Wall clock time and date at job start Sun Mar 29 2020 22:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47812 * 2 1 4 4 H 1.09002 * 109.50561 * 55.07988 * 3 2 1 5 5 C 1.53094 * 109.51204 * 175.21813 * 3 2 1 6 6 N 1.47006 * 109.25983 * 176.77957 * 5 3 2 7 7 C 1.46901 * 111.00573 * 177.60708 * 6 5 3 8 8 C 1.52992 * 109.47859 * 189.68511 * 7 6 5 9 9 C 1.52997 * 109.47482 * 179.97438 * 8 7 6 10 10 C 1.50701 * 109.47212 * 179.97438 * 9 8 7 11 11 H 1.07998 * 120.00129 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99861 * 179.97438 * 10 9 8 13 13 N 1.31510 * 119.99913 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99734 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47094 * 90.00289 * 14 12 10 16 16 H 1.48505 * 109.47195 * 210.00171 * 14 12 10 17 17 H 1.48493 * 109.47449 * 330.00136 * 14 12 10 18 18 C 1.47017 * 110.75754 * 301.38662 * 6 5 3 19 19 C 1.53099 * 109.25650 * 58.61252 * 18 6 5 20 20 H 1.09001 * 109.50280 * 183.17695 * 19 18 6 21 21 C 1.52999 * 109.50530 * 63.08948 * 19 18 6 22 22 O 1.43016 * 109.26050 * 303.15357 * 19 18 6 23 23 H 1.08998 * 109.47376 * 180.02562 * 1 2 3 24 24 H 1.09008 * 109.46618 * 300.00385 * 1 2 3 25 25 H 1.08997 * 109.47165 * 59.99796 * 1 2 3 26 26 H 1.09007 * 109.47083 * 239.99865 * 2 1 3 27 27 H 1.09006 * 109.47231 * 120.00383 * 2 1 3 28 28 H 1.09003 * 109.50367 * 56.84798 * 5 3 2 29 29 H 1.09000 * 109.50667 * 296.71771 * 5 3 2 30 30 H 1.09002 * 109.46980 * 69.68170 * 7 6 5 31 31 H 1.09001 * 109.46628 * 309.68591 * 7 6 5 32 32 H 1.09002 * 109.47103 * 59.99734 * 8 7 6 33 33 H 1.08998 * 109.46862 * 300.00546 * 8 7 6 34 34 H 1.09002 * 109.47153 * 59.99783 * 9 8 7 35 35 H 1.09001 * 109.46832 * 299.99974 * 9 8 7 36 36 H 0.97002 * 119.99768 * 179.97438 * 13 12 10 37 37 H 1.08998 * 109.50671 * 178.54754 * 18 6 5 38 38 H 1.09001 * 109.50135 * 298.63886 * 18 6 5 39 39 H 1.08998 * 109.47315 * 60.00508 * 21 19 18 40 40 H 1.09000 * 109.46749 * 180.02562 * 21 19 18 41 41 H 1.09000 * 109.47483 * 299.99615 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6070 1.9817 0.8425 5 6 3.5663 1.4450 0.1203 6 7 4.0565 2.8287 0.0421 7 6 5.5149 2.8810 0.2105 8 6 5.9588 4.3369 0.3652 9 6 7.4776 4.3912 0.5412 10 6 7.9148 5.8254 0.6930 11 1 7.1825 6.6188 0.6670 12 6 9.2496 6.1246 0.8661 13 7 10.1412 5.1584 0.8983 14 14 9.7914 7.9023 1.0550 15 1 9.7773 8.2740 2.4926 16 1 11.1661 8.0607 0.5162 17 1 8.8615 8.7854 0.3062 18 6 3.6497 3.4549 -1.2243 19 6 2.1226 3.4322 -1.3311 20 1 1.8190 3.8443 -2.2934 21 6 1.5191 4.2709 -0.2027 22 8 1.6621 2.0826 -1.2218 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.9964 0.8600 -0.6927 29 1 3.8568 1.0094 1.0763 30 1 5.9975 2.4450 -0.6642 31 1 5.7983 2.3183 1.1000 32 1 5.4762 4.7729 1.2400 33 1 5.6753 4.8996 -0.5242 34 1 7.9605 3.9551 -0.3333 35 1 7.7606 3.8286 1.4309 36 1 11.0803 5.3689 1.0197 37 1 4.0010 4.4864 -1.2497 38 1 4.0818 2.9024 -2.0587 39 1 1.8733 5.2984 -0.2843 40 1 0.4319 4.2539 -0.2791 41 1 1.8218 3.8574 0.7593 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111276659.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:00 Heat of formation + Delta-G solvation = -86.149476 kcal Electronic energy + Delta-G solvation = -17952.823631 eV Core-core repulsion = 15251.981083 eV Total energy + Delta-G solvation = -2700.842547 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.03250 -37.58788 -35.49899 -35.23749 -33.27018 -32.03301 -29.69240 -28.29682 -26.62182 -24.81437 -23.86445 -22.55597 -21.48893 -20.44581 -18.51654 -17.54059 -17.35418 -16.54283 -16.44985 -15.89423 -15.62180 -15.26984 -14.94671 -14.65175 -14.39332 -14.18865 -13.70889 -13.39527 -13.06469 -12.92183 -12.85459 -12.72222 -12.63815 -12.45324 -12.36756 -12.05771 -11.89313 -11.80861 -11.45840 -11.40174 -11.25858 -11.03076 -10.56460 -10.46049 -9.35273 -8.20960 -6.32086 1.39747 1.41251 1.52390 2.40231 2.73031 2.87150 3.12256 3.75984 3.86850 3.97012 4.08650 4.16173 4.23068 4.29515 4.39206 4.46520 4.46909 4.54815 4.67754 4.71676 4.75756 4.85756 4.93182 4.95571 5.00984 5.02438 5.12515 5.13426 5.21475 5.30300 5.40493 5.48519 5.50501 5.71646 5.84308 5.97224 6.03821 6.25498 6.28729 6.84632 7.37238 8.91062 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.047511 B = 0.004227 C = 0.004006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.191638 B = 6623.236317 C = 6988.594149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.113 4.113 3 C 0.093 3.907 4 H 0.069 0.931 5 C 0.021 3.979 6 N -0.536 5.536 7 C 0.067 3.933 8 C -0.087 4.087 9 C 0.026 3.974 10 C -0.542 4.542 11 H 0.060 0.940 12 C -0.002 4.002 13 N -0.934 5.934 14 Si 0.966 3.034 15 H -0.272 1.272 16 H -0.282 1.282 17 H -0.263 1.263 18 C 0.019 3.981 19 C 0.092 3.908 20 H 0.119 0.881 21 C -0.168 4.168 22 O -0.387 6.387 23 H 0.066 0.934 24 H 0.056 0.944 25 H 0.050 0.950 26 H 0.064 0.936 27 H 0.091 0.909 28 H 0.032 0.968 29 H 0.091 0.909 30 H 0.021 0.979 31 H 0.071 0.929 32 H 0.054 0.946 33 H 0.049 0.951 34 H -0.012 1.012 35 H -0.008 1.008 36 H 0.264 0.736 37 H 0.085 0.915 38 H 0.030 0.970 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.164 -7.622 -2.479 20.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.151 4.151 3 C 0.035 3.965 4 H 0.087 0.913 5 C -0.107 4.107 6 N -0.260 5.260 7 C -0.060 4.060 8 C -0.125 4.125 9 C -0.012 4.012 10 C -0.580 4.580 11 H 0.078 0.922 12 C -0.199 4.199 13 N -0.574 5.574 14 Si 0.790 3.210 15 H -0.197 1.197 16 H -0.207 1.207 17 H -0.187 1.187 18 C -0.109 4.109 19 C 0.034 3.966 20 H 0.136 0.864 21 C -0.225 4.225 22 O -0.306 6.306 23 H 0.085 0.915 24 H 0.075 0.925 25 H 0.069 0.931 26 H 0.083 0.917 27 H 0.109 0.891 28 H 0.051 0.949 29 H 0.110 0.890 30 H 0.039 0.961 31 H 0.089 0.911 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.007 0.993 35 H 0.011 0.989 36 H 0.072 0.928 37 H 0.103 0.897 38 H 0.048 0.952 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -19.315 -7.488 -2.222 20.834 hybrid contribution 1.551 0.435 -0.402 1.660 sum -17.764 -7.053 -2.624 19.292 Atomic orbital electron populations 1.21659 0.94405 1.02141 1.01915 1.21552 0.97367 0.92976 1.03234 1.22281 0.91733 0.94874 0.87609 0.91297 1.22894 0.96778 0.89004 1.02027 1.62235 1.12066 1.17586 1.34131 1.22049 0.86379 0.97712 0.99886 1.21368 0.95815 0.94697 1.00591 1.18971 0.91950 0.95618 0.94656 1.21680 0.92987 0.93900 1.49455 0.92216 1.25999 0.96949 1.02135 0.94833 1.70099 1.02046 1.34129 1.51174 0.85432 0.77541 0.79303 0.78692 1.19695 1.20726 1.18699 1.22875 0.97240 1.00742 0.90024 1.22330 0.90920 0.82623 1.00696 0.86379 1.22202 1.00885 1.00280 0.99139 1.87987 1.76753 1.26361 1.39524 0.91504 0.92505 0.93109 0.91702 0.89062 0.94934 0.89045 0.96057 0.91067 0.92769 0.93195 0.99322 0.98937 0.92760 0.89688 0.95169 0.91401 0.91450 0.92217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 9.81 71.98 0.71 -1.52 16 2 C -0.11 -1.97 5.64 30.59 0.17 -1.79 16 3 C 0.09 2.05 2.40 30.63 0.07 2.12 16 4 H 0.07 1.54 6.49 -2.39 -0.02 1.52 16 5 C 0.02 0.54 4.93 86.31 0.43 0.96 16 6 N -0.54 -16.06 4.10 -895.24 -3.67 -19.73 16 7 C 0.07 2.40 4.96 86.30 0.43 2.83 16 8 C -0.09 -3.67 5.08 30.59 0.16 -3.51 16 9 C 0.03 1.38 4.97 29.85 0.15 1.53 16 10 C -0.54 -31.39 9.11 25.60 0.23 -31.16 16 11 H 0.06 3.32 7.74 -2.91 -0.02 3.29 16 12 C 0.00 -0.09 5.46 84.66 0.46 0.37 16 13 N -0.93 -57.54 13.29 21.45 0.28 -57.25 16 14 Si 0.97 44.65 29.54 68.60 2.03 46.68 16 15 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 16 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 17 H -0.26 -11.58 7.11 99.48 0.71 -10.88 16 18 C 0.02 0.54 4.85 86.31 0.42 0.96 16 19 C 0.09 2.14 3.92 30.63 0.12 2.26 16 20 H 0.12 2.34 8.14 -2.39 -0.02 2.32 16 21 C -0.17 -3.63 8.89 71.98 0.64 -2.99 16 22 O -0.39 -9.53 9.82 -148.98 -1.46 -10.99 16 23 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 24 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 25 H 0.05 0.90 7.82 -2.39 -0.02 0.88 16 26 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 27 H 0.09 1.30 8.14 -2.38 -0.02 1.28 16 28 H 0.03 0.86 8.14 -2.39 -0.02 0.85 16 29 H 0.09 2.13 8.09 -2.39 -0.02 2.11 16 30 H 0.02 0.79 8.12 -2.39 -0.02 0.77 16 31 H 0.07 2.51 8.04 -2.39 -0.02 2.49 16 32 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 33 H 0.05 2.06 6.51 -2.39 -0.02 2.05 16 34 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 35 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 36 H 0.26 15.21 8.31 -92.71 -0.77 14.43 16 37 H 0.08 2.49 6.37 -2.39 -0.02 2.47 16 38 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.06 1.45 6.12 -2.39 -0.01 1.44 16 Total: -1.00 -64.30 319.41 2.12 -62.18 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: 0.96 Total: 9.05 kcal Atomic # 6 Polarization: -33.92 SS G_CDS: 3.98 Total: -29.93 kcal Atomic # 7 Polarization: -73.60 SS G_CDS: -3.38 Total: -76.99 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: -1.46 Total: -10.99 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -64.30 2.12 -62.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111276659.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.966 kcal (2) G-P(sol) polarization free energy of solvation -64.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds