9975 2.4450 -0.6642 31 1 5.7983 2.3183 1.1000 32 1 5.4762 4.7729 1.2400 33 1 5.6753 4.8996 -0.5242 34 1 7.9605 3.9551 -0.3333 35 1 7.7606 3.8286 1.4309 36 1 11.0803 5.3689 1.0197 37 1 4.0010 4.4864 -1.2497 38 1 4.0818 2.9024 -2.0587 39 1 1.8733 5.2984 -0.2843 40 1 0.4319 4.2539 -0.2791 41 1 1.8218 3.8574 0.7593 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111276659.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:00 Heat of formation + Delta-G solvation = -67.900140 kcal Electronic energy + Delta-G solvation = -17952.032280 eV Core-core repulsion = 15251.981083 eV Total energy + Delta-G solvation = -2700.051197 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.96801 -36.25485 -34.37451 -33.52773 -31.46471 -31.02542 -28.43425 -26.81469 -25.22565 -23.50236 -22.57007 -21.31051 -19.88540 -19.40362 -16.60169 -16.49204 -15.99872 -15.23069 -14.83210 -14.56630 -14.37764 -13.99635 -13.73387 -13.69103 -13.28151 -12.39350 -12.26235 -12.13191 -11.88598 -11.67883 -11.65291 -11.39221 -11.17129 -11.12328 -10.97113 -10.80048 -10.55312 -10.44610 -10.20612 -9.61395 -9.56080 -9.28066 -9.01785 -8.33662 -8.10105 -5.98942 -4.01026 3.32700 3.38718 3.42236 3.72190 4.01924 4.47519 4.72361 4.85779 4.98556 5.06043 5.14733 5.24125 5.25024 5.36897 5.39824 5.46737 5.64226 5.66694 5.75368 5.79323 5.82037 5.89868 5.94790 5.98966 6.00340 6.14420 6.18382 6.30294 6.37377 6.68437 6.74970 7.09984 7.22282 7.31898 7.33754 7.69055 7.83871 8.01408 8.44673 9.06136 9.62926 11.12548 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.047511 B = 0.004227 C = 0.004006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.191638 B = 6623.236317 C = 6988.594149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.116 4.116 3 C 0.091 3.909 4 H 0.069 0.931 5 C 0.022 3.978 6 N -0.534 5.534 7 C 0.056 3.944 8 C -0.104 4.104 9 C 0.022 3.978 10 C -0.518 4.518 11 H 0.055 0.945 12 C 0.055 3.945 13 N -0.897 5.897 14 Si 0.892 3.108 15 H -0.280 1.280 16 H -0.287 1.287 17 H -0.274 1.274 18 C 0.021 3.979 19 C 0.090 3.910 20 H 0.101 0.899 21 C -0.174 4.174 22 O -0.379 6.379 23 H 0.051 0.949 24 H 0.052 0.948 25 H 0.061 0.939 26 H 0.068 0.932 27 H 0.075 0.925 28 H 0.038 0.962 29 H 0.082 0.918 30 H 0.029 0.971 31 H 0.070 0.930 32 H 0.055 0.945 33 H 0.046 0.954 34 H 0.013 0.987 35 H 0.015 0.985 36 H 0.260 0.740 37 H 0.092 0.908 38 H 0.038 0.962 39 H 0.065 0.935 40 H 0.053 0.947 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.762 -8.143 -2.605 19.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.154 4.154 3 C 0.033 3.967 4 H 0.086 0.914 5 C -0.106 4.106 6 N -0.258 5.258 7 C -0.071 4.071 8 C -0.142 4.142 9 C -0.016 4.016 10 C -0.557 4.557 11 H 0.073 0.927 12 C -0.145 4.145 13 N -0.536 5.536 14 Si 0.720 3.280 15 H -0.207 1.207 16 H -0.213 1.213 17 H -0.199 1.199 18 C -0.107 4.107 19 C 0.033 3.967 20 H 0.119 0.881 21 C -0.231 4.231 22 O -0.298 6.298 23 H 0.070 0.930 24 H 0.071 0.929 25 H 0.080 0.920 26 H 0.087 0.913 27 H 0.094 0.906 28 H 0.056 0.944 29 H 0.100 0.900 30 H 0.047 0.953 31 H 0.089 0.911 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.032 0.968 35 H 0.034 0.966 36 H 0.070 0.930 37 H 0.111 0.889 38 H 0.056 0.944 39 H 0.084 0.916 40 H 0.072 0.928 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -17.889 -8.002 -2.346 19.737 hybrid contribution 1.114 0.643 -0.357 1.335 sum -16.775 -7.359 -2.702 18.516 Atomic orbital electron populations 1.21689 0.95215 1.01268 1.02281 1.21526 0.96712 0.94528 1.02616 1.22192 0.92986 0.93545 0.87969 0.91362 1.22785 0.95658 0.90481 1.01692 1.62283 1.14143 1.15980 1.33437 1.22320 0.84486 1.00152 1.00140 1.21642 0.99558 0.92324 1.00637 1.19074 0.88560 0.96999 0.96963 1.21246 0.92364 0.92744 1.49296 0.92690 1.25031 0.96878 0.97173 0.95451 1.69967 1.01583 1.31597 1.50463 0.86594 0.77869 0.85242 0.78304 1.20655 1.21261 1.19882 1.22821 0.95584 1.01483 0.90829 1.22255 0.92567 0.82489 0.99420 0.88133 1.22263 1.00084 1.00521 1.00249 1.87983 1.76828 1.26088 1.38890 0.92952 0.92921 0.91995 0.91347 0.90634 0.94416 0.90007 0.95284 0.91136 0.92600 0.93512 0.96850 0.96619 0.93042 0.88948 0.94396 0.91591 0.92825 0.90941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.81 37.15 0.36 -0.93 16 2 C -0.12 -1.12 5.64 -26.73 -0.15 -1.27 16 3 C 0.09 1.08 2.40 -26.68 -0.06 1.02 16 4 H 0.07 0.82 6.49 -51.93 -0.34 0.49 16 5 C 0.02 0.30 4.93 -3.72 -0.02 0.28 16 6 N -0.53 -8.18 4.10 -234.32 -0.96 -9.14 16 7 C 0.06 0.99 4.96 -3.83 -0.02 0.97 16 8 C -0.10 -2.17 5.08 -26.74 -0.14 -2.31 16 9 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 10 C -0.52 -14.85 9.11 -34.44 -0.31 -15.17 16 11 H 0.05 1.53 7.74 -52.49 -0.41 1.13 16 12 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 13 N -0.90 -27.22 13.29 55.43 0.74 -26.49 16 14 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 15 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 16 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 17 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 18 C 0.02 0.30 4.85 -3.71 -0.02 0.29 16 19 C 0.09 1.13 3.92 -26.68 -0.10 1.02 16 20 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 21 C -0.17 -2.03 8.89 37.16 0.33 -1.70 16 22 O -0.38 -4.97 9.82 -35.23 -0.35 -5.32 16 23 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.05 0.44 8.14 -51.92 -0.42 0.02 16 25 H 0.06 0.60 7.82 -51.93 -0.41 0.20 16 26 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 27 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.08 1.01 8.09 -51.93 -0.42 0.59 16 30 H 0.03 0.53 8.12 -51.93 -0.42 0.11 16 31 H 0.07 1.24 8.04 -51.93 -0.42 0.82 16 32 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 33 H 0.05 0.96 6.51 -51.93 -0.34 0.62 16 34 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 37 H 0.09 1.37 6.37 -51.93 -0.33 1.04 16 38 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.07 0.94 6.12 -51.93 -0.32 0.62 16 LS Contribution 319.41 15.07 4.81 4.81 Total: -1.00 -30.24 319.41 -8.75 -38.98 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: -7.60 Total: -3.81 kcal Atomic # 6 Polarization: -15.50 SS G_CDS: -0.37 Total: -15.87 kcal Atomic # 7 Polarization: -35.40 SS G_CDS: -0.22 Total: -35.62 kcal Atomic # 8 Polarization: -4.97 SS G_CDS: -0.35 Total: -5.32 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.24 -8.75 -38.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111276659.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.918 kcal (2) G-P(sol) polarization free energy of solvation -30.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds