Wall clock time and date at job start Sun Mar 29 2020 22:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47358 * 2 1 4 4 C 1.52998 * 109.46875 * 120.00004 * 2 1 3 5 5 C 1.53003 * 109.46923 * 173.91683 * 4 2 1 6 6 H 1.09005 * 109.54383 * 186.05286 * 5 4 2 7 7 C 1.53102 * 109.50536 * 306.15973 * 5 4 2 8 8 O 1.43017 * 109.25767 * 176.78745 * 7 5 4 9 9 C 1.43018 * 113.73603 * 301.32792 * 8 7 5 10 10 C 1.53098 * 109.25825 * 58.67242 * 9 8 7 11 11 N 1.47011 * 109.26195 * 303.15233 * 10 9 8 12 12 C 1.46892 * 111.00610 * 182.39247 * 11 10 9 13 13 C 1.53005 * 109.47116 * 64.88560 * 12 11 10 14 14 C 1.50700 * 109.46844 * 180.02562 * 13 12 11 15 15 H 1.07997 * 120.00672 * 359.97438 * 14 13 12 16 16 C 1.37876 * 119.99716 * 180.02562 * 14 13 12 17 17 N 1.31521 * 120.00187 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 120.00182 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.47267 * 270.00485 * 18 16 14 20 20 H 1.48509 * 109.46881 * 30.00240 * 18 16 14 21 21 H 1.48498 * 109.47229 * 150.00155 * 18 16 14 22 22 H 1.08999 * 109.46683 * 299.99997 * 1 2 3 23 23 H 1.08998 * 109.46584 * 59.99989 * 1 2 3 24 24 H 1.08996 * 109.47238 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47146 * 239.99780 * 2 1 3 26 26 H 1.09000 * 109.47188 * 307.99367 * 3 2 1 27 27 H 1.09005 * 109.47293 * 67.99077 * 3 2 1 28 28 H 1.08998 * 109.47309 * 187.99884 * 3 2 1 29 29 H 1.09001 * 109.47370 * 53.91749 * 4 2 1 30 30 H 1.08996 * 109.47591 * 293.91360 * 4 2 1 31 31 H 1.08994 * 109.50555 * 56.84900 * 7 5 4 32 32 H 1.09003 * 109.54038 * 296.73575 * 7 5 4 33 33 H 1.08994 * 109.50915 * 298.73673 * 9 8 7 34 34 H 1.09004 * 109.50911 * 178.60327 * 9 8 7 35 35 H 1.09002 * 109.50931 * 183.21625 * 10 9 8 36 36 H 1.09005 * 109.54721 * 63.10644 * 10 9 8 37 37 H 1.09004 * 109.47225 * 304.88616 * 12 11 10 38 38 H 1.08999 * 109.47519 * 184.88459 * 12 11 10 39 39 H 1.08990 * 109.47085 * 59.99963 * 13 12 11 40 40 H 1.09004 * 109.46550 * 299.99639 * 13 12 11 41 41 H 0.96997 * 120.00147 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5623 -0.8550 1.1752 6 1 3.9161 -1.4613 2.0091 7 6 3.9531 -1.5242 -0.1453 8 8 5.3789 -1.5788 -0.2426 9 6 6.0096 -0.2967 -0.1808 10 6 5.6397 0.3849 1.1392 11 7 4.1763 0.4791 1.2430 12 6 3.7795 1.1793 2.4718 13 6 4.2590 2.6309 2.4091 14 6 3.8525 3.3491 3.6701 15 1 3.3064 2.8230 4.4391 16 6 4.1768 4.6781 3.8415 17 7 3.8216 5.3051 4.9418 18 14 5.1207 5.5884 2.5112 19 1 6.5787 5.4571 2.7607 20 1 4.7912 5.0073 1.1848 21 1 4.7425 7.0243 2.5302 22 1 -0.3633 0.5138 0.8900 23 1 -0.3632 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8934 -0.5139 -0.8900 26 1 1.5648 1.9959 -0.8099 27 1 1.7981 1.9134 0.9528 28 1 3.1206 1.4458 -0.1430 29 1 1.5905 -1.7127 1.3054 30 1 1.7684 -0.1484 2.1359 31 1 3.5532 -0.9464 -0.9784 32 1 3.5473 -2.5354 -0.1756 33 1 5.6696 0.3169 -1.0150 34 1 7.0912 -0.4201 -0.2361 35 1 6.0716 1.3854 1.1658 36 1 6.0267 -0.2008 1.9731 37 1 4.2292 0.6850 3.3330 38 1 2.6939 1.1591 2.5672 39 1 3.8094 3.1251 1.5480 40 1 5.3447 2.6511 2.3138 41 1 4.0501 6.2400 5.0625 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113941131.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:39 Heat of formation + Delta-G solvation = -48.757263 kcal Electronic energy + Delta-G solvation = -18948.895746 eV Core-core repulsion = 16249.674647 eV Total energy + Delta-G solvation = -2699.221099 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.94852 -36.69918 -35.14674 -32.90568 -31.36410 -30.36798 -27.41328 -26.67358 -26.26245 -23.75188 -22.64966 -20.80495 -20.19716 -18.87316 -16.97981 -16.20223 -15.84495 -15.36357 -14.95836 -14.70002 -14.25125 -13.85774 -13.49429 -13.31693 -13.12378 -12.60940 -12.41494 -12.13767 -11.86431 -11.71656 -11.50477 -11.24467 -11.19858 -10.91513 -10.54469 -10.40591 -10.37068 -10.18592 -9.99786 -9.84954 -9.62448 -9.23970 -9.16279 -8.53950 -7.73836 -6.05685 -4.03781 3.29863 3.37963 3.42672 3.94768 4.19202 4.44473 4.82840 5.02939 5.16493 5.19904 5.25201 5.28624 5.33415 5.44760 5.51709 5.65533 5.73300 5.82306 5.85288 5.93793 6.00551 6.06924 6.12245 6.20412 6.22959 6.32315 6.33853 6.36817 6.53954 6.72027 6.83501 7.09240 7.19808 7.22308 7.27047 7.54888 7.58544 7.82522 8.51634 8.98561 9.56795 11.07726 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.022603 B = 0.007775 C = 0.006573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.487673 B = 3600.354923 C = 4258.780359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.089 4.089 3 C -0.157 4.157 4 C -0.111 4.111 5 C 0.048 3.952 6 H 0.043 0.957 7 C 0.067 3.933 8 O -0.391 6.391 9 C 0.064 3.936 10 C 0.013 3.987 11 N -0.524 5.524 12 C 0.065 3.935 13 C -0.006 4.006 14 C -0.520 4.520 15 H 0.070 0.930 16 C 0.068 3.932 17 N -0.904 5.904 18 Si 0.878 3.122 19 H -0.279 1.279 20 H -0.262 1.262 21 H -0.288 1.288 22 H 0.054 0.946 23 H 0.050 0.950 24 H 0.046 0.954 25 H 0.063 0.937 26 H 0.030 0.970 27 H 0.058 0.942 28 H 0.096 0.904 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.064 0.936 32 H 0.089 0.911 33 H 0.057 0.943 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.038 0.962 37 H 0.024 0.976 38 H 0.078 0.922 39 H 0.027 0.973 40 H 0.009 0.991 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.049 -12.240 -11.439 16.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.107 4.107 3 C -0.215 4.215 4 C -0.149 4.149 5 C -0.061 4.061 6 H 0.061 0.939 7 C -0.010 4.010 8 O -0.310 6.310 9 C -0.013 4.013 10 C -0.116 4.116 11 N -0.249 5.249 12 C -0.062 4.062 13 C -0.044 4.044 14 C -0.559 4.559 15 H 0.088 0.912 16 C -0.133 4.133 17 N -0.543 5.543 18 Si 0.706 3.294 19 H -0.204 1.204 20 H -0.187 1.187 21 H -0.214 1.214 22 H 0.073 0.927 23 H 0.069 0.931 24 H 0.065 0.935 25 H 0.082 0.918 26 H 0.049 0.951 27 H 0.077 0.923 28 H 0.115 0.885 29 H 0.079 0.921 30 H 0.094 0.906 31 H 0.082 0.918 32 H 0.107 0.893 33 H 0.075 0.925 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.056 0.944 37 H 0.042 0.958 38 H 0.096 0.904 39 H 0.045 0.955 40 H 0.027 0.973 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.114 -11.971 -11.762 16.819 hybrid contribution 0.600 0.430 0.332 0.810 sum -0.513 -11.541 -11.429 16.251 Atomic orbital electron populations 1.21883 0.96219 1.00757 1.01684 1.21079 0.94470 0.97957 0.97214 1.22259 1.04410 0.93747 1.01043 1.21743 0.93277 1.00253 0.99625 1.22250 0.95521 0.90816 0.97514 0.93864 1.22815 0.81035 1.00513 0.96661 1.87925 1.19609 1.29185 1.94283 1.22679 0.97366 0.84339 0.96870 1.22833 0.89843 1.01802 0.97083 1.62595 1.06788 1.15950 1.39599 1.22287 1.00726 0.95912 0.87237 1.19586 0.95697 0.91174 0.97940 1.21069 1.36686 0.95638 1.02496 0.91219 1.24990 0.95491 0.97473 0.95358 1.69915 1.47176 1.11015 1.26160 0.86792 0.80356 0.78952 0.83323 1.20445 1.18686 1.21448 0.92700 0.93105 0.93498 0.91826 0.95066 0.92302 0.88530 0.92084 0.90606 0.91811 0.89271 0.92497 0.88987 0.88972 0.94396 0.95789 0.90430 0.95493 0.97290 0.92746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.19 37.16 0.34 -1.37 16 2 C -0.09 -1.13 2.59 -90.62 -0.23 -1.37 16 3 C -0.16 -2.42 7.69 37.15 0.29 -2.13 16 4 C -0.11 -1.45 4.48 -26.73 -0.12 -1.57 16 5 C 0.05 0.68 2.27 -67.60 -0.15 0.52 16 6 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 7 C 0.07 0.85 5.88 37.21 0.22 1.07 16 8 O -0.39 -5.61 10.83 -35.23 -0.38 -5.99 16 9 C 0.06 0.86 7.01 37.21 0.26 1.12 16 10 C 0.01 0.20 5.42 -3.71 -0.02 0.18 16 11 N -0.52 -8.54 1.56 -226.33 -0.35 -8.89 16 12 C 0.06 1.26 3.65 -3.83 -0.01 1.25 16 13 C -0.01 -0.15 3.94 -27.88 -0.11 -0.26 16 14 C -0.52 -14.63 9.66 -34.44 -0.33 -14.97 16 15 H 0.07 2.11 7.99 -52.49 -0.42 1.69 16 16 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 17 N -0.90 -27.80 13.96 55.43 0.77 -27.02 16 18 Si 0.88 21.64 27.47 -169.99 -4.67 16.97 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.26 -6.21 6.54 56.52 0.37 -5.84 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.06 0.76 5.91 -51.93 -0.31 0.45 16 26 H 0.03 0.45 8.13 -51.93 -0.42 0.03 16 27 H 0.06 1.03 6.62 -51.93 -0.34 0.69 16 28 H 0.10 1.60 5.72 -51.93 -0.30 1.30 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.08 1.11 5.86 -51.93 -0.30 0.81 16 31 H 0.06 0.80 6.02 -51.93 -0.31 0.49 16 32 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.09 1.50 6.33 -51.93 -0.33 1.18 16 36 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.02 0.49 8.13 -51.93 -0.42 0.07 16 38 H 0.08 1.52 4.52 -51.93 -0.23 1.29 16 39 H 0.03 0.64 7.16 -51.93 -0.37 0.27 16 40 H 0.01 0.21 5.90 -51.93 -0.31 -0.10 16 41 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 301.70 15.07 4.55 4.55 Total: -1.00 -29.81 301.70 -7.10 -36.91 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -7.04 Total: -0.88 kcal Atomic # 6 Polarization: -15.68 SS G_CDS: 0.02 Total: -15.66 kcal Atomic # 7 Polarization: -36.33 SS G_CDS: 0.42 Total: -35.91 kcal Atomic # 8 Polarization: -5.61 SS G_CDS: -0.38 Total: -5.99 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.67 Total: 16.97 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -29.81 -7.10 -36.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113941131.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.843 kcal (2) G-P(sol) polarization free energy of solvation -29.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds